DISCOVERY AND FUNCTIONAL ANALYSES OF HESSIAN FLY EFFECTOR-ENCODING GENES

The Hessian fly - wheat system is a well-known model of gene-for-gene interac- tion between host plants and parasitic insects. The Hessian fly uses secreted effector proteins to control susceptible host plant physiology, transforming the plant cells in a nutritive tissue to support the developing insect larva. HF-resistant wheat cultivars employ resistance (R) proteins to perceive the insect avirulence effectors (Avr) and display defensive immune responses. This study is focused in the discovery and functional analyses of insect effector-encoding genes. Chapter one of this thesis offers an introduction about the molecular basis of HF-wheat interactions. In Chapter two, I present the genetic mapping of HF Avr genes vH6, vHdic and vH5 using a genome- wide strategy. Differences in SNP-allele frequencies obtained from whole-genome pool sequencing positioned vH6 and vHdic on two different genomic regions in the long arm of chromosome X2. vH5 was mapped on 1.3Mb of a proximal genomic region of chromosome A2 (Scaffold A2.7). Gene expression analyses permitted to identify two vHdic candiate genes. In chapter three, I propose that HF SSGP71 family members encode effectors that structurally resemble E3-ubiquitin-ligases. SSGP71 proteins contain putative F-box and leucine rich repeats (LRR) domains. Yeast 2-hybrid experiments showed that SSGP71 members interact with host plant Skp1-like proteins. In chapter four, I use bacterial T3SS-based delivery of proteins into plants to test candidate HF effector-encoding genes. Candidate vH13 failed to induce plant immune responses in H13-resistant wheat leaves when carried by Pseudomonas fluorescens. However, experiments with the plant pathogen Burkholderia glumae carrying candidates vH13 or vH16 suggest they might interfere with plant immunity in Nicotiana spp

Type 2 diabetes in Mexican workers exposed to a potential source of dioxins in the cement industry determined by a job exposure matrix

Artículos originales[ES] Propósito: Identificar asociación entre diabetes tipo 2 (DM2) en trabajadores Mexicanos con la exposición ocupacional a una fuente potencial de dioxinas de la industria cementera. Material y métodos: Se incluyeron 56 expedientes clínicos de trabajadores de la industria cementeracon diagnóstico de DM2; los controles lo constituyeron 56 expedientes clínicos de trabajadores de la misma industria pero sin DM2. La dosis diaria de exposición (DDE) a la fuente potencial de dioxinas por años trabajados se estimó a través de una matriz de exposición ocupacional y fue categorizada como baja, moderada y alta. El modelo de regresión logística que correlacionó la alta exposición a la fuente potencial de dioxinas (confinamiento de la escoria o clinker de cemento) por años trabajados y presencia de DM2 fue ajustada por antigüedad en el trabajo, la edad del paciente en la que se estableció el diagnóstico de DM2 y antecedente familiar de DM2. Resultados: la razón de momios para la presencia de DM2 en trabajadores con exposición moderada y alta a la fuente potencial de dioxinas en la industria cementera fue de 3.25 (1.10–9.57), p= 0.03, ajustada por antigüedad en el trabajo, edad del trabajador en la que se estableció el diagnóstico de DM2, y el antecedente familiar de DM2. Conclusiones: De acuerdo con los datos explorados en los expedientes clínicos de trabajadores de la industria cementera, existe asociación entre la alta exposición al confinamiento industrial de la escoria o clinker de cemento, como fuente potencial a dioxinas, y la presencia de DM2 con un modesto gradiente de dosis-respuesta. [EN] Purpose: To identify association between type 2 diabetes (DM2) with occupational exposure to potential dioxins source in Mexican cement industry workers. Materials and Methods: 56 medical files of cement industry workers with diagnosis of DM2 were included; 56 medical files of workers from the same industry without DM2 were the controls. The daily dose of exposure (DDE) to the potential dioxins source per work years was estimated by a job exposure matrix and categorized as low, moderate, and high. Logistic regression model that correlated high exposure to potential source of dioxins (cement clinker confinement) per work years and presence of DM2 was adjusted by work seniority, patient age at which DM2 diagnosis was established and DM2 familiar background. Results: the OR for the presence of DM2 in workers with moderate and high exposure to potential source of dioxins in the cement industry was 3.25 (1.10–9.57), p= 0.03, adjusted by work seniority, worker age at which DM2 diagnosis was established, and DM2 familiar background. Conclusions: In according with the data explored in the medical files of cement industry workers, there is an association between high exposure to the industrial confinement of the cement clinker as a potential source of dioxins and presence of DM2 in a modest dose-response gradient.N

Surgical site infection after gastrointestinal surgery in high-income, middle-income, and low-income countries: a prospective, international, multicentre cohort study

Background: Surgical site infection (SSI) is one of the most common infections associated with health care, but its importance as a global health priority is not fully understood. We quantified the burden of SSI after gastrointestinal surgery in countries in all parts of the world. Methods: This international, prospective, multicentre cohort study included consecutive patients undergoing elective or emergency gastrointestinal resection within 2-week time periods at any health-care facility in any country. Countries with participating centres were stratified into high-income, middle-income, and low-income groups according to the UN's Human Development Index (HDI). Data variables from the GlobalSurg 1 study and other studies that have been found to affect the likelihood of SSI were entered into risk adjustment models. The primary outcome measure was the 30-day SSI incidence (defined by US Centers for Disease Control and Prevention criteria for superficial and deep incisional SSI). Relationships with explanatory variables were examined using Bayesian multilevel logistic regression models. This trial is registered with ClinicalTrials.gov, number NCT02662231. Findings: Between Jan 4, 2016, and July 31, 2016, 13 265 records were submitted for analysis. 12 539 patients from 343 hospitals in 66 countries were included. 7339 (58·5%) patient were from high-HDI countries (193 hospitals in 30 countries), 3918 (31·2%) patients were from middle-HDI countries (82 hospitals in 18 countries), and 1282 (10·2%) patients were from low-HDI countries (68 hospitals in 18 countries). In total, 1538 (12·3%) patients had SSI within 30 days of surgery. The incidence of SSI varied between countries with high (691 [9·4%] of 7339 patients), middle (549 [14·0%] of 3918 patients), and low (298 [23·2%] of 1282) HDI (p < 0·001). The highest SSI incidence in each HDI group was after dirty surgery (102 [17·8%] of 574 patients in high-HDI countries; 74 [31·4%] of 236 patients in middle-HDI countries; 72 [39·8%] of 181 patients in low-HDI countries). Following risk factor adjustment, patients in low-HDI countries were at greatest risk of SSI (adjusted odds ratio 1·60, 95% credible interval 1·05–2·37; p=0·030). 132 (21·6%) of 610 patients with an SSI and a microbiology culture result had an infection that was resistant to the prophylactic antibiotic used. Resistant infections were detected in 49 (16·6%) of 295 patients in high-HDI countries, in 37 (19·8%) of 187 patients in middle-HDI countries, and in 46 (35·9%) of 128 patients in low-HDI countries (p < 0·001). Interpretation: Countries with a low HDI carry a disproportionately greater burden of SSI than countries with a middle or high HDI and might have higher rates of antibiotic resistance. In view of WHO recommendations on SSI prevention that highlight the absence of high-quality interventional research, urgent, pragmatic, randomised trials based in LMICs are needed to assess measures aiming to reduce this preventable complication

Global disparities in surgeons’ workloads, academic engagement and rest periods: the on-calL shIft fOr geNEral SurgeonS (LIONESS) study

: The workload of general surgeons is multifaceted, encompassing not only surgical procedures but also a myriad of other responsibilities. From April to May 2023, we conducted a CHERRIES-compliant internet-based survey analyzing clinical practice, academic engagement, and post-on-call rest. The questionnaire featured six sections with 35 questions. Statistical analysis used Chi-square tests, ANOVA, and logistic regression (SPSS® v. 28). The survey received a total of 1.046 responses (65.4%). Over 78.0% of responders came from Europe, 65.1% came from a general surgery unit; 92.8% of European and 87.5% of North American respondents were involved in research, compared to 71.7% in Africa. Europe led in publishing research studies (6.6 ± 8.6 yearly). Teaching involvement was high in North America (100%) and Africa (91.7%). Surgeons reported an average of 6.7 ± 4.9 on-call shifts per month, with European and North American surgeons experiencing 6.5 ± 4.9 and 7.8 ± 4.1 on-calls monthly, respectively. African surgeons had the highest on-call frequency (8.7 ± 6.1). Post-on-call, only 35.1% of respondents received a day off. Europeans were most likely (40%) to have a day off, while African surgeons were least likely (6.7%). On the adjusted multivariable analysis HDI (Human Development Index) (aOR 1.993) hospital capacity &gt; 400 beds (aOR 2.423), working in a specialty surgery unit (aOR 2.087), and making the on-call in-house (aOR 5.446), significantly predicted the likelihood of having a day off after an on-call shift. Our study revealed critical insights into the disparities in workload, access to research, and professional opportunities for surgeons across different continents, underscored by the HDI

De novo genome assembly and annotation of the coffee berry borer Hypothenemus hampei

Genome annotation - Supplementary Data for: A coffee berry borer (Hypothenemus hampei) genome assembly reveals a reduced chemosensory receptor gene repertoire and male-specific genome sequence

Pilot Testing of an Area-Wide Biological Control Strategy against the Coffee Berry Borer in Colombia Using African Parasitoids

The coffee berry borer (CBB), Hypothenemus hampei (Ferrari, 1867) (Coleoptera: Curculionidae: Scolytinae), native to Africa, is a major global insect pest of coffee. It has invaded many coffee production areas around the world that do not have natural enemies. In this study, two African parasitoids, Prorops nasuta Waterston (Hymenoptera: Bethylidae) and Phymastichus coffea Waterston (Hymenoptera: Eulophidae), were mass-reared for field release against H. hampei in Chinchiná, Colombia. More than 1.5 million wasps of each species were released on a 61-hectare coffee farm in replicated plots, resulting in parasitism rates of up to 7.7% for P. nasuta and 56.3% for P. coffea. This led to a maximum reduction in H. hampei field populations of 81% from dispersal coffee plots (old coffee crops before plant stumping) and 64.3% in colonization coffee plots (new coffee crops with active growing and fruiting plants) within the farm. As a result of this area-wide strategy, the percentage of CBB-infested coffee berries in colonization coffee plots decreased from 51.1 to 77.5% compared to coffee plots without parasitoid releases. This approach offers a promising alternative to the use of chemical insecticides and could be integrated into current pest management programs to control H. hampei

Genome-wide analysis of transposable elements in the coffee berry borer Hypothenemus hampei (Coleoptera: Curculionidae): description of novel families

Peer Revie

Surgical site infection after gastrointestinal surgery in children : an international, multicentre, prospective cohort study

Introduction Surgical site infection (SSI) is one of the most common healthcare-associated infections (HAIs). However, there is a lack of data available about SSI in children worldwide, especially from low-income and middle-income countries. This study aimed to estimate the incidence of SSI in children and associations between SSI and morbidity across human development settings. Methods A multicentre, international, prospective, validated cohort study of children aged under 16 years undergoing clean-contaminated, contaminated or dirty gastrointestinal surgery. Any hospital in the world providing paediatric surgery was eligible to contribute data between January and July 2016. The primary outcome was the incidence of SSI by 30 days. Relationships between explanatory variables and SSI were examined using multilevel logistic regression. Countries were stratified into high development, middle development and low development groups using the United Nations Human Development Index (HDI). Results Of 1159 children across 181 hospitals in 51 countries, 523 (45 center dot 1%) children were from high HDI, 397 (34 center dot 2%) from middle HDI and 239 (20 center dot 6%) from low HDI countries. The 30-day SSI rate was 6.3% (33/523) in high HDI, 12 center dot 8% (51/397) in middle HDI and 24 center dot 7% (59/239) in low HDI countries. SSI was associated with higher incidence of 30-day mortality, intervention, organ-space infection and other HAIs, with the highest rates seen in low HDI countries. Median length of stay in patients who had an SSI was longer (7.0 days), compared with 3.0 days in patients who did not have an SSI. Use of laparoscopy was associated with significantly lower SSI rates, even after accounting for HDI. Conclusion The odds of SSI in children is nearly four times greater in low HDI compared with high HDI countries. Policies to reduce SSI should be prioritised as part of the wider global agenda.Peer reviewe

A Massive Expansion of Effector Genes Underlies Gall-Formation in the Wheat Pest Mayetiola destructor

Gall-forming arthropods are highly specialized herbivores that, in combination with their hosts, produce extended phenotypes with unique morphologies [1]. Many are economically important, and others have improved our understanding of ecology and adaptive radiation [2]. However, the mechanisms that these arthropods use to induce plant galls are poorly understood. We sequenced the genome of the Hessian fly (Mayetiola destructor; Diptera: Cecidomyiidae), a plant parasitic gall midge and a pest of wheat (Triticum spp.), with the aim of identifying genic modifications that contribute to its plant-parasitic lifestyle. Among several adaptive modifications, we discovered an expansive reservoir of potential effector proteins. Nearly 5% of the 20,163 predicted gene models matched putative effector gene transcripts present in the M. destructor larval salivary gland. Another 466 putative effectors were discovered among the genes that have no sequence similarities in other organisms. The largest known arthropod gene family (family SSGP-71) was also discovered within the effector reservoir. SSGP-71 proteins lack sequence homologies to other proteins, but their structures resemble both ubiquitin E3 ligases in plants and E3-ligase-mimicking effectors in plant pathogenic bacteria. SSGP-71 proteins and wheat Skp proteins interact in vivo. Mutations in different SSGP-71 genes avoid the effector-triggered immunity that is directed by the wheat resistance genes H6 and H9. Results point to effectors as the agents responsible for arthropod-induced plant gall formation