The atmospheric charged kaon/pion ratio using seasonal variation methods

Observed since the 1950's, the seasonal effect on underground muons is a well studied phenomenon. The interaction height of incident cosmic rays changes as the temperature of the atmosphere changes, which affects the production height of mesons (mostly pions and kaons). The decay of these mesons produces muons that can be detected underground. The production of muons is dominated by pion decay, and previous work did not include the effect of kaons. In this work, the methods of Barrett and MACRO are extended to include the effect of kaons. These efforts give rise to a new method to measure the atmospheric K/$\pi$ ratio at energies beyond the reach of current fixed target experiments. These methods were applied to data from the MINOS far detector. A method is developed for making these measurements at other underground detectors, including OPERA, Super-K, IceCube, Baksan and the MINOS near detector.Comment: 15 pages, 4 figures, submitted to Astropart. Phy

Knockdown of Selenocysteine-Specific Elongation Factor in \u3ci\u3eAmblyomma maculatum\u3c/i\u3e Alters the Pathogen Burden of \u3ci\u3eRickettsia parkeri\u3c/i\u3e with Epigenetic Control by the Sin3 Histone Deacetylase Corepressor Complex

Selenocysteine is the 21st naturally-occurring amino acid. Selenoproteins have diverse functions and many remain uncharacterized, but they are typically associated with antioxidant activity. The incorporation of selenocysteine into the nascent polypeptide chain recodes the TGA stop codon and this process depends upon a number of essential factors including the selenocysteine elongation factor (SEF). The transcriptional expression of SEF did not change significantly in tick midguts throughout the blood meal, but decreased in salivary glands to 20% at the end of the fast feeding phase. Since selenoprotein translation requires this specialized elongation factor, we targeted this gene for knockdown by RNAi to gain a global view of the role selenoproteins play in tick physiology. We found no significant differences in tick engorgement and embryogenesis but detected no antioxidant capacity in tick saliva. The transcriptional profile of selenoproteins in R. parkeri-infected Amblyomma maculatum revealed declined activity of selenoprotein M and catalase and increased activity of selenoprotein O, selenoprotein S, and selenoprotein T. Furthermore, the pathogen burden was significantly altered in SEF-knockdowns. We then determined the global impact of SEF-knockdown by RNA-seq, and mapped huge shifts in secretory gene expression that could be the result of downregulation of the Sin3 histone deacetylase corepressor complex

Adsorption of Streptococcus mutans on Chemically Treated Hydroxyapatite

Adsorption of Streptococcus mutans on hydroxyapatite and chemically treated hydroxyapatite was studied. Zeta potentials of the surfaces were measured. Chemically treated hydroxyapatite gave higher ζ potentials and lower S mutans adsorption.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/67845/2/10.1177_00220345780570091601.pd

Neutrino hierarchy from CP-blind observables with high density magnetized detectors

High density magnetized detectors are well suited to exploit the outstanding purity and intensities of novel neutrino sources like Neutrino Factories and Beta Beams. They can also provide independent measurements of leptonic mixing parameters through the observation of atmospheric muon-neutrinos. In this paper, we discuss the combination of these observables from a multi-kton iron detector and a high energy Beta Beam; in particular, we demonstrate that even with moderate detector granularities the neutrino mass hierarchy can be determined for $\theta_{13}$ values greater than 4$^\circ$.Comment: 16 pages, 7 figures. Added a new section discussing systematic errors (sec 5.2); sec.5.1 and 4 have been extended. Version to appear in EPJ

Spontaneous CP Violating Phase as the Phase in PMNS Matrix

We study the possibility of identifying the CP violating phases in the PMNS mixing matrix in the lepton sector and also that in the CKM mixing matrix in the quark sector with the phase responsible for the spontaneous CP violation in the Higgs potential, and some implications. Since the phase in the CKM mixing matrix is determined by experimental data, the phase in the lepton sector is therefore also fixed. The mass matrix for neutrinos is constrained leading to constraints on the Jarlskog CP violating parameter $J$, and the effective mass $$ for neutrinoless double beta decay. The Yukawa couplings are also constrained. Different ways of identifying the phases have different predictions for $\mu \to e e\bar e$ and $\tau \to l_1 l_2 \bar l_3$. Future experimental data can be used to distinguish different models.Comment: 16 pages, 3 figure

Measurement of Atmospheric Neutrino Oscillations with the ANTARES Neutrino Telescope

The data taken with the ANTARES neutrino telescope from 2007 to 2010, a total live time of 863 days, are used to measure the oscillation parameters of atmospheric neutrinos. Muon tracks are reconstructed with energies as low as 20 GeV. Neutrino oscillations will cause a suppression of vertical upgoing muon neutrinos of such energies crossing the Earth. The parameters determining the oscillation of atmospheric neutrinos are extracted by fitting the event rate as a function of the ratio of the estimated neutrino energy and reconstructed flight path through the Earth. Measurement contours of the oscillation parameters in a two-flavour approximation are derived. Assuming maximum mixing, a mass difference of $\Delta m_{32}^2=(3.1\pm 0.9)\cdot 10^{-3}$ eV$^2$ is obtained, in good agreement with the world average value.Comment: 9 pages, 5 figure

TRY plant trait database – enhanced coverage and open access

Plant traits—the morphological, anatomical, physiological, biochemical and phenological characteristics of plants—determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait‐based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits—almost complete coverage for ‘plant growth form’. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait–environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives

First measurement of θ<inf>13</inf> from delayed neutron capture on hydrogen in the Double Chooz experiment

The Double Chooz experiment has determined the value of the neutrino oscillation parameter θ13 from an analysis of inverse beta decay interactions with neutron capture on hydrogen. This analysis uses a three times larger fiducial volume than the standard Double Chooz assessment, which is restricted to a region doped with gadolinium (Gd), yielding an exposure of 113.1 GW-ton-years. The data sample used in this analysis is distinct from that of the Gd analysis, and the systematic uncertainties are also largely independent, with some exceptions, such as the reactor neutrino flux prediction. A combined rate- and energy-dependent fit finds sin22θ13=0.097±0.034 (stat.)±0.034 (syst.), excluding the no-oscillation hypothesis at 2.0. This result is consistent with previous measurements of sin22θ13