Quasispecies Spatial Models for RNA Viruses with Different Replication Modes and Infection Strategies

Empirical observations and theoretical studies suggest that viruses may use different replication strategies to amplify their genomes, which impact the dynamics of mutation accumulation in viral populations and therefore, their fitness and virulence. Similarly, during natural infections, viruses replicate and infect cells that are rarely in suspension but spatially organized. Surprisingly, most quasispecies models of virus replication have ignored these two phenomena. In order to study these two viral characteristics, we have developed stochastic cellular automata models that simulate two different modes of replication (geometric vs stamping machine) for quasispecies replicating and spreading on a two-dimensional space. Furthermore, we explored these two replication models considering epistatic fitness landscapes (antagonistic vs synergistic) and different scenarios for cell-to-cell spread, one with free superinfection and another with superinfection inhibition. We found that the master sequences for populations replicating geometrically and with antagonistic fitness effects vanished at low critical mutation rates. By contrast, the highest critical mutation rate was observed for populations replicating geometrically but with a synergistic fitness landscape. Our simulations also showed that for stamping machine replication and antagonistic epistasis, a combination that appears to be common among plant viruses, populations further increased their robustness by inhibiting superinfection. We have also shown that the mode of replication strongly influenced the linkage between viral loci, which rapidly reached linkage equilibrium at increasing mutations for geometric replication. We also found that the strategy that minimized the time required to spread over the whole space was the stamping machine with antagonistic epistasis among mutations. Finally, our simulations revealed that the multiplicity of infection fluctuated but generically increased along time

Cytoprotection by Melatonin: The Metabolic Syndrome as an Example

Melatonin improves sleep efficiency and has antioxidant and anti-inflammatory properties, in part because of its function as a metabolic regulator and mitochondrial protector. As a chronobiotic/cytoprotective agent, melatonin may occupy a special place in the prevention and treatment of metabolic syndrome.Fil: Cardinali, Daniel Pedro. Pontificia Universidad Católica Argentina "Santa María de los Buenos Aires"; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Vigo, Daniel Eduardo. Pontificia Universidad Católica Argentina "Santa María de los Buenos Aires". Instituto de Investigaciones Biomédicas. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay. Instituto de Investigaciones Biomédicas; Argentin

Measuring sedimentation in tidal marshes:a review on methods and their applicability in biogeomorphological studies

<p>It is increasingly recognised that interactions between geomorphological and biotic processes control the functioning of many ecosystem types as described e.g. by the ecological theory of ecosystem engineering. Consequently, the need for specific bio-geomorphological research methods is growing recently. Much research on bio-geomorphological processes is done in coastal marshes. These areas provide clear examples of ecosystem engineering as well as other bio-geomorphological processes: Marsh vegetation slows down tidal currents and hence stimulates the process of sedimentation, while vice versa, the sedimentation controls ecological processes like vegetation succession. This review is meant to give insights in the various available methods to measure sedimentation, with special attention to their suitability to quantify bio-geomorphological interactions. The choice of method used to measure sedimentation is important to obtain the correct parameters to understand the biogeomorphology of tidal salt marshes. This review, therefore, aims to be a tool for decision making regarding the processes to be measured and the methods to be used. We, subdivide the methods into those measuring suspended sediment concentration (A), sediment deposition (B), accretion (C) and surface-elevation change (D). With this review, we would like to further encourage interdisciplinary studies in the fields of ecology and geomorphology.</p>