Rapid detection of A. pleuropneumoniae from clinical samples using recombinase polymerase amplification

Actinobacillus pleuropneumoniae (APP) is the causative agent of porcine pleuropneumonia, resulting in high economic impact worldwide. There are currently 19 known serovars of APP, with different ones being predominant in specific geographic regions. Outbreaks of pleuropneumonia, characterized by sudden respiratory difficulties and high mortality, can occur when infected pigs are brought into naïve herds, or by those carrying different serovars. Good biosecurity measures include regular diagnostic testing for surveillance purposes. Current gold standard diagnostic techniques lack sensitivity (bacterial culture), require expensive thermocycling machinery (PCR) and are time consuming (culture and PCR). Here we describe the development of an isothermal point-of-care diagnostic test - utilizing recombinase polymerase amplification (RPA) for the detection of APP, targeting the species-specific apxIVA gene. Our APP-RPA diagnostic test achieved a sensitivity of 10 copies/µL using a strain of APP serovar 8, which is the most prevalent serovar in the UK. Additionally, our APP-RPA assay achieved a clinical sensitivity and specificity of 84.3% and 100%, respectively, across 61 extracted clinical samples obtained from farms located in England and Portugal. Using a small subset (n = 14) of the lung tissue samples, we achieved a clinical sensitivity and specificity of 76.9% and 100%, respectively) using lung imprints made on FTA cards tested directly in the APP- RPA reaction. Our results demonstrate that our APP-RPA assay enables a suitable rapid and sensitive screening tool for this important veterinary pathogen

Valor nutritivo de silagens de capim-elefante enriquecidas com subproduto do processamento do maracujá.

Esta pesquisa foi realizada com o objetivo de avaliar o valor nutritivo de silagens de capim-elefante contendo níveis crescentes de subproduto desidratado de maracujá (SDM). Foram testados cinco níveis de adição de SDM (0,0; 3,5; 7,0; 10,5 e 14,0%) na dieta de 20 ovinos machos, não-castrados, segundo delineamento experimental inteiramente casualizado, com cinco tratamentos (níveis de adição) e quatro repetições. Foram estimados os consumos de MS (CMS), PB (CPB), FDN (CFDN) e FDA (CFDA), as digestibilidades aparentes da MS (DAMS), PB (DAPB), FDN (DAFDN), FDA (DAFDA) e hemicelulose (DAHEM), além dos valores de nutrientes digestíveis totais (NDT) e do balanço de nitrogênio (BN). Com a inclusão de SDM na ensilagem do capim-elefante, ocorreram elevações nos CMS e CPB, sem, no entanto, alterar os valores de CFDN e CFDA. As DAMS, DAPB e os valores de NDT e BN elevaram com a adição de SDM, mas as DAFDN, DAFDA e DAHEM não foram alteradas. A adição de SDM na ensilagem de capim-elefante é uma prática recomendável, pois o uso dessas silagens aumentou o consumo e a digestibilidade dos nutrientes e elevou a densidade energética da dieta. Palavras

Eco-friendly preparation of electrically conductive chitosan - reduced graphene oxide flexible bionanocomposites for food packaging and biological applications

Electrically conductive materials have been highlighted in the biomedical and food packaging areas. Conventional electrically conductive polymers have limited biodegradability and biocompatibility and should be replaced by suitable biomaterials. Herein, electrically conductive bionanocomposites of chitosan and reduced graphene oxide were produced by a green methodology. The reduced graphene oxide was hydrothermally reduced in the presence of caffeic acid and was dispersed into chitosan. The final bionanocomposites achieved an electrical conductivity of 0.7 S/m in-plane and 2.1 × 10−5 S/m through-plane. The reduced graphene oxide promoted a great enhancement of antioxidant activity and a mechanical reinforcement of chitosan matrix, increasing the tensile strength and decreasing the water solubility. The electrical conductivity, mechanical properties and antioxidant activity of the bionanocomposites can be tuned according to the filler content. These active bionanocomposites, prepared using a green methodology, revealed good electrical and mechanical properties, which make them promising materials for food packaging and biological applications.publishe

Amphibianâ killing chytrid in Brazil comprises both locally endemic and globally expanding populations

Chytridiomycosis, caused by the fungus Batrachochytrium dendrobatidis (Bd), is the emerging infectious disease implicated in recent population declines and extinctions of amphibian species worldwide. Bd strains from regions of diseaseâ associated amphibian decline to date have all belonged to a single, hypervirulent clonal genotype (Bdâ GPL). However, earlier studies in the Atlantic Forest of southeastern Brazil detected a novel, putatively enzootic lineage (Bdâ Brazil), and indicated hybridization between Bdâ GPL and Bdâ Brazil. Here, we characterize the spatial distribution and population history of these sympatric lineages in the Brazilian Atlantic Forest. To investigate the genetic structure of Bd in this region, we collected and genotyped Bd strains along a 2400â km transect of the Atlantic Forest. Bdâ Brazil genotypes were restricted to a narrow geographic range in the southern Atlantic Forest, while Bdâ GPL strains were widespread and largely geographically unstructured. Bd population genetics in this region support the hypothesis that the recently discovered Brazilian lineage is enzootic in the Atlantic Forest of Brazil and that Bdâ GPL is a more recently expanded invasive. We collected additional hybrid isolates that demonstrate the recurrence of hybridization between panzootic and enzootic lineages, thereby confirming the existence of a hybrid zone in the Serra da Graciosa mountain range of Paraná State. Our field observations suggest that Bdâ GPL may be more infective towards native Brazilian amphibians, and potentially more effective at dispersing across a fragmented landscape. We also provide further evidence of pathogen translocations mediated by the Brazilian ranaculture industry with implications for regulations and policies on global amphibian trade.See also the Perspective by Ghosh and FisherPeer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/122445/1/mec13599.pdfhttp://deepblue.lib.umich.edu/bitstream/2027.42/122445/2/mec13599_am.pd

EUSEDcollab: a network of data from European catchments to monitor net soil erosion by water

As a network of researchers we release an open-access database (EUSEDcollab) of water discharge and suspended sediment yield time series records collected in small to medium sized catchments in Europe. EUSEDcollab is compiled to overcome the scarcity of open-access data at relevant spatial scales for studies on runoff, soil loss by water erosion and sediment delivery. Multi-source measurement data from numerous researchers and institutions were harmonised into a common time series and metadata structure. Data reuse is facilitated through accompanying metadata descriptors providing background technical information for each monitoring station setup. Across ten European countries, EUSEDcollab covers over 1600 catchment years of data from 245 catchments at event (11 catchments), daily (22 catchments) and monthly (212 catchments) temporal resolution, and is unique in its focus on small to medium catchment drainage areas (median = 43 km(2), min = 0.04 km(2), max = 817 km(2)) with applicability for soil erosion research. We release this database with the aim of uniting people, knowledge and data through the European Union Soil Observatory (EUSO)

Nitrosylation of Myoglobin and Nitrosation of Cysteine by Nitrite in a Model System Simulating Meat Curing

Demand is growing for meat products cured without the addition of sodium nitrite. Instead of the direct addition of nitrite to meat in formulation, nitrite is supplied by bacterial reduction of natural nitrate often added as vegetable juice/powder. However, the rate of nitrite formation in this process is relatively slow, and the total ingoing nitrite is typically less than in conventional curing processes. The objective of this study was to determine the impact of the rate of addition of nitrite and the amount of nitrite added on nitrosylation/nitrosation reactions in a model meat curing system. Myoglobin was preferentially nitrosylated as no decrease in sulfhydryl groups was found until maximum nitrosylmyoglobin color was achieved. The cysteine–myoglobin model retained more sulfhydryl groups than the cysteine-only model (p \u3c 0.05). The rate of nitrite addition did not alter nitrosylation/nitrosation reactions (p \u3e 0.05). These data suggest that the amount of nitrite but not the rate of addition impacts the nitrosylation/nitrosation reactions this syste

Hunt for new phenomena using large jet multiplicities and missing transverse momentum with ATLAS in 4.7 fb−1 of s√=7TeV proton-proton collisions

Results are presented of a search for new particles decaying to large numbers of jets in association with missing transverse momentum, using 4.7 fb−1 of pp collision data at s√=7TeV collected by the ATLAS experiment at the Large Hadron Collider in 2011. The event selection requires missing transverse momentum, no isolated electrons or muons, and from ≥6 to ≥9 jets. No evidence is found for physics beyond the Standard Model. The results are interpreted in the context of a MSUGRA/CMSSM supersymmetric model, where, for large universal scalar mass m 0, gluino masses smaller than 840 GeV are excluded at the 95% confidence level, extending previously published limits. Within a simplified model containing only a gluino octet and a neutralino, gluino masses smaller than 870 GeV are similarly excluded for neutralino masses below 100 GeV

Single hadron response measurement and calorimeter jet energy scale uncertainty with the ATLAS detector at the LHC

The uncertainty on the calorimeter energy response to jets of particles is derived for the ATLAS experiment at the Large Hadron Collider (LHC). First, the calorimeter response to single isolated charged hadrons is measured and compared to the Monte Carlo simulation using proton-proton collisions at centre-of-mass energies of sqrt(s) = 900 GeV and 7 TeV collected during 2009 and 2010. Then, using the decay of K_s and Lambda particles, the calorimeter response to specific types of particles (positively and negatively charged pions, protons, and anti-protons) is measured and compared to the Monte Carlo predictions. Finally, the jet energy scale uncertainty is determined by propagating the response uncertainty for single charged and neutral particles to jets. The response uncertainty is 2-5% for central isolated hadrons and 1-3% for the final calorimeter jet energy scale.Comment: 24 pages plus author list (36 pages total), 23 figures, 1 table, submitted to European Physical Journal