Performance evaluation of unified medical language system®'s synonyms expansion to query PubMed

<p>Abstract</p> <p>Background</p> <p>PubMed is the main access to medical literature on the Internet. In order to enhance the performance of its information retrieval tools, primarily non-indexed citations, the authors propose a method: expanding users' queries using Unified Medical Language System' (UMLS) synonyms i.e. all the terms gathered under one unique Concept Unique Identifier.</p> <p>Methods</p> <p>This method was evaluated using queries constructed to emphasize the differences between this new method and the current PubMed automatic term mapping. Four experts assessed citation relevance.</p> <p>Results</p> <p>Using UMLS, we were able to retrieve new citations in 45.5% of queries, which implies a small increase in recall. The new strategy led to a heterogeneous 23.7% mean increase in non-indexed citation retrieved. Of these, 82% have been published less than 4 months earlier. The overall mean precision was 48.4% but differed according to the evaluators, ranging from 36.7% to 88.1% (Inter rater agreement was poor: kappa = 0.34).</p> <p>Conclusions</p> <p>This study highlights the need for specific search tools for each type of user and use-cases. The proposed strategy may be useful to retrieve recent scientific advancement.</p

Once is an Instance, Twice is a Hobby: Multiple Optical and Near-Infrared Changing-Look Events in NGC 5273

NGC 5273 is a known optical and X-ray variable AGN. We analyze new and archival IR, optical, UV, and X-ray data in order to characterize its long-term variability from 2000 to 2022. At least one changing-look event occurred between 2011 and 2014, when the AGN changed from a Type 1.8/1.9 Seyfert to a Type 1. It then faded considerably at all wavelengths, followed by a dramatic but slow increase in UV/optical brightness between 2021 and 2022. We propose that NGC 5273 underwent multiple changing-look events between 2000 and 2022 -- starting as a Type 1.8/1.9, NGC 5273 changes-look to a Type 1 only temporarily in 2002 and again in 2014, reverting back to a Type 1.8/1.9 by 2005 and 2017, respectively. In 2022, it is again a Type 1 Seyfert with optical and NIR broad emission lines. We characterize the changing-look events and their connection to the dynamic accretion and radiative processes in NGC 5273.Comment: 18 pages, 13 figures, 4 tables, submitting to MNRA

ENIGMA-anxiety working group: Rationale for and organization of large-scale neuroimaging studies of anxiety disorders

Anxiety disorders are highly prevalent and disabling but seem particularly tractable to investigation with translational neuroscience methodologies. Neuroimaging has informed our understanding of the neurobiology of anxiety disorders, but research has been limited by small sample sizes and low statistical power, as well as heterogenous imaging methodology. The ENIGMA‐Anxiety Working Group has brought together researchers from around the world, in a harmonized and coordinated effort to address these challenges and generate more robust and reproducible findings. This paper elaborates on the concepts and methods informing the work of the working group to date, and describes the initial approach of the four subgroups studying generalized anxiety disorder, panic disorder, social anxiety disorder, and specific phobia. At present, the ENIGMA‐Anxiety database contains information about more than 100 unique samples, from 16 countries and 59 institutes. Future directions include examining additional imaging modalities, integrating imaging and genetic data, and collaborating with other ENIGMA working groups. The ENIGMA consortium creates synergy at the intersection of global mental health and clinical neuroscience, and the ENIGMA‐Anxiety Working Group extends the promise of this approach to neuroimaging research on anxiety disorders

A Tale of Two Type Ia Supernovae: The Fast-declining Siblings SNe 2015bo and 1997cn

We thank the anonymous referee for their comments. W.B.H. acknowledges support from the Research Experience for Undergraduates program at the Institute for Astronomy, University of Hawaii-Manoa, funded through NSF grant #2050710. L.G. acknowledges financial support from the Spanish Ministry of Science, Innovation and Universities (MCIN) under the 2019 Ramon y Cajal program RYC2019-027683 and from the Spanish MCIN project HOSTFLOWS PID2020-115253GA-I00. M.G.M., R.G.D., and S.M.T. were funded by the European Union's Horizon 2020 research and innovation program under the Marie Skodowska-Curie grant agreement No. 839090. Based on observations collected at the European Southern Observatory under ESO program 106.2104. The work of the CSP-II has been generously supported by the National Science Foundation under grant Nos. AST-1008343, AST-1613426, AST-1613455, and AST-1613472. The CSP-II was also supported in part by the Danish Agency for Science and Technology and Innovation through a Sapere Aude Level 2 grant. E.B. was partially supported by NASA grant No. 80NSSC20K0538 J.D.L. acknowledges support from a UK Research and Innovation Fellowship (MR/T020784/1). C.R.B. acknowledges support from NSF grant Nos. AST-1008384, AST-1613426, AST-1613455, and AST-1613472. M.S and S.H. are supported by grants from the VILLUM FONDEN (grant No. 28021) and the Independent Research Fund Denmark (IRFD; 8021-00170B).We present optical and near-infrared photometric and spectroscopic observations of the fast-declining Type Ia supernova (SN) 2015bo. SN 2015bo is underluminous (MB=−17.50 ± 0.15 mag) and has a fast-evolving light curve (Δm15(B)=1.91 ± 0.01 mag and sBV=0.48 ± 0.01). It has a unique morphology in the observed V −r color curve, where it is bluer than all other supernovae (SNe) in the comparison sample. A 56Ni mass of 0.17±0.03Me was derived from the peak bolometric luminosity, which is consistent with its location on the luminosity–width relation. Spectroscopically, SN 2015bo is a cool SN in the Branch classification scheme. The velocity evolution measured from spectral features is consistent with 1991bg-like SNe. SN 2015bo has a SN twin (similar spectra) and sibling (same host galaxy), SN 1997cn. Distance moduli of μ=34.33±0.01 (stat)± 0.11 (sys) mag and μ=34.34±0.04 (stat)±0.12 (sys) mag are derived for SN 2015bo and SN 1997cn, respectively. These distances are consistent at the 0.06σ level with each other, and they are also consistent with distances derived using surface-brightness fluctuations and redshift-corrected cosmology. This suggests that fast-declining SNe could be accurate distance indicators, which should not be excluded from future cosmological analyses.Research Experience for Undergraduates program at the Institute for Astronomy, University of Hawaii-ManoaNational Science Foundation (NSF) AST-1008384 AST-1613426 AST-1613455 AST-1613472Spanish Ministry of Science, Innovation and Universities (MCIN) RYC2019-027683Spanish MCIN project HOSTFLOWS PID2020-115253GA-I00European Union's Horizon 2020 research and innovation program under the Marie Skodowska-Curie 839090 106.2104National Science Foundation (NSF) AST-1613426 AST-1613455 AST-1613472 AST-1008343Danish Agency for Science and Technology and Innovation through a Sapere Aude Level 2 grantNational Aeronautics & Space Administration (NASA) 80NSSC20K0538UK Research and Innovation Fellowship MR/T020784/1Villum Fonden 28021Independent Research Fund Denmark 8021-00170

Discovery and Follow-up of ASASSN-23bd (AT 2023clx): The Lowest Redshift and Least Luminous Tidal Disruption Event To Date

We report the All-Sky Automated Survey for SuperNovae discovery of the tidal disruption event (TDE) ASASSN-23bd (AT 2023clx) in NGC 3799, a LINER galaxy with no evidence of strong AGN activity over the past decade. With a redshift of $z = 0.01107$ and a peak UV/optical luminosity of $(5.4\pm0.4)\times10^{42}$ erg s$^{-1}$, ASASSN-23bd is the lowest-redshift and least-luminous TDE discovered to date. Spectroscopically, ASASSN-23bd shows H$\alpha$ and He I emission throughout its spectral time series, and the UV spectrum shows nitrogen lines without the strong carbon and magnesium lines typically seen for AGN. Fits to the rising ASAS-SN light curve show that ASASSN-23bd started to brighten on MJD 59988$^{+1}_{-1}$, $\sim$9 days before discovery, with a nearly linear rise in flux, peaking in the $g$ band on MJD $60000^{+3}_{-3}$. Scaling relations and TDE light curve modelling find a black hole mass of $\sim$10$^6$ $M_\odot$, which is on the lower end of supermassive black hole masses. ASASSN-23bd is a dim X-ray source, with an upper limit of $L_{0.3-10\,\mathrm{keV}} < 1.0\times10^{40}$ erg s$^{-1}$ from stacking all \emph{Swift} observations prior to MJD 60061, but with soft ($\sim 0.1$ keV) thermal emission with a luminosity of $L_{0.3-2 \,\mathrm{keV}}\sim4\times10^{39}$ erg s$^{-1}$ in \emph{XMM-Newton} observations on MJD 60095. The rapid $(t < 15$ days) light curve rise, low UV/optical luminosity, and a luminosity decline over 40 days of $\Delta L_{40}\approx-0.7$ make ASASSN-23bd one of the dimmest TDEs to date and a member of the growing ``Low Luminosity and Fast'' class of TDEs.Comment: 17 pages, 13 figures, submitted to MNRA

ENIGMA and global neuroscience: A decade of large-scale studies of the brain in health and disease across more than 40 countries

This review summarizes the last decade of work by the ENIGMA (Enhancing NeuroImaging Genetics through Meta Analysis) Consortium, a global alliance of over 1400 scientists across 43 countries, studying the human brain in health and disease. Building on large-scale genetic studies that discovered the first robustly replicated genetic loci associated with brain metrics, ENIGMA has diversified into over 50 working groups (WGs), pooling worldwide data and expertise to answer fundamental questions in neuroscience, psychiatry, neurology, and genetics. Most ENIGMA WGs focus on specific psychiatric and neurological conditions, other WGs study normal variation due to sex and gender differences, or development and aging; still other WGs develop methodological pipelines and tools to facilitate harmonized analyses of "big data" (i.e., genetic and epigenetic data, multimodal MRI, and electroencephalography data). These international efforts have yielded the largest neuroimaging studies to date in schizophrenia, bipolar disorder, major depressive disorder, post-traumatic stress disorder, substance use disorders, obsessive-compulsive disorder, attention-deficit/hyperactivity disorder, autism spectrum disorders, epilepsy, and 22q11.2 deletion syndrome. More recent ENIGMA WGs have formed to study anxiety disorders, suicidal thoughts and behavior, sleep and insomnia, eating disorders, irritability, brain injury, antisocial personality and conduct disorder, and dissociative identity disorder. Here, we summarize the first decade of ENIGMA's activities and ongoing projects, and describe the successes and challenges encountered along the way. We highlight the advantages of collaborative large-scale coordinated data analyses for testing reproducibility and robustness of findings, offering the opportunity to identify brain systems involved in clinical syndromes across diverse samples and associated genetic, environmental, demographic, cognitive, and psychosocial factors

Preoperative Indicators of the Effectiveness of Surgical Release in Patients with de Quervain Disease:A Prospective Cohort Study

Background: A significant proportion of patients report persistent pain after surgical release for de Quervain disease (DQ). This study aimed to investigate the effectiveness of a surgical release for DQ and to identify the preoperative factors associated with pain after a surgical release for DQ. Methods: This prospective cohort study included 707 patients who underwent surgical release and completed a visual analogue scale questionnaire (VAS; range 0 to 100). We used a paired t test to analyze the effectiveness of the surgical release on pain at 3 months postoperatively compared with the preoperative measure. A hierarchical multivariable linear regression model was created to investigate the contribution of patient-related and disease-related characteristics to postoperative pain. Results: All VAS domains showed improvement after surgical release. On average, the mean VAS pain decreased by 44 points (95% CI, 42, 46). Smoking (B = 6.37; P &lt; 0.01), younger age (B = -0.35; P &lt; 0.01), longer duration of complaints (B = 0.13; P &lt; 0.01), concomitant surgery (B = 14.40; P &lt; 0.01), and higher VAS pain scores at intake (B = 0.15; P &lt; 0.01) were associated with worse VAS pain scores postoperatively. Together, the variables explained 11% of the variance in mean VAS pain score at 3 months follow-up. Conclusions: This study confirms that surgical treatment for DQ significantly reduces patient-reported pain. Smoking, younger age, concomitant surgery, duration of complaints, and higher VAS pain scores at intake are associated with worse patient-reported pain 3 months after surgical release. However, the small effects suggest that these factors should not be considered the only important factors. CLINICAL QUESTION/LEVEL OF EVIDENCE: Risk, III.</p

Patient-Reported Outcomes and Function after Surgical Repair of the Ulnar Collateral Ligament of the Thumb

Purpose: The purpose of this study was to report prospectively collected patient-reported outcomes of patients who underwent open thumb ulnar collateral ligament (UCL) repair and to find risk factors associated with poor patient-reported outcomes. Methods: Patients undergoing open surgical repair for a complete thumb UCL rupture were included between December 2011 and February 2021. Michigan Hand Outcomes Questionnaire (MHQ) total scores at baseline were compared to MHQ total scores at three and 12 months after surgery. Associations between the 12-month MHQ total score and several variables (i.e., sex, injury to surgery time, K-wire immobilization) were analyzed. Results: Seventy-six patients were included. From baseline to three and 12 months after surgery, patients improved significantly with a mean MHQ total score of 65 (standard deviation [SD] 15) to 78 (SD 14) and 87 (SD 12), respectively. We did not find any differences in outcomes between patients who underwent surgery in the acute (&lt;3 weeks) setting compared to a delayed setting (&lt;6 months). Conclusions: We found that patient-reported outcomes improve significantly at three and 12 months after open surgical repair of the thumb UCL compared to baseline. We did not find an association between injury to surgery time and lower MHQ total scores. This suggests that acute repair for full-thickness UCL tears might not always be necessary. Type of study/level of evidence: Therapeutic II.</p

Mega-analysis methods in ENIGMA: the experience of the generalized anxiety disorder working group

The ENIGMA group on Generalized Anxiety Disorder (ENIGMA‐Anxiety/GAD) is part of a broader effort to investigate anxiety disorders using imaging and genetic data across multiple sites worldwide. The group is actively conducting a mega‐analysis of a large number of brain structural scans. In this process, the group was confronted with many methodological challenges related to study planning and implementation, between‐country transfer of subject‐level data, quality control of a considerable amount of imaging data, and choices related to statistical methods and efficient use of resources. This report summarizes the background information and rationale for the various methodological decisions, as well as the approach taken to implement them. The goal is to document the approach and help guide other research groups working with large brain imaging data sets as they develop their own analytic pipelines for mega‐analyses