141 research outputs found
Remote sensing of the Martian surface
Researchers investigated the physical properties of the Martian surface as inferred from a combination of orbiting and earth-based remote sensing observations and in-situ observations. This approach provides the most detailed and self-consistent view of the global and regional nature of the surface. Results focus on the areas of modeling the diurnal variation of the surface temperature of Mars, incorporating the effects of atmospheric radiation, with implications for the interpretation of surface thermal inertia; modeling the thermal emission from particulate surfaces, with application to observations of the surfaces of the Earth, Moon, and Mars; modeling the reflectance spectrum of Mars in an effort to understand the role of particle size in the difference between the bright and dark regions; and determining the slope properties of different terrestrial surfaces and comparing them with planetary slopes derived from radar observations
Selection for Replicases in Protocells
PMCID: PMC3649988This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Kinetics of H2–O2–H2O redox equilibria and formation of metastable H2O2 under low temperature hydrothermal conditions
Author Posting. © The Author(s), 2010. This is the author's version of the work. It is posted here by permission of Elsevier B.V. for personal use, not for redistribution. The definitive version was published in Geochimica et Cosmochimica Acta 75 (2011): 1594-1607, doi:10.1016/j.gca.2010.12.020.Hydrothermal experiments were conducted to evaluate the kinetics of H2(aq)
oxidation in the homogeneous H2-O2-H2O system at conditions reflecting
subsurface/near-seafloor hydrothermal environments (55-250 oC and 242-497 bar). The
kinetics of the water-forming reaction that controls the fundamental equilibrium between
dissolved H2(aq) and O2(aq), are expected to impose significant constraints on the redox
gradients that develop when mixing occurs between oxygenated seawater and high-
temperature anoxic vent fluid at near-seafloor conditions. Experimental data indicate that,
indeed, the kinetics of H2(aq)-O2(aq) equilibrium become slower with decreasing
temperature, allowing excess H2(aq) to remain in solution. Sluggish reaction rates of H2(aq)
oxidation suggest that active microbial populations in near-seafloor and subsurface
environments could potentially utilize both H2(aq) and O2(aq), even at temperatures lower
than 40 oC due to H2(aq) persistence in the seawater/vent fluid mixtures. For these H2-O2
disequilibrium conditions, redox gradients along the seawater/hydrothermal fluid mixing
interface are not sharp and microbially-mediated H2(aq) oxidation coupled with a lack of
other electron acceptors (e.g. nitrate) could provide an important energy source available
at low-temperature diffuse flow vent sites.
More importantly, when H2(aq)-O2(aq) disequilibrium conditions apply, formation
of metastable hydrogen peroxide is observed. The yield of H2O2(aq) synthesis appears to
be enhanced under conditions of elevated H2(aq)/O2(aq) molar ratios that correspond to
abundant H2(aq) concentrations. Formation of metastable H2O2 is expected to affect the
distribution of dissolved organic carbon (DOC) owing to the existence of an additional
strong oxidizing agent. Oxidation of magnetite and/or Fe++ by hydrogen peroxide could
also induce formation of metastable hydroxyl radicals (•OH) through Fenton-type
reactions, further broadening the implications of hydrogen peroxide in hydrothermal environments.This research was conducted with partial support from the NSF
OCE-0752221 and the Geophysical Laboratory Postdoctoral Fellowship. We would also
like to acknowledge contributions by the W.M. Keck Foundation and Shell towards
supporting the hydrothermal lab at the Geophysical Lab. SMS acknowledges support
from NSF OCE-0452333 and the Alfried-Krupp Wissenschaftskolleg Greifswald
(Germany), while WES acknowledges support from NSF grants OCE-0549457 and OCE-
0813861
Coupled Growth and Division of Model Protocell Membranes
The generation of synthetic forms of cellular life requires solutions to the problem of how biological processes such as cyclic growth and division could emerge from purely physical and chemical systems. Small unilamellar fatty acid vesicles grow when fed with fatty acid micelles and can be forced to divide by extrusion, but this artificial division process results in significant loss of protocell contents during each division cycle. Here we describe a simple and efficient pathway for model protocell membrane growth and division. The growth of large multilamellar fatty acid vesicles fed with fatty acid micelles, in a solution where solute permeation across the membranes is slow, results in the transformation of initially spherical vesicles into long thread-like vesicles, a process driven by the transient imbalance between surface area and volume growth. Modest shear forces are then sufficient to cause the thread-like vesicles to divide into multiple daughter vesicles without loss of internal contents. In an environment of gentle shear, protocell growth and division are thus coupled processes. We show that model protocells can proceed through multiple cycles of reproduction. Encapsulated RNA molecules, representing a primitive genome, are distributed to the daughter vesicles. Our observations bring us closer to the laboratory synthesis of a complete protocell consisting of a self-replicating genome and a self-replicating membrane compartment. In addition, the robustness and simplicity of this pathway suggests that similar processes might have occurred under the prebiotic conditions of the early Earth.Exobiology Program (U.S.) (Grant EXB02- 0031-0018)United States. National Aeronautics and Space Administration (Exobiology Program) (Grant EXB02-0031-0018)Howard Hughes Medical Institute (Investigator
Calculation of the relative metastabilities of proteins using the CHNOSZ software package
<p>Abstract</p> <p>Background</p> <p>Proteins of various compositions are required by organisms inhabiting different environments. The energetic demands for protein formation are a function of the compositions of proteins as well as geochemical variables including temperature, pressure, oxygen fugacity and pH. The purpose of this study was to explore the dependence of metastable equilibrium states of protein systems on changes in the geochemical variables.</p> <p>Results</p> <p>A software package called CHNOSZ implementing the revised Helgeson-Kirkham-Flowers (HKF) equations of state and group additivity for ionized unfolded aqueous proteins was developed. The program can be used to calculate standard molal Gibbs energies and other thermodynamic properties of reactions and to make chemical speciation and predominance diagrams that represent the metastable equilibrium distributions of proteins. The approach takes account of the chemical affinities of reactions in open systems characterized by the chemical potentials of basis species. The thermodynamic database included with the package permits application of the software to mineral and other inorganic systems as well as systems of proteins or other biomolecules.</p> <p>Conclusion</p> <p>Metastable equilibrium activity diagrams were generated for model cell-surface proteins from archaea and bacteria adapted to growth in environments that differ in temperature and chemical conditions. The predicted metastable equilibrium distributions of the proteins can be compared with the optimal growth temperatures of the organisms and with geochemical variables. The results suggest that a thermodynamic assessment of protein metastability may be useful for integrating bio- and geochemical observations.</p
A metastable equilibrium model for the relative abundances of microbial phyla in a hot spring
Many studies link the compositions of microbial communities to their environments, but the energetics of organism-specific biomass synthesis as a function of geochemical variables has rarely been assessed. We describe a thermodynamic model that integrates geochemical and metagenomic data for biofilms sampled at five sites along a thermal and chemical gradient in the outflow channel of the hot spring known as ‘‘Bison Pool’’ in Yellowstone National Park. The relative abundances of major phyla in individual communities sampled along the outflow channel are modeled by computing metastable equilibrium among model proteins with amino acid compositions derived from metagenomic sequences. Geochemical conditions are represented by temperature and activities of basis species, including pH and oxidation-reduction potential quantified as the activity of dissolved hydrogen. By adjusting the activity of hydrogen, the model can be tuned to closely approximate the relative abundances of the phyla observed in the community profiles generated from BLAST assignments. The findings reveal an inverse relationship between the energy demand to form the proteins at equal thermodynamic activities and the abundance of phyla in the community.Although the metabolisms used by many members of these communities are driven by chemical disequilibria, the results support the possibility that higher-level patterns of chemotrophic microbial ecosystems are shaped by metastable equilibrium states that depend on both the composition of biomass and the environmental conditions
Supervolcanoes Within an Ancient Volcanic Province in Arabia Terra, Mars
Several irregularly shaped craters located within Arabia Terra, Mars represent a new type of highland volcanic construct and together constitute a previously unrecognized martian igneous province. Similar to terrestrial supervolcanoes, these low-relief paterae display a range of geomorphic features related to structural collapse, effusive volcanism, and explosive eruptions. Extruded lavas contributed to the formation of enigmatic highland ridged plains in Arabia Terra. Outgassed sulfur and erupted fine-grained pyroclastics from these calderas likely fed the formation of altered, layered sedimentary rocks and fretted terrain found throughout the equatorial region. Discovery of a new type of volcanic construct in the Arabia volcanic province fundamentally changes the picture of ancient volcanism and climate evolution on Mars. Other eroded topographic basins in the ancient Martian highlands that have been dismissed as degraded impact craters should be reconsidered as possible volcanic constructs formed in an early phase of widespread, disseminated magmatism on Mars
Methane Clumped Isotopes: Progress and Potential for a New Isotopic Tracer
The isotopic composition of methane is of longstanding geochemical interest, with important implications for understanding petroleum systems, atmospheric greenhouse gas concentrations, the global carbon cycle, and life in extreme environments. Recent analytical developments focusing on multiply substituted isotopologues (‘clumped isotopes’) are opening a valuable new window into methane geochemistry. When methane forms in internal isotopic equilibrium, clumped isotopes can provide a direct record of formation temperature, making this property particularly valuable for identifying different methane origins. However, it has also become clear that in certain settings methane clumped isotope measurements record kinetic rather than equilibrium isotope effects. Here we present a substantially expanded dataset of methane clumped isotope analyses, and provide a synthesis of the current interpretive framework for this parameter. In general, clumped isotope measurements indicate plausible formation temperatures for abiotic, thermogenic, and microbial methane in many geological environments, which is encouraging for the further development of this measurement as a geothermometer, and as a tracer for the source of natural gas reservoirs and emissions. We also highlight, however, instances where clumped isotope derived temperatures are higher than expected, and discuss possible factors that could distort equilibrium formation temperature signals. In microbial methane from freshwater ecosystems, in particular, clumped isotope values appear to be controlled by kinetic effects, and may ultimately be useful to study methanogen metabolism
Low-temperature zircon growth related to hydrothermal alteration of siderite concretions in Mississippian shales, Scotland
Zircon occurs in voids and cracks in phosphatic coprolites enclosed in siderite concretions in Mississippian shales near Edinburgh, Scotland. The zircon formed during hydrothermal alteration of early-diagenetic concretions and occurs as spherical aggregates of prismatic crystals, sometimes radiating. Vitrinite reflectance measurements indicate temperatures of ~270°C for the zircon-bearing concretions and the host shales. Molecular parameter values based on dibenzothiophene and phenanthrene distribution and occurrence of di- and tetra-hydro-products of polycyclic aromatic compounds suggest that the rocks experienced relatively high-temperature aqueous conditions related to hydrothermal fluids, perhaps associated with neighboring mafic intrusions. The zircon was dissolved from the concretions, transported in fluids, and reprecipitated in voids. This is the first record of the precipitation of authigenic zircon in sedimentary rock as a new phase, not as outgrowths
- …