A new peat bog testate amoeba transfer function and quantitative palaeohydrological reconstructions from southern Patagonia

Testate amoebae have been extensively used as proxies for environmental change and palaeoclimate reconstructions in European and North American peatlands. The presence of these micro-organisms near the peat surface is generally significantly linked to the local water table depth (WTD) and therefore preservation of the amoeba shells downcore allows for water table reconstructions over millennia. In the last decades, attention for the palaeoecology of the southern Patagonian peat bogs has increased, partly because of the particular climatological setting under the influence of the southern westerlies. These atypical peat bogs are characterised by a wide range of water tables, from wet hollows to hummocks exceeding 100 cm above the water table, and a dominance of Sphagnum magellanicum on low lawns up to the highest hummocks. Here we present the first transfer function for this region that allows for reliable WTD reconstructions, along with 2k-year palaeorecords from local peat bogs.A modern dataset (155 samples) was sampled along transects from five bogs in 2012 and 2013. Measurements of WTD, pH and conductivity were taken for all samples. Transfer function model was based on the 2012 dataset while the 2013 samples served as an independent test set to validate the model. Besides the standard leave-one- out cross-validation we applied leave-one-site-out and leave-one transect-out cross-validation, which are effective means of verifying the degree of clustering in the dataset. To assure the environmental gradient had been evenly sampled we quantified the root-mean-squared error of prediction (RMSEP) individually for segments of this gradient.Ordinations showed a clear hydrological gradient in amoeba assemblages, with the dominant Assulina muscorum at the dry end and Amphitrema wrightianum and Difflugia globulosa at the wet end. Taxa as Nebela certesi and Nebela cockayni, possibly exclusive to the southern hemisphere, were identified and their optima and tolerances were determined. Canonical correspondence analysis showed that WTD was the most important environmental variable, accounting for 18% of the variance in amoeba assemblages. A weighted averaging-partial least squares model showed best performance in cross-validation and using the 2013 data as an independent test set. Any spatial autocorrelation was minimal although the model still appeared less effective in predicting WTD for sites not included in the training set. The segment-wise RMSEP showed that the WTD gradient was generally evenly sampled with RMSEP below 15 cm for most of the gradient, much lower than the standard deviation of the mean of all WTDs (26 cm).Preliminary results from peat cores sampled from the same peat bogs show surprisingly stable water tables over the last 2k years in Andorra bog but more variation in nearby Tierra Australis bog. Peat accumulation rates in Andorra bog are among the highest recorded in temperate bogs with around 4 m of peat accumulated during the last 2000 year

Spatial variation of hydroclimate in north-eastern North America during the last millennium

Climatic expressions of the Medieval Climate Anomaly (MCA) and the Little Ice Age (LIA) vary regionally, with reconstructions often depicting complex spatial patterns of temperature and precipitation change. The characterisation of these spatial patterns helps advance understanding of hydroclimate variability and associated responses of human and natural systems to climate change. Many regions, including north-eastern North America, still lack well-resolved records of past hydrological change. Here, we reconstruct hydroclimatic change over the past millennium using testate amoeba-inferred peatland water table depth reconstructions obtained from fifteen peatlands across Maine, Nova Scotia, Newfoundland and Québec. Spatial comparisons of reconstructed water table depths reveal complex hydroclimatic patterns that varied over the last millennium. The records suggest a spatially divergent pattern across the region during the Medieval Climate Anomaly and the Little Ice Age. Southern peatlands were wetter during the Medieval Climate Anomaly, whilst northern and more continental sites were drier. There is no evidence at the multi-decadal sampling resolution of this study to indicate that Medieval mega-droughts recorded in the west and continental interior of North America extended to these peatlands in the north-east of the continent. Reconstructed Little Ice Age hydroclimate change was spatially variable rather than displaying a clear directional shift or latitudinal trends, which may relate to local temporary permafrost aggradation in northern sites, and reconstructed characteristics of some dry periods during the Little Ice Age are comparable with those reconstructed during the Medieval Climate Anomaly. The spatial hydroclimatic trends identified here suggest that over the last millennium, peatland moisture balance in north-eastern North America has been influenced by changes in the Polar Jet Stream, storm activities and sea surface temperatures in the North Atlantic as well as internal peatland dynamics

A 24,000-year ancient DNA and pollen record from the Polar Urals reveals temporal dynamics of arctic and boreal plant communities

A 24,000-year record of plant community dynamics, based on pollen and ancient DNA from the sediments (sedaDNA) of Lake Bolshoye Shchuchye in the Polar Ural Mountains, provides detailed information on the flora of the Last Glacial Maximum (LGM) and also changes in plant community composition and dominance. It greatly improves on incomplete records from short and fragmented stratigraphic sequences found in exposed sedimentary sections in the western Russian Arctic. In total, 162 plant taxa were detected by sedaDNA and 115 by pollen analysis. Several shifts in dominance between and within plant functional groups occurred over the studied period, but most taxa appear to have survived in situ. A diverse arctic-alpine herb flora characterised the interval ca. 24,000–17,000 cal years BP and persisted into the Holocene. Around 17,000 cal years BP, sedges (e.g. Carex) and bryophytes (e.g. Bryum, Aulacomnium) increased. The establishment of shrub-tundra communities of Dryas and Vaccinium sp., with potentially some Betula pubescens trees (influx ∼290 grains cm2 year−1), followed at ca. 15,000 cal years BP. Forest taxa such as Picea and ferns (e.g. Dryopteris fragrans, Gymnocarpium dryopteris) established near the lake from ca. 10,000 cal years BP, followed by the establishment of Larix trees from ca. 9000 cal years BP. Picea began to decline from ca. 7000 cal years BP. A complete withdrawal of forest tree taxa occurred by ca. 4000 cal years BP, presumably due to decreasing growing-season temperatures, allowing the expansion of dwarf-shrub tundra and a diverse herb community similar to the present-day vegetation mosaic. Contrary to some earlier comparative studies, sedaDNA and pollen from Lake Bolshoye Shchuchye showed high similarity in the timing of compositional changes and the occurrence of key plant taxa. The sedaDNA record revealed several features that the pollen stratigraphy and earlier palaeorecords in the region failed to detect; a sustained, long-term increase in floristic richness since the LGM until the early Holocene, turnover in grass and forb genera over the Pleistocene-Holocene transition, persistence of a diverse arctic-alpine flora over the late Quaternary, and a variable bryophyte flora through time. As pollen records are often limited by taxonomic resolution, differential productivity and dispersal, sedaDNA can provide improved estimates of floristic richness and is better able to distinguish between different plant assemblages. However, pollen remains superior at providing quantitative estimates of plant abundance changes and detecting several diverse groups (e.g. Poaceae, Cyperaceae, Asteraceae) which may be underreported in the sedaDNA. Joint use of the two proxies provided unprecedented floristic detail of past plant communities and helped to distinguish between long-distance transport of pollen and local presence, particularly for woody plant taxa

Steppe-tundra composition and deglacial floristic turnover in interior Alaska revealed by sedimentary ancient DNA (sedaDNA)

When tracing vegetation dynamics over long timescales, obtaining enough floristic information to gain a detailed understanding of past communities and their transitions can be challenging. The first high-resolution sedimentary DNA (sedaDNA) metabarcoding record from lake sediments in Alaska—reported here—covers nearly 15,000 years of change. It shows in unprecedented detail the composition of late-Pleistocene “steppe-tundra” vegetation of ice-free Alaska, part of an intriguing late-Quaternary “no-analogue” biome, and it covers the subsequent changes that led to the development of modern spruce-dominated boreal forest. The site (Chisholm Lake) lies close to key archaeological sites, and the record throws new light on the landscape and resources available to early humans. Initially, vegetation was dominated by forbs found in modern tundra and/or subarctic steppe vegetation (e.g., Potentilla, Draba, Eritrichium, Anemone patens), and graminoids (e.g., Bromus pumpellianus, Festuca, Calamagrostis, Puccinellia), with Salix the only prominent woody taxon. Predominantly xeric, warm-to-cold habitats are indicated, and we explain the mixed ecological preferences of the fossil assemblages as a topo-mosaic strongly affected by insolation load. At ca. 14,500 cal yr BP (calendar years before C.E. 1950), about the same time as well documented human arrivals and coincident with an increase in effective moisture, Betula expanded. Graminoids became less abundant, but many open-ground forb taxa persisted. This woody-herbaceous mosaic is compatible with the observed persistence of Pleistocene megafaunal species (animals weighing ≥44 kg)—important resources for early humans. The greatest taxonomic turnover, marking a transition to regional woodland and a further moisture increase, began ca. 11,000 cal yr BP when Populus expanded, along with new shrub taxa (e.g., Shepherdia, Eleagnus, Rubus, Viburnum). Picea then expanded ca. 9500 cal yr BP, along with shrub and forb taxa typical of evergreen boreal woodland (e.g., Spiraea, Cornus, Linnaea). We found no evidence for Picea in the late Pleistocene, however. Most taxa present today were established by ca. 5000 cal yr BP after almost complete taxonomic turnover since the start of the record (though Larix appeared only at ca. 1500 cal yr BP). Prominent fluctuations in aquatic communities ca. 14,000–9,500 cal yr BP are probably related to lake-level fluctuations prior to the lake reaching its high, near-modern depth ca. 8,000 cal yr BP

Significance testing testate amoeba water table reconstructions

Transfer functions are valuable tools in palaeoecology, but their output may not always be meaningful. A recently-developed statistical test ('randomTF') offers the potential to distinguish among reconstructions which are more likely to be useful, and those less so. We applied this test to a large number of reconstructions of peatland water table depth based on testate amoebae. Contrary to our expectations, a substantial majority (25 of 30) of these reconstructions gave non-significant results (P > 0.05). The underlying reasons for this outcome are unclear. We found no significant correlation between randomTF P-value and transfer function performance, the properties of the training set and reconstruction, or measures of transfer function fit. These results give cause for concern but we believe it would be extremely premature to discount the results of non-significant reconstructions. We stress the need for more critical assessment of transfer function output, replication of results and ecologically-informed interpretation of palaeoecological data

Velocity-space sensitivity of the time-of-flight neutron spectrometer at JET

The velocity-space sensitivities of fast-ion diagnostics are often described by so-called weight functions. Recently, we formulated weight functions showing the velocity-space sensitivity of the often dominant beam-target part of neutron energy spectra. These weight functions for neutron emission spectrometry (NES) are independent of the particular NES diagnostic. Here we apply these NES weight functions to the time-of-flight spectrometer TOFOR at JET. By taking the instrumental response function of TOFOR into account, we calculate time-of-flight NES weight functions that enable us to directly determine the velocity-space sensitivity of a given part of a measured time-of-flight spectrum from TOFOR

(Anti-)deuteron production in pp collisions at 1as=13TeV

The study of (anti-)deuteron production in pp collisions has proven to be a powerful tool to investigate the formation mechanism of loosely bound states in high-energy hadronic collisions. In this paper the production of (anti-)deuterons is studied as a function of the charged particle multiplicity in inelastic pp collisions at s=13 TeV using the ALICE experiment. Thanks to the large number of accumulated minimum bias events, it has been possible to measure (anti-)deuteron production in pp collisions up to the same charged particle multiplicity (d Nch/ d \u3b7 3c 26) as measured in p\u2013Pb collisions at similar centre-of-mass energies. Within the uncertainties, the deuteron yield in pp collisions resembles the one in p\u2013Pb interactions, suggesting a common formation mechanism behind the production of light nuclei in hadronic interactions. In this context the measurements are compared with the expectations of coalescence and statistical hadronisation models (SHM)

Relationship of edge localized mode burst times with divertor flux loop signal phase in JET

A phase relationship is identified between sequential edge localized modes (ELMs) occurrence times in a set of H-mode tokamak plasmas to the voltage measured in full flux azimuthal loops in the divertor region. We focus on plasmas in the Joint European Torus where a steady H-mode is sustained over several seconds, during which ELMs are observed in the Be II emission at the divertor. The ELMs analysed arise from intrinsic ELMing, in that there is no deliberate intent to control the ELMing process by external means. We use ELM timings derived from the Be II signal to perform direct time domain analysis of the full flux loop VLD2 and VLD3 signals, which provide a high cadence global measurement proportional to the voltage induced by changes in poloidal magnetic flux. Specifically, we examine how the time interval between pairs of successive ELMs is linked to the time-evolving phase of the full flux loop signals. Each ELM produces a clear early pulse in the full flux loop signals, whose peak time is used to condition our analysis. The arrival time of the following ELM, relative to this pulse, is found to fall into one of two categories: (i) prompt ELMs, which are directly paced by the initial response seen in the flux loop signals; and (ii) all other ELMs, which occur after the initial response of the full flux loop signals has decayed in amplitude. The times at which ELMs in category (ii) occur, relative to the first ELM of the pair, are clustered at times when the instantaneous phase of the full flux loop signal is close to its value at the time of the first ELM

J/psi production as a function of charged-particle pseudorapidity density in p-Pb collisions at root s(NN)=5.02 TeV

We report measurements of the inclusive J/ψ yield and average transverse momentum as a function of charged-particle pseudorapidity density dNch/dη in p–Pb collisions at sNN=5.02TeV with ALICE at the LHC. The observables are normalised to their corresponding averages in non-single diffractive events. An increase of the normalised J/ψ yield with normalised dNch/dη, measured at mid-rapidity, is observed at mid-rapidity and backward rapidity. At forward rapidity, a saturation of the relative yield is observed for high charged-particle multiplicities. The normalised average transverse momentum at forward and backward rapidities increases with multiplicity at low multiplicities and saturates beyond moderate multiplicities. In addition, the forward-to-backward nuclear modification factor ratio is also reported, showing an increasing suppression of J/ψ production at forward rapidity with respect to backward rapidity for increasing charged-particle multiplicity