Restoration of tropical seagrass beds using wild bird fertilization and sediment regrading

Shallow water seagrass meadows are frequently damaged by recreational and commercial vessels. Severe injury occurs where propeller scarring, hull groundings and mooring anchors uproot entire plants, excavate sediments, and modify the biophysical properties of the substrate. In climax tropical seagrass communities dominated by Thalassia testudinum (turtlegrass), natural recovery in these disturbances can take several years to decades, and in some environmental conditions may not occur at all. During the recovery period, important ecological services provided by seagrasses are absent or substantially diminished and injured meadows can degrade further in response to natural disturbances, e.g. strong currents and severe storms. To determine if we could accelerate rehabilitation and prevent further degradation of injured turtlegrass meadows, we evaluated a restoration method called “modified compressed succession” using the fast-growing, opportunistic species Halodule wrightii to temporarily substitute ecological services for the slower-growing, climax species T. testudinum. In three experiments we showed statistically significant increases in density and coverage rates of H. wrightii transplants fertilized by wild bird feces as compared to unfertilized treatments. In one experiment, we further demonstrated that regrading excavated injuries with sediment-filled biodegradable tubes in combination with wild bird fertilization and H. wrightii transplants also accelerated seagrass recovery. Specific recommendations are presented for the best practical application of this restoration method in the calcium carbonate-based sediments of south Florida and the wider Caribbean region

Exile Vol. XXXII No. 1

ARTWORK Red and White by Karen Koch (cover) Vicissitudes I by Claudia H. Donegan 1 Untitled (\u2784} by Kok Fooi Yong 11 Lines by Don Jacobs 15 Vicissitudes II by Claudia H. Donegan 19 Waltham, Boston, Winter of \u2784 by Kok Fooi Yong 25 Statue You by Claudia H. Donegan 29 Museum Sketch by Deanna Lynne Bridgeforth 41 FICTION Sheba by Theresa Copeland 4-9 Was There Really Someone in the Kitchen With Dinah? by Susan Hanlon 21-24 What Do You Say Liza Blue? by Joan R. DeWitt 32-40 POETRY Ode by Jeff Masten 3 Misdemeanor by Karen J. Hall 10 Aimee and Kate by Jennifer Miller 13 Bound by Betsy Oster 14 Drawing by Reid Benes 17 Great-Grandfather by Debra Benko 18 Grammy Hayes and the Infamous Beaver by Jennifer Miller 27 Seabed by Judson B. Curry 28 Gentleman\u27s Quarterly (anonymous) 31 CONTRIBUTOR NOTES 43 Editors share equally all editorial decisions -ii Special thanks to Susan Moran and Elizabeth Wright -i

The metabolic regimes of 356 rivers in the United States

A national-scale quantification of metabolic energy flow in streams and rivers can improve understanding of the temporal dynamics of in-stream activity, links between energy cycling and ecosystem services, and the effects of human activities on aquatic metabolism. The two dominant terms in aquatic metabolism, gross primary production (GPP) and aerobic respiration (ER), have recently become practical to estimate for many sites due to improved modeling approaches and the availability of requisite model inputs in public datasets. We assembled inputs from the U.S. Geological Survey and National Aeronautics and Space Administration for October 2007 to January 2017. We then ran models to estimate daily GPP, ER, and the gas exchange rate coefficient for 356 streams and rivers across the continental United States. We also gathered potential explanatory variables and spatial information for cross-referencing this dataset with other datasets of watershed characteristics. This dataset offers a first national assessment of many-day time series of metabolic rates for up to 9 years per site, with a total of 490,907 site-days of estimates.We thank Jill Baron and the USGS Powell Center for financial support for this collaborative effort (Powell Center Working Group title: "Continental-scale overview of stream primary productivity, its links to water quality, and consequences for aquatic carbon biogeochemistry"). Additional financial support came from the USGS NAWQA program and Office of Water Information. NSF grants DEB-1146283 and EF1442501 partially supported ROH. A post-doctoral grant from the Basque Government partially supported MA. NAG was supported by the U.S. Department of Energy's Office of Science, Biological and Environmental Research. Oak Ridge National Laboratory is managed by UT-Battelle, LLC, for the U.S. Department of Energy under contract DE-AC05-00OR22725. Leah Colasuonno provided expert logistical support of our working group meetings. The developers of USGS ScienceBase were very helpful both in hosting this dataset and in responding to our requests. Randy Hunt and Mike Fienen of the USGS Wisconsin Modeling Center graciously provided access to their HTCondor cluster. Mike Vlah provided detailed and insightful reviews of the data and metadata

Equal fitness paradigm explained by a trade-off between generation time and energy production rate

Most plant, animal and microbial species of widely varying body size and lifestyle are nearly equally fit as evidenced by their coexistence and persistence through millions of years. All organisms compete for a limited supply of organic chemical energy, derived mostly from photosynthesis, to invest in the two components of fitness: survival and production. All organisms are mortal because molecular and cellular damage accumulates over the lifetime; life persists only because parents produce offspring. We call this the equal fitness paradigm. The equal fitness paradigm occurs because: (1) there is a trade-off between generation time and productive power, which have equal-but-opposite scalings with body size and temperature; smaller and warmer organisms have shorter lifespans but produce biomass at higher rates than larger and colder organisms; (2) the energy content of biomass is essentially constant, ~22.4 kJ g−1 dry body weight; and (3) the fraction of biomass production incorporated into surviving offspring is also roughly constant, ~10–50%. As organisms transmit approximately the same quantity of energy per gram to offspring in the next generation, no species has an inherent lasting advantage in the struggle for existence. The equal fitness paradigm emphasizes the central importance of energy, biological scaling relations and power–time trade-offs in life history, ecology and evolution

Light and flow regimes regulate the metabolism of rivers

Mean annual temperature and mean annual precipitation drive much of the variation in productivity across Earth's terrestrial ecosystems but do not explain variation in gross primary productivity (GPP) or ecosystem respiration (ER) in flowing waters. We document substantial variation in the magnitude and seasonality of GPP and ER across 222 US rivers. In contrast to their terrestrial counterparts, most river ecosystems respire far more carbon than they fix and have less pronounced and consistent seasonality in their metabolic rates. We find that variation in annual solar energy inputs and stability of flows are the primary drivers of GPP and ER across rivers. A classification schema based on these drivers advances river science and informs management.We thank Ted Stets, Jordan Read, Tom Battin, Sophia Bonjour, Marina Palta, and members of the Duke River Center for their help in developing these ideas. This work was supported by grants from the NSF 1442439 (to E.S.B. and J.W.H.), 1834679 (to R.O.H.), 1442451 (to R.O.H.), 2019528 (to R.O.H. and J.R.B.), 1442140 (to M.C.), 1442451 (to A.M.H.), 1442467 (to E.H.S.), 1442522 (to N.B.G.), 1624807 (to N.B.G.), and US Geological Survey funding for the working group was supported by the John Wesley Power Center for Analysis and Synthesis. Phil Savoy contributed as a postdoc- toral associate at Duke University and as a postdoctoral associate (contractor) at the US Geological Survey

Two families of non-LTR retrotransposons, Syrinx and Daphne, from the Darwinulid ostracod, Darwinula stevensoni

Author Posting. © The Authors, 2005. This is the author's version of the work. It is posted here by permission of Elsevier B.V. for personal use, not for redistribution. The definitive version was published in Gene 371 (2006): 296-307, doi:10.1016/j.gene.2005.12.007.Two novel families of non-LTR retrotransposons, named Syrinx and Daphne, were cloned and characterized in a putative ancient asexual ostracod Darwinula stevensoni. Phylogenetic analysis reveals that Daphne is the founding member of a novel clade of non-LTR retroelements, which also contains newly described families from the sea urchin and the silkworm and forms a sister clade to L2-like elements. The Syrinx family of non-LTR retrotransposons exhibits evidence of relatively recent activity, manifested in high levels of sequence similarity between individual copies and a three- to ten-fold excess of synonymous substitutions, which is indicative of purifying selection. The Daphne family may have very few copies with intact open reading frames, and exhibits neutral within-family ratio of non-synonymous to synonymous substitutions. It can additionally be characterized by formation of inverted truncated head-to-head structures. All of these features make recent activity less likely than in the Syrinx family. Our results are discussed in light of the evolutionary consequences of long-term asexuality in general and in Darwinula stevensoni in particular.I.S. acknowledges funding from the EC (Marie-Curie grant BIO-4-CT-98-5086) and the Belgian OSTC (MO/36/005), and I.A. would like to thank the U.S. National Science Foundation

State Capacity and Long-Run Economic Performance

Almost final version of the paperWe present new evidence about the long-run relationship between state capacity { the scal and administrative power of states { and economic performance. Our database is novel and spans 11 European countries and 4 centuries from the Old Regime to World War I. We argue that national governments undertook two political transformations over this period: fi scal centralisation and limited government. We fund a signifi cant direct relationship between fiscal centralisation and economic growth. Furthermore, we fi nd that an increase in the state's capacity to extract greater tax revenues was one mechanism through which both political transformations improved economic performance. Our analysis shows systematic evidence that state capacity is an important determinant of long-run economic growth

Diagnosis and management of tropomyosin receptor kinase (TRK) fusion sarcomas : expert recommendations from the World Sarcoma Network

Sarcomas are a heterogeneous group of malignancies with mesenchymal lineage differentiation. The discovery of neurotrophic tyrosine receptor kinase (NTRK) gene fusions as tissue-agnostic oncogenic drivers has led to new personalized therapies for a subset of patients with sarcoma in the form of tropomyosin receptor kinase (TRK) inhibitors. NTRK gene rearrangements and fusion transcripts can be detected with different molecular pathology techniques, while TRK protein expression can be demonstrated with immunohistochemistry. The rarity and diagnostic complexity of NTRK gene fusions raise a number of questions and challenges for clinicians. To address these challenges, the World Sarcoma Network convened two meetings of expert adult oncologists and pathologists and subsequently developed this article to provide practical guidance on the management of patients with sarcoma harboring NTRK gene fusions. We propose a diagnostic strategy that considers disease stage and histologic and molecular subtypes to facilitate routine testing for TRK expression and subsequent testing for NTRK gene fusions.Peer reviewe