WHEN WILL TAXONOMIC SATURATION BE ACHIEVED? A CASE STUDY IN NUNDUVA AND KYRTUTHRIX (RIVULARIACEAE, CYANOBACTERIA)1

A number of heterocytous, mat-forming, tapering cyanobacteria in Rivulariaceae have recently been observed in both the Atlantic and Pacific coasts in the rocky intertidal and supratidal zones. These belong to the genera Nunduva, Kyrtuthrix, and Phyllonema and have been the subject of several recent studies. Herein, two new species of Nunduva (N. komarkovae and N. sanagustinensis) and two new species of Kyrtuthrix (K. munecosensis and K. totonaca) are characterized and described from the coasts of Mexico. Genetic separation based on the 16S-23S ITS region was pronounced (\u3e10% in all comparisons). Morphological differences between all existing species in these two genera were also observed, but the group is morphologically complex, and these taxa are considered pseudocryptic. Nunduva and Kyrtuthrix remain morphologically and phylogenetically separate even with the addition of new species. However, how long will this remain the case? Many new genera and species of cyanobacteria have recently been described. Will the taxonomy of cyanobacteria eventually become saturated? Will we start to see multiple populations for the same cryptic species, or will future taxonomists collapse multiple species into fewer species, or multiple genera into single genera. The description of even more Nunduva and Kyrtuthrix species causes us to pause and evaluate the future of cyanobacterial taxonomy. These same questions are faced by algal taxonomists studying other phyla, and the resolution may ultimately be similar

A method for using monthly average temperatures in phenology models for grapevine (Vitis vinifera L.)

In recent years, there have been increasing efforts to link phenology models with seasonal climate predictions in so-called Decision Support Systems (DSS) to tailor crop management strategies. However, temporal discrepancies between phenology models with temperature data gathered on a daily basis and seasonal forecasting systems providing predictability on monthly scales have limited their use. In this work, we present a novel methodology to use monthly average temperature data in phenology models. Briefly stated, we modelled the timing of the appearance of specific grapevine phenological phases using monthly average temperatures. To do so, we computed the cumulative thermal time (Sf) and the number of effective days per month (effd). The effd is the number of days in a month on which temperatures would be above the minimum value for development (Tb). The calculation of effd is obtained from a normal probability distribution function derived from historical weather records. We tested the methodology on four experimental plots located in different European countries with contrasting weather conditions and for four different grapevine cultivars. The root mean square deviation (RMSD) ranged from 4 to 7 days for all the phenological phases considered, at all the different sites, and for all the cultivars. Furthermore, the bias of observed vs predicted comparisons was not significantly different when using either monthly mean or daily temperature values to model phenology. This new methodology, therefore, provides an easy and robust way to incorporate monthly temperature data into grapevine phenology models.info:eu-repo/semantics/publishedVersio

Applicability of the national policy of environmental education in educational institutions

La educación ambiental es un proceso que incentiva el desarrollo de capacidades para compatibilizar las actividades del hombre sobre el medio ambiente, a razón de esto, Colombia adoptó la Política Nacional de Educación Ambiental que orienta a la implementación de Proyectos Ambientales Escolares-PRAE. Esta investigación buscó analizar la aplicabilidad de esta Política mediante un comparativo entre los lineamientos de la política de educación ambiental y el estado actual de las actividades de las instituciones educativas (IE) enmarcadas en la educación ambiental. Esto se realizó mediante la utilización de la herramienta “talleres aplicados” cuya finalidad fue la recolección primaria del grupo de estudio, entre los resultados encontrados se evidenció un desconocimiento en las instituciones educativas sobre los ejes temáticos y líneas de trabajos de los PRAE, dificultades en la divulgación del PRAE en toda la institución y poco apoyo administrativo para la implementación respectivamente. En general los resultados indican que las actividades relacionadas a la temática ambiental están rezagadas a las áreas de conocimiento de ciencias naturales y estos a su vez no son coherentes con los PRA

Protective Role of the Interleukin 33 rs3939286 Gene Polymorphism in the Development of Subclinical Atherosclerosis in Rheumatoid Arthritis Patients

OBJECTIVES: To determine whether the interleukin-33 (IL-33)-interleukin-1 receptor like 1 (IL-1RL1) signaling pathway is implicated in the risk of subclinical atherosclerosis in patients with rheumatoid arthritis (RA). METHODS: A total of 576 Spanish RA patients from Northern Spain were genotyped for 6 well-known IL33-IL1RL1 polymorphisms (IL33 rs3939286, IL33 rs7025417, IL33 rs7044343, IL1RL1 rs2058660, IL1RL1 rs2310173 and IL1RL1 rs13015714) by TaqMan genotyping assay. The presence of subclinical atherosclerosis was determined by the assessment of carotid intima-media thickness (cIMT) by carotid ultrasound (US). RESULTS: RA patients carrying the TT genotype of the IL33 rs3939286 polymorphism had lower cIMT values than those homozygous for the CC genotype (mean ± standard deviation (SD): 0.71 ± 0.14 mm versus 0.76 ± 0.16 mm, respectively) while patients carrying the CT genotype had intermediate cIMT values (mean ± SD: 0.73 ± 0.17 mm). Moreover, RA patients carrying the mutant allele T of the IL33 rs3939286 polymorphism exhibited significantly lower cIMT values than those carrying the wild allele C (mean ± SD: 0.72 ± 0.16 mm versus 0.75 ± 0.18 mm respectively; p = 0.04). The association of both genotype and allele frequencies of IL33 rs3939286 and cIMT levels remained statistically significant after adjustment for sex, age at the time of US study, follow-up and center (p = 0.006 and p = 0.0023, respectively), evidencing that the potential effect conferred by IL33 rs3939286 may be independent of confounder factors. No association with other IL33-IL1RL1 genetic variants was observed. CONCLUSIONS: In conclusion, our results may suggest a potential protective effect of the IL33 rs3939286 allele T in the risk of subclinical atherosclerosis in patients with RA

En la costa aún sin mar

Los trabajos que conforman este volumen son una muestra de la presencia y actualidad de la obra de César Vallejo. Su poesía aún da lugar a nuevas y diversas interpretaciones; también a ciertas reconsideraciones. Asimismo, la narrativa del escritor peruano, poco atendida, está presente y exige estudio además de revalorización. La persona y obra de César Vallejo, en fin, son actuales incluso como un fenómeno metapoético.César Vallejo es un escritor esencial en el ámbito de la literatura contemporánea. Su obra literaria, escrita a principios del siglo pasado, sigue vigente. En su poesía, en particular, captó la sensibilidad de toda una época. Asimismo, supo traducir lo que él llamaba “el ritmo interior y el espíritu que se desprende de la realidad actual”. En cuanto a su obra en prosa, los estudios recientes dan muestra de su importancia, valor social y artístico. A casi cien años de la publicación de libros como Trilce y Los heraldos negros, la obra de César Vallejo sigue siendo fuente de goce estético y, por su complejidad, de búsqueda de conocimiento profundo de la realidad social y humana

To the public space of quality: a look from Barranquilla

Barranquilla en la búsqueda de su Re-conceptualización como ciudad integral y en apuesta a el mejoramiento de su infraestructura urbana, ha propuesto impulsar el potencial que representan los escenarios públicos en la cotidianidad de la ciudadanía, elementos dinamizadores como los parques y plazas, son tomados como piezas fundamentales para el estudio, análisis y critica de su funcionalidad como ente estructurante del urbanismo en el presente artículo. Logrando de esta forma un comparativo entre la cantidad, calidad y eficiencia de los espacios públicos que posee la ciudad, teniendo en cuenta características de su estado, apreciación e importancia que representa para la población y el impacto de este elemento en el ámbito urbano. Obteniendo a raíz de esto, aspectos subjetivos y objetivos que permiten una valoración completa, un abordaje sistémico del concepto de espacio público. Las variantes que se encuentran al analizar el espacio público en la ciudad dependen de su ubicación o contexto, área, componentes y población o área de influencia que es beneficiada con este, esto pone en una disyuntiva de como realmente ser objetivos a la hora de comparar las muestras, en qué criterios se puede basar para lograr una concepción de un espacio público eficiente, pero que al mismo tiempo se rija por las necesidades y requerimientos de quienes lo habitan, el cual es concebido como todo aquel espacio o área exterior que es de interés público; de todos y para todos, donde puedes ser libre de hacer lo que desees pero respetando el derecho de los demás ciudadanos.Barranquilla in the search of its Re-conceptualization as integral city and in bet to the improvement of its urban infrastructure, has proposed to promote the potential that represent the public scenarios in the daily life of the citizens, dynamic elements such as parks and squares, are taken as fundamental pieces for the study, analysis and critique of its functionality as structuring entity of urbanism in this article. Achieving in this way a comparison between the quantity, quality and efficiency of the public spaces that the city possesses, taking into account characteristics of its state, appreciation and importance that it represents for the population and the impact of this element in the urban environment. Obtaining as a result of this, subjective and objective aspects that allow a complete evaluation, a systemic approach of the concept of public space. The variants found when analyzing the public space in the city depend on its location or context, area, components and population or area of influence that is benefited with it, this puts in a dilemma of how to really be objective when comparing the samples, on what criteria can be based to achieve a conception of an efficient public space, but at the same time governed by the needs and requirements of those who inhabit it, which is conceived as all that space or exterior area that is public interest; of all and for all, where you can be free to do what you want but respecting the rights of other citizens

Mitochondria function associated genes contribute to Parkinson's Disease risk and later age at onset

Mitochondrial dysfunction has been implicated in the etiology of monogenic Parkinson’s disease (PD). Yet the role that mitochondrial processes play in the most common form of the disease; sporadic PD, is yet to be fully established. Here, we comprehensively assessed the role of mitochondrial function-associated genes in sporadic PD by leveraging improvements in the scale and analysis of PD GWAS data with recent advances in our understanding of the genetics of mitochondrial disease. We calculated a mitochondrial-specific polygenic risk score (PRS) and showed that cumulative small effect variants within both our primary and secondary gene lists are significantly associated with increased PD risk. We further reported that the PRS of the secondary mitochondrial gene list was significantly associated with later age at onset. Finally, to identify possible functional genomic associations we implemented Mendelian randomization, which showed that 14 of these mitochondrial functionassociated genes showed functional consequence associated with PD risk. Further analysis suggested that the 14 identified genes are not only involved in mitophagy, but implicate new mitochondrial processes. Our data suggests that therapeutics targeting mitochondrial bioenergetics and proteostasis pathways distinct from mitophagy could be beneficial to treating the early stage of PD

Moving beyond neurons: the role of cell type-specific gene regulation in Parkinson's disease heritability

Parkinson’s disease (PD), with its characteristic loss of nigrostriatal dopaminergic neurons and deposition of α-synuclein in neurons, is often considered a neuronal disorder. However, in recent years substantial evidence has emerged to implicate glial cell types, such as astrocytes and microglia. In this study, we used stratified LD score regression and expression-weighted cell-type enrichment together with several brain-related and cell-type-specific genomic annotations to connect human genomic PD findings to specific brain cell types. We found that PD heritability attributable to common variation does not enrich in global and regional brain annotations or brain-related cell-type-specific annotations. Likewise, we found no enrichment of PD susceptibility genes in brain-related cell types. In contrast, we demonstrated a significant enrichment of PD heritability in a curated lysosomal gene set highly expressed in astrocytic, microglial, and oligodendrocyte subtypes, and in LoF-intolerant genes, which were found highly expressed in almost all tested cellular subtypes. Our results suggest that PD risk loci do not lie in specific cell types or individual brain regions, but rather in global cellular processes detectable across several cell types

Regulatory sites for splicing in human basal ganglia are enriched for disease-relevant information

Genome-wide association studies have generated an increasing number of common genetic variants associated with neurological and psychiatric disease risk. An improved understanding of the genetic control of gene expression in human brain is vital considering this is the likely modus operandum for many causal variants. However, human brain sampling complexities limit the explanatory power of brain-related expression quantitative trait loci (eQTL) and allele-specific expression (ASE) signals. We address this, using paired genomic and transcriptomic data from putamen and substantia nigra from 117 human brains, interrogating regulation at different RNA processing stages and uncovering novel transcripts. We identify disease-relevant regulatory loci, find that splicing eQTLs are enriched for regulatory information of neuron-specific genes, that ASEs provide cell-specific regulatory information with evidence for cellular specificity, and that incomplete annotation of the brain transcriptome limits interpretation of risk loci for neuropsychiatric disease. This resource of regulatory data is accessible through our web server, http://braineacv2.inf.um.es/

Identification of Candidate Parkinson Disease Genes by Integrating Genome-Wide Association Study, Expression, and Epigenetic Data Sets

Importance Substantial genome-wide association study (GWAS) work in Parkinson disease (PD) has led to the discovery of an increasing number of loci shown reliably to be associated with increased risk of disease. Improved understanding of the underlying genes and mechanisms at these loci will be key to understanding the pathogenesis of PD. / Objective To investigate what genes and genomic processes underlie the risk of sporadic PD. / Design and Setting This genetic association study used the bioinformatic tools Coloc and transcriptome-wide association study (TWAS) to integrate PD case-control GWAS data published in 2017 with expression data (from Braineac, the Genotype-Tissue Expression [GTEx], and CommonMind) and methylation data (derived from UK Parkinson brain samples) to uncover putative gene expression and splicing mechanisms associated with PD GWAS signals. Candidate genes were further characterized using cell-type specificity, weighted gene coexpression networks, and weighted protein-protein interaction networks. / Main Outcomes and Measures It was hypothesized a priori that some genes underlying PD loci would alter PD risk through changes to expression, splicing, or methylation. Candidate genes are presented whose change in expression, splicing, or methylation are associated with risk of PD as well as the functional pathways and cell types in which these genes have an important role. / Results Gene-level analysis of expression revealed 5 genes (WDR6 [OMIM 606031], CD38 [OMIM 107270], GPNMB [OMIM 604368], RAB29 [OMIM 603949], and TMEM163 [OMIM 618978]) that replicated using both Coloc and TWAS analyses in both the GTEx and Braineac expression data sets. A further 6 genes (ZRANB3 [OMIM 615655], PCGF3 [OMIM 617543], NEK1 [OMIM 604588], NUPL2 [NCBI 11097], GALC [OMIM 606890], and CTSB [OMIM 116810]) showed evidence of disease-associated splicing effects. Cell-type specificity analysis revealed that gene expression was overall more prevalent in glial cell types compared with neurons. The weighted gene coexpression performed on the GTEx data set showed that NUPL2 is a key gene in 3 modules implicated in catabolic processes associated with protein ubiquitination and in the ubiquitin-dependent protein catabolic process in the nucleus accumbens, caudate, and putamen. TMEM163 and ZRANB3 were both important in modules in the frontal cortex and caudate, respectively, indicating regulation of signaling and cell communication. Protein interactor analysis and simulations using random networks demonstrated that the candidate genes interact significantly more with known mendelian PD and parkinsonism proteins than would be expected by chance. / Conclusions and Relevance Together, these results suggest that several candidate genes and pathways are associated with the findings observed in PD GWAS studies