Multiple roles for UV RESISTANCE LOCUS8 in regulating gene expression and metabolite accumulation in arabidopsis under solar ultraviolet radiation

Photomorphogenic responses triggered by low fluence rates of ultraviolet B radiation (UV-B; 280–315 nm) are mediated by the UV-B photoreceptor UV RESISTANCE LOCUS8 (UVR8). Beyond our understanding of the molecular mechanisms of UV-B perception by UVR8, there is still limited information on how the UVR8 pathway functions under natural sunlight. Here, wild-type Arabidopsis (Arabidopsis thaliana) and the uvr8-2 mutant were used in an experiment outdoors where UV-A (315–400 nm) and UV-B irradiances were attenuated using plastic films. Gene expression, PYRIDOXINE BIOSYNTHESIS1 (PDX1) accumulation, and leaf metabolite signatures were analyzed. The results show that UVR8 is required for transcript accumulation of genes involved in UV protection, oxidative stress, hormone signal transduction, and defense against herbivores under solar UV. Under natural UV-A irradiance, UVR8 is likely to interact with UV-A/blue light signaling pathways to moderate UV-B-driven transcript and PDX1 accumulation. UVR8 both positively and negatively affects UV-A-regulated gene expression and metabolite accumulation but is required for the UV-B induction of phenolics. Moreover, UVR8-dependent UV-B acclimation during the early stages of plant development may enhance normal growth under long-term exposure to solar UV

Kepler Cycle 1 Observations of Low Mass Stars: New Eclipsing Binaries, Single Star Rotation Rates, and the Nature and Frequency of Starspots

We have analyzed Kepler light curves for 849 stars with T_eff < 5200 K from our Cycle 1 Guest Observer program. We identify six new eclipsing binaries, one of which has an orbital period of 29.91 d, and two of which are probably W UMa variables. In addition, we identify a candidate "warm Jupiter" exoplanet. We further examine a subset of 670 sources for variability. Of these objects, 265 stars clearly show periodic variability that we assign to rotation of the low-mass star. At the photometric precision level provided by Kepler, 251 of our objects showed no evidence for variability. We were unable to determine periods for 154 variable objects. We find that 79% of stars with T_eff < 5200 K are variable. The rotation periods we derive for the periodic variables span the range 0.31 < P_rot < 126.5 d. A considerable number of stars with rotation periods similar to the solar value show activity levels that are 100 times higher than the Sun. This is consistent with results for solar-like field stars. As has been found in previous studies, stars with shorter rotation periods generally exhibit larger modulations. This trend flattens beyond P_rot = 25 d, demonstrating that even long period binaries may still have components with high levels of activity and investigating whether the masses and radii of the stellar components in these systems are consistent with stellar models could remain problematic. Surprisingly, our modeling of the light curves suggests that the active regions on these cool stars are either preferentially located near the rotational poles, or that there are two spot groups located at lower latitudes, but in opposing hemispheres.Comment: 48 pages, 11 figure

A Uniform Search for Secondary Eclipses of Hot Jupiters in Kepler Q2 Lightcurves

We present the results of searching the Kepler Q2 public dataset for the secondary eclipses of 76 hot Jupiter planet candidates from the list of 1,235 candidates published by Borucki et al. (2011). This search has been performed by modeling both the Kepler PDC light curves and new light curves produced via our own photometric pipeline. We derive new stellar and planetary parameters for each system with robust errors. We find 16 systems with 1-2 sigma, 14 systems with 2-3 sigma, and 6 systems with >3 sigma confidence level secondary eclipse detections in at least one light curve. We find that the majority of detected planet candidates emit more light than expected due to thermal blackbody emission in the optical Kepler bandpass, and present a trend of increasing excess emission with decreasing maximum effective planetary temperature. We explore modeling biases, significant planetary albedos, non-LTE or other thermal emission, significant internal energy generation, and exoplanet mis-identification as possible causes of both the excess emission and its correlation with expected planetary temperature. Although we find no single cause is able to explain all of the planet candidates, significant planetary albedos, with a general trend of increasing planetary albedos with decreasing atmospheric temperatures, is able to explain most of the systems. We estimate an 11% false positive rate in the current Kepler planet candidate sample of hot Jupiters. We also establish robust upper limits on the eclipse depth for all systems, and find that a significant fraction of these systems have very low albedos, significantly augmenting and extending the sample of albedo determinations to planets as cool as 1200 K. Finally, we note that continued observations with Kepler, and improved techniques for the removal of systematic noise in the Kepler data, are needed to better characterize these systems.Comment: 33 pages, 9 figures, 3 tables. Submitted to the Astronomical Journal 9/13/2011. Accepted 12/4/201

SOPHIE velocimetry of Kepler transit candidates. V. The three hot Jupiters KOI-135b, KOI-204b and KOI-203b (alias Kepler-17b)

We report the discovery of two new transiting hot Jupiters, KOI-135b and KOI-204b, that were previously identified as planetary candidates by Borucki et al. 2011, and, independently of the Kepler team, confirm the planetary nature of Kepler-17b, recently announced by Desert et al. 2011. Radial-velocity measurements, taken with the SOPHIE spectrograph at the OHP, and Kepler photometry (Q1 and Q2 data) were used to derive the orbital, stellar and planetary parameters. KOI-135b and KOI-204b orbit their parent stars in 3.02 and 3.25 days, respectively. They have approximately the same radius, Rp=1.20+/-0.06 R_jup and 1.24+/-0.07 R_jup, but different masses Mp=3.23+/-0.19 M_jup and 1.02+/-0.07 M_jup. As a consequence, their bulk densities differ by a factor of four, rho_p=2.33+/-0.36 g.cm^-3 (KOI-135b) and 0.65+/-0.12 g.cm-3 (KOI-204b). Our SOPHIE spectra of Kepler-17b, used both to measure the radial-velocity variations and determine the atmospheric parameters of the host star, allow us to refine the characterisation of the planetary system. In particular we found the radial-velocity semi-amplitude and the stellar mass to be respectively slightly smaller and larger than Desert et al. These two quantities, however, compensate and lead to a planetary mass fully consistent with Desert et al.: our analysis gives Mp=2.47+/-0.10 M_jup and Rp=1.33+/-0.04 R_jup. We found evidence for a younger age of this planetary system, t<1.8 Gyr, which is supported by both evolutionary tracks and gyrochronology. Finally, we confirm the detection of the optical secondary eclipse and found also the brightness phase variation with the Q1 and Q2 Kepler data. The latter indicates a low redistribution of stellar heat to the night side (<16% at 1-sigma), if the optical planetary occultation comes entirely from thermal flux. The geometric albedo is A_g<0.12 (1-sigma).Comment: submitted to Astronomy and Astrophysic

A low-mass planet candidate orbiting Proxima Centauri at a distance of 1.5 AU

Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC).Our nearest neighbor, Proxima Centauri, hosts a temperate terrestrial planet. We detected in radial velocities evidence of a possible second planet with minimum mass m c sin i c = 5.8 ± 1.9 M ⊕ and orbital period P c = 5.21 - 0.22 + 0.26 years. The analysis of photometric data and spectro-scopic activity diagnostics does not explain the signal in terms of a stellar activity cycle, but follow-up is required in the coming years for confirming its planetary origin. We show that the existence of the planet can be ascertained, and its true mass can be determined with high accuracy, by combining Gaia astrometry and radial velocities. Proxima c could become a prime target for follow-up and characterization with next-generation direct imaging instrumentation due to the large maximum angular separation of ~1 arc second from the parent star. The candidate planet represents a challenge for the models of super-Earth formation and evolution.Peer reviewedFinal Published versio

Magnetic inflation and Stellar Mass. II. On the radii of wingle, rapidly rotating, fully convective M-dwarf stars

Main-sequence, fully convective M dwarfs in eclipsing binaries are observed to be larger than stellar evolutionary models predict by as much as 10%–15%. A proposed explanation for this discrepancy involves effects from strong magnetic fields, induced by rapid rotation via the dynamo process. Although, a handful of single, slowly rotating M dwarfs with radius measurements from interferometry also appear to be larger than models predict, suggesting that rotation or binarity specifically may not be the sole cause of the discrepancy. We test whether single, rapidly rotating, fully convective stars are also larger than expected by measuring their $R\sin i$ distribution. We combine photometric rotation periods from the literature with rotational broadening ($v\sin i$) measurements reported in this work for a sample of 88 rapidly rotating M dwarf stars. Using a Bayesian framework, we find that stellar evolutionary models underestimate the radii by 10 \% \mbox{--}15{ \% }_{-2.5}^{+3}, but that at higher masses (0.18 < M < 0.4 M Sun), the discrepancy is only about 6% and comparable to results from interferometry and eclipsing binaries. At the lowest masses (0.08 < M < 0.18 M Sun), we find that the discrepancy between observations and theory is 13%–18%, and we argue that the discrepancy is unlikely to be due to effects from age. Furthermore, we find no statistically significant radius discrepancy between our sample and the handful of M dwarfs with interferometric radii. We conclude that neither rotation nor binarity are responsible for the inflated radii of fully convective M dwarfs, and that all fully convective M dwarfs are larger than models predict.The authors would like to thank the referee for the thoughtful report, which greatly improved the manuscript. The authors would also like to thank Lisa Prato and Larissa Nofi for IGRINS training, and Heidi Larson, Jason Sanborn, and Andrew Hayslip for operating the DCT during our observations. We would also like to thank Jen Winters, Jonathan Irwin, Paul Dalba, Mark Veyette, Eunkyu Han, and Andrew Vanderburg for useful discussions and helpful comments on this work. Some of this work was supported by the NASA Exoplanet Research Program (XRP) under grant No. NNX15AG08G issued through the Science Mission Directorate.These results made use of the Lowell Observatory's Discovery Channel Telescope, supported by Discovery Communications, Inc., Boston University, the University of Maryland, the University of Toledo and Northern Arizona University; the Immersion Grating Infrared Spectrograph (IGRINS) that was developed under a collaboration between the University of Texas at Austin and the Korea Astronomy and Space Science Institute (KASI) with the financial support of the US National Science Foundation under grant AST-1229522, of the University of Texas at Austin, and of the Korean GMT Project of KASI; data taken at The McDonald Observatory of The University of Texas at Austin; and data products from the Two Micron All Sky Survey, which is a joint project of the University of Massachusetts and the Infrared Processing and Analysis Center/California Institute of Technology, funded by NASA and the NSF. (NNX15AG08G - NASA Exoplanet Research Program (XRP); Discovery Communications, Inc.; Boston University; University of Maryland; University of Toledo; Northern Arizona University; AST-1229522 - US National Science Foundation; University of Texas at Austin; Korean GMT Project of KASI; NASA; NSF

Synaptotagmin‐7 enhances calcium‐sensing of chromaffin cell granules and slows discharge of granule cargos

Synaptotagmin‐7 (Syt‐7) is one of two major calcium sensors for exocytosis in adrenal chromaffin cells, the other being synaptotagmin‐1 (Syt‐1). Despite a broad appreciation for the importance of Syt‐7, questions remain as to its localization, function in mediating discharge of dense core granule cargos, and role in triggering release in response to physiological stimulation. These questions were addressed using two distinct experimental preparations—mouse chromaffin cells lacking endogenous Syt‐7 (KO cells) and a reconstituted system employing cell‐derived granules expressing either Syt‐7 or Syt‐1. First, using immunofluorescence imaging and subcellular fractionation, it is shown that Syt‐7 is widely distributed in organelles, including dense core granules. Total internal reflection fluorescence (TIRF) imaging demonstrates that the kinetics and probability of granule fusion in Syt‐7 KO cells stimulated by a native secretagogue, acetylcholine, are markedly lower than in WT cells. When fusion is observed, fluorescent cargo proteins are discharged more rapidly when only Syt‐1 is available to facilitate release. To determine the extent to which the aforementioned results are attributable purely to Syt‐7, granules expressing only Syt‐7 or Syt‐1 were triggered to fuse on planar supported bilayers bearing plasma membrane SNARE proteins. Here, as in cells, Syt‐7 confers substantially greater calcium sensitivity to granule fusion than Syt‐1 and slows the rate at which cargos are released. Overall, this study demonstrates that by virtue of its high affinity for calcium and effects on fusion pore expansion, Syt‐7 plays a central role in regulating secretory output from adrenal chromaffin cells.Syt‐7 is a high‐affinity calcium sensor expressed on chromaffin cell dense core granules. The purpose of this study was to assess the role of Syt‐7 in regulating the secretory response to cholinergic stimulation. Acetylcholine elicits secretion by elevating cytosolic calcium. The calcium sensitivity of exocytosis in cells lacking Syt‐7 is impaired. Cells that lack Syt‐7 also release peptide hormones at faster rates, implicating a role for Syt‐7 in regulating the exocytotic fusion pore. These data demonstrate that Syt‐7 has an important role in triggering exocytosis in cells and is likely to play a role in controlling hormone output, in situ.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/162737/3/jnc14986.pdfhttp://deepblue.lib.umich.edu/bitstream/2027.42/162737/2/jnc14986-sup-0001-Supinfo.pdfhttp://deepblue.lib.umich.edu/bitstream/2027.42/162737/1/jnc14986_am.pd

Population genetic structure and predominance of cyclical parthenogenesis in the bird cherry–oat aphid Rhopalosiphum padi in England

Genetic diversity is determinant for pest species' success and vector competence. Understanding the ecological and evolutionary processes that determine the genetic diversity is fundamental to help identify the spatial scale at which pest populations are best managed. In the present study, we present the first comprehensive analysis of the genetic diversity and evolution of Rhopalosiphum padi, a major pest of cereals and a main vector of the barley yellow dwarf virus (BYDV), in England. We have used a genotyping by sequencing approach to study whether i) there is any underlying population genetic structure at a national and regional scale in this pest that can disperse long distances; ii) the populations evolve as a response to environmental change and selective pressures, and; iii) the populations comprise anholocyclic lineages. Individual R. padi were collected using the Rothamsted Insect Survey's suction‐trap network at several sites across England between 2004 and 2016 as part of the RIS long‐term nationwide surveillance. Results identified two genetic clusters in England that mostly corresponded to a North – South division, although gene flow is ongoing between the two subpopulations. These genetic clusters do not correspond to different life cycles types, and cyclical parthenogenesis is predominant in England. Results also show that there is dispersal with gene flow across England, although there is a reduction between the northern and southern sites with the Southwestern population being the most genetically differentiated. There is no evidence for isolation‐by‐distance and other factors like primary host distribution, uncommon in the south and absent in the southwest, could influence the dispersal patterns. Finally, results also show no evidence for the evolution of the R. padi population, and it is demographically stable despite the ongoing environmental change. These results are discussed in view of their relevance to pest management and the transmission of BYDV

Detection and extraction of signals from the epoch of reionization using higher-order one-point statistics

Detecting redshifted 21-cm emission from neutral hydrogen in the early Universe promises to give direct constraints on the epoch of reionization (EoR). It will, though, be very challenging to extract the cosmological signal (CS) from foregrounds and noise which are orders of magnitude larger. Fortunately, the signal has some characteristics which differentiate it from the foregrounds and noise, and we suggest that using the correct statistics may tease out signatures of reionization. We generate mock data cubes simulating the output of the Low Frequency Array (LOFAR) EoR experiment. These cubes combine realistic models for Galactic and extragalactic foregrounds and the noise with three different simulations of the CS. We fit out the foregrounds, which are smooth in the frequency direction, to produce residual images in each frequency band. We denoise these images and study the skewness of the one-point distribution in the images as a function of frequency. We find that, under sufficiently optimistic assumptions, we can recover the main features of the redshift evolution of the skewness in the 21-cm signal. We argue that some of these features ¿ such as a dip at the onset of reionization, followed by a rise towards its later stages ¿ may be generic, and give us a promising route to a statistical detection of reionization

Methane in the atmosphere of the transiting hot Neptune GJ436b?

We present an analysis of seven primary transit observations of the hot Neptune GJ436b at 3.6, 4.5 and $8~\mu$m obtained with the Infrared Array Camera (IRAC) on the Spitzer Space Telescope. After correcting for systematic effects, we fitted the light curves using the Markov Chain Monte Carlo technique. Combining these new data with the EPOXI, HST and ground-based $V, I, H$ and $K_s$ published observations, the range $0.5-10~\mu$m can be covered. Due to the low level of activity of GJ436, the effect of starspots on the combination of transits at different epochs is negligible at the accuracy of the dataset. Representative climate models were calculated by using a three-dimensional, pseudo-spectral general circulation model with idealised thermal forcing. Simulated transit spectra of GJ436b were generated using line-by-line radiative transfer models including the opacities of the molecular species expected to be present in such a planetary atmosphere. A new, ab-initio calculated, linelist for hot ammonia has been used for the first time. The photometric data observed at multiple wavelengths can be interpreted with methane being the dominant absorption after molecular hydrogen, possibly with minor contributions from ammonia, water and other molecules. No clear evidence of carbon monoxide and dioxide is found from transit photometry. We discuss this result in the light of a recent paper where photochemical disequilibrium is hypothesised to interpret secondary transit photometric data. We show that the emission photometric data are not incompatible with the presence of abundant methane, but further spectroscopic data are desirable to confirm this scenario.Comment: 19 pages, 10 figures, 1 table, Astrophysical Journal in pres