48 research outputs found
Control of Noise in Chemical and Biochemical Information Processing
We review models and approaches for error-control in order to prevent the
buildup of noise when gates for digital chemical and biomolecular computing
based on (bio)chemical reaction processes are utilized to realize stable,
scalable networks for information processing. Solvable rate-equation models
illustrate several recently developed methodologies for gate-function
optimization. We also survey future challenges and possible new research
avenues.Comment: 39 pages, 8 figures, PD
Photoregulation of α-chymotrypsin activity in organic media : effects of bioimprinting
α-Chymotrypsin exhibits photoswitchable activities in an organic solvent after covalent modification of the protein backbone with thiophenefulgide active ester (2). The thiophenefulgide-modified α-chymotrypsin exhibits reversible photoisomerizable properties between states (3)-E and (3)-C. The modified α-chymotrypsin, where nine lysine residues are substituted by thiophenefulgide units, retains 60% of the activity of the native enzyme. The activities of thiophenefulgide-modified α-chymotrypsin toward esterification of N-acetyl-L-phenylalanine (4) by ethanol in cyclohexane are controlled by the configuration of the attached photoisomerizable component and by prior bioimprinting of the protein backbone with the reaction substrate (4). The esterification of (4) in cyclohexane using bioimprinted (3)-C is two-fold faster than in the presence of (3)-E. In the presence of a nonbioimprinted enzyme, esterification of (4) by (3)-C is five-fold faster than with (3)-E. The activity of bioimprinted (3)-E toward esterification of (4) is 4.5-fold higher than that of nonbioimprinted (3)-E. Switchable cyclic esterification of (4) is accomplished by sequential photoisomerization of the thiophenefulgide-modified α-chymotrypsin between states (3)-C and (3)-E