The CYP71AZ P450 Subfamily: A Driving Factor for the Diversification of Coumarin Biosynthesis in Apiaceous Plants

International audienceThe production of coumarins and furanocoumarins (FCs) in higher plants is widely considered a model illustration of the adaptation of plants to their environment. In this report, we show that the multiplication of cytochrome P450 variants within the CYP71AZ subfamily has contributed to the diversification of these molecules. Multiple copies of genes encoding this enzyme family are found in Apiaceae, and their phylogenetic analysis suggests that they have different functions within these plants. CYP71AZ1 from Ammi majus and CYP71AZ3, 4, and 6 from Pastinaca sativa were functionally characterized. While CYP71AZ3 merely hydroxylated esculetin, the other enzymes accepted both simple coumarins and FCs. Superimposing in silico models of these enzymes led to the identification of different conformations of three regions in the enzyme active site. These sequences were subsequently utilized to mutate CYP71AZ4 to resemble CYP71AZ3. The swapping of these regions lead to significantly modified substrate specificity. Simultaneous mutations of all three regions shifted the specificity of CYP71AZ4 to that of CYP71AZ3, exclusively accepting esculetin. This approach may explain the evolution of this cytochrome P450 family regarding the appearance of FCs in parsnip and possibly in the Apiaceae

Photography-based taxonomy is inadequate, unnecessary, and potentially harmful for biological sciences

The question whether taxonomic descriptions naming new animal species without type specimen(s) deposited in collections should be accepted for publication by scientific journals and allowed by the Code has already been discussed in Zootaxa (Dubois & Nemésio 2007; Donegan 2008, 2009; Nemésio 2009a–b; Dubois 2009; Gentile & Snell 2009; Minelli 2009; Cianferoni & Bartolozzi 2016; Amorim et al. 2016). This question was again raised in a letter supported by 35 signatories published in the journal Nature (Pape et al. 2016) on 15 September 2016. On 25 September 2016, the following rebuttal (strictly limited to 300 words as per the editorial rules of Nature) was submitted to Nature, which on 18 October 2016 refused to publish it. As we think this problem is a very important one for zoological taxonomy, this text is published here exactly as submitted to Nature, followed by the list of the 493 taxonomists and collection-based researchers who signed it in the short time span from 20 September to 6 October 2016

The LegoPress: A Rehabilitation, Performance Assessment and Training Device

In this paper we present the LegoPress, a simple and cost-effective robotic device intended to be used for leg-press movements in rehabilitation and training. Basic adjustments can be done on the sitting position so as to maximize comfort and adapt the posture of the user depending on the desired training. The LegoPress has two motorized axes independently acting on the two legs. By means of force sensors positioned at the pedal level, a precise monitoring is possible. The force sensor is as well used to improve the impedance control, which enables to reproduce various behaviors. The device is not only able to mobilize the user’s legs but also to interact with her/him

Scopoletin 8-hydroxylase: a novel enzyme involved in coumarin biosynthesis and iron-deficiency responses in Arabidopsis: A novel enzyme involved in coumarin biosynthesis and iron-deficiency responses in Arabidopsis

International audienceIron deficiency is a serious agricultural problem, particularly in alkaline soils. Secretion of coumarins by Arabidopsis thaliana roots is induced under iron deficiency. An essential enzyme for the biosynthesis of the major Arabidopsis coumarins, scopoletin and its derivatives, is Feruloyl-CoA 6′-Hydroxylase1 (F6′H1), which belongs to a large enzyme family of the 2-oxoglutarate and Fe2+-dependent dioxygenases. We have functionally characterized another enzyme of this family, which is a close homologue of F6′H1 and is encoded by a strongly iron-responsive gene, At3g12900. We purified At3g12900 protein heterologously expressed in Escherichia coli and demonstrated that it is involved in the conversion of scopoletin into fraxetin, via hydroxylation at the C8 position, and that it thus functions as a scopoletin 8-hydroxylase (S8H). Its function in plant cells was confirmed by the transient expression of S8H protein in Nicotiana benthamiana leaves, followed by metabolite profiling and biochemical and ionomic characterization of Arabidopsis s8h knockout lines grown under various iron regimes. Our results indicate that S8H is involved in coumarin biosynthesis, as part of mechanisms used by plants to assimilate iron

Convergent evolution of the UbiA prenyltransferase family underlies the independent acquisition of furanocoumarins in plants

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What's new Paleorhodania?

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Record of the Toarcian oceanic anoxic event in the Grands Causses Basin (southern France) and its implications for vertebrate preservation

International audiencePaleontological excavations realized by our group in Toarcian shales (Lower Jurassic) of the Grands Causses Basin in Roqueredonde (Hérault, France), yielded several specimens of marine vertebrates. The newly discovered specimens are partly or entirely preserved in anatomical connection and include a partial ichthyosaur skeleton with soft tissues, and a 4 m-long thalattosuchian longirostrine marine crocodile. A multi-proxy approach has been developed (XRD-bulk and clay mineralogy, Rock-Eval pyrolysis, phosphorus and mercury contents) in order to replace these findings in a well-defined temporal and paleoenvironmental context, and hence constrain the factors that led to their remarkable preservation. The fossiliferous succession exposes a 3 m-thick upper Pliensbachian interval of marl and nodular carbonate beds, overlain by a 3 m-thick interval of lower Toarcian laminated shales and limestone beds. Our high-resolution ammonite biostratigraphy, combined with inorganic and organic carbon isotope chemostratigraphy, shows that the fossiliferous Toarcian strata were deposited at a time of global warming and major carbon cycle perturbation known as the Toarcian Oceanic Anoxic Event (T-OAE). The studied succession shows several similarities with the classical coeval fossiliferous levels of the Posidonia Shale in SW Germany, including high organic matter and hydrocarbon contents as well as extremely reduced sedimentation rates. These results indicate that the unusual richness in well-preserved vertebrates of the studied site can be explained by a combination of warming induced, low salinity and stratified waters, prolonged seafloor anoxia and reduced dilution by low carbonate and terrigenous input due to rapid sea-level rise. Our results also reveal a significant peak in mercury at the base of the T-OAE interval, consistent with that recorded in several coeval sections (e.g. Portugal, Morocco, Argentina, Chile). This mercury anomaly, most likely resulting from intense volcanic activity Karoo-Ferrar large igneous province, suggests that widespread exceptional vertebrate preservation during the T-OAE was initiated by a suite of severe environmental perturbations ultimately triggered by intense volcanic emissions

Isolation of Artemisia capillaris membrane-bound di-prenyltransferase for phenylpropanoids and redesign of artepillin C in yeast

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