66 research outputs found
RASCAL: calculation of graph similarity using maximum common edge subgraphs
A new graph similarity calculation procedure is introduced for comparing labeled graphs. Given a minimum similarity threshold, the procedure consists of an initial screening process to determine whether it is possible for the measure of similarity between the two graphs to exceed the minimum threshold, followed by a rigorous maximum common edge subgraph (MCES) detection algorithm to compute the exact degree and composition of similarity. The proposed MCES algorithm is based on a maximum clique formulation of the problem and is a significant improvement over other published algorithms. It presents new approaches to both lower and upper bounding as well as vertex selection
Delineation of a scab resistance gene cluster on linkage group 2 of apple
With the advent of genetic maps for apple that carry common transferable markers, it is possible to investigate genomic relationships between genes present in different accessions. Co-dominant markers, such as microsatellites, are particularly useful for this purpose. In recent years, genetic markers have been developed for a number of resistance genes for apple scab (Venturia inaequalis). In this paper, we present the discovery of a new scab resistance gene (Vh8) that maps to linkage group 2 (LG2). We then bring together the findings from different research groups on other scab resistance genes that also map to LG2 in an attempt to delineate their arrangement. These other genes comprise major genes (Vh2, Vr, Vbj and Vr2), as well as several race specific quantitative trait loci (QTLs) from `DiscoveryÂż and `TN10-8Âż. Results indicate that Vh2 and Vr are probably identical, and that Vh2/Vr, Vh8, Vbj and at least one of the QTLs are closely linked to each other on the lower half of LG2. A putative map of this gene cluster is presented. The fourth major gene, Vr2, maps at a significant distance from this gene cluster at the top end of LG2. We discuss the consequences of resistance gene cluster arrangements on breeding strategies for durable resistance to apple scab and the use of marker-assisted selectio
Ecological Invasion, Roughened Fronts, and a Competitor's Extreme Advance: Integrating Stochastic Spatial-Growth Models
Both community ecology and conservation biology seek further understanding of
factors governing the advance of an invasive species. We model biological
invasion as an individual-based, stochastic process on a two-dimensional
landscape. An ecologically superior invader and a resident species compete for
space preemptively. Our general model includes the basic contact process and a
variant of the Eden model as special cases. We employ the concept of a
"roughened" front to quantify effects of discreteness and stochasticity on
invasion; we emphasize the probability distribution of the front-runner's
relative position. That is, we analyze the location of the most advanced
invader as the extreme deviation about the front's mean position. We find that
a class of models with different assumptions about neighborhood interactions
exhibit universal characteristics. That is, key features of the invasion
dynamics span a class of models, independently of locally detailed demographic
rules. Our results integrate theories of invasive spatial growth and generate
novel hypotheses linking habitat or landscape size (length of the invading
front) to invasion velocity, and to the relative position of the most advanced
invader.Comment: The original publication is available at
www.springerlink.com/content/8528v8563r7u2742
From the Big Bang Theory to the Theory of a Stationary Universe
We consider chaotic inflation in the theories with the effective potentials
phi^n and e^{\alpha\phi}. In such theories inflationary domains containing
sufficiently large and homogeneous scalar field \phi permanently produce new
inflationary domains of a similar type. We show that under certain conditions
this process of the self-reproduction of the Universe can be described by a
stationary distribution of probability, which means that the fraction of the
physical volume of the Universe in a state with given properties (with given
values of fields, with a given density of matter, etc.) does not depend on
time, both at the stage of inflation and after it. This represents a strong
deviation of inflationary cosmology from the standard Big Bang paradigm. We
compare our approach with other approaches to quantum cosmology, and illustrate
some of the general conclusions mentioned above with the results of a computer
simulation of stochastic processes in the inflationary Universe.Comment: No changes to the file, but original figures are included. They
substantially help to understand this paper, as well as eternal inflation in
general, and what is now called the "multiverse" and the "string theory
landscape." High quality figures can be found at
http://www.stanford.edu/~alinde/LLMbigfigs
Influencia del coeficiente estructural de una base reciclada con cemento sobre la deformaciĂłn permanente en la subrasante â una aproximaciĂłn con el mĂ©todo Sudrafricano
Trabajo de investigaciĂłnEn la investigaciĂłn se diseñaron pavimentos con una base reciclada con cemento, variando el mĂłdulo resiliente de la subrasante y el espesor de la sub-base granular, en cada caso. Para cada uno de los diseños se determinĂł la respuesta estructural (esfuerzo y deformaciĂłn en la subrasante) a travĂ©s de un software y con los resultados obtenidos se determinĂł la relaciĂłn entre la deformaciĂłn permanente en la subrasante y el nĂșmero de ejes equivalentes correspondientes.1. INTRODUCCIĂN
2. PLANTEAMIENTO DEL PROBLEMA
3. OBJETIVOS
4. MARCO TEĂRICO
5. ESTADO DEL ARTE
6. PREGUNTA DE INVESTIGACIĂN
7. ALCANCES Y LIMITACIONES
8. METODOLOGĂA
9. CĂLCULOS Y RESULTADOS
10. ANĂLISIS DE RESULTADOS
11. CONCLUSIONES Y RECOMENDACIONES
12. BIBLIOGRAFĂAPregradoIngeniero Civi
Use of SMS texts for facilitating access to online alcohol interventions: a feasibility study
A41 Use of SMS texts for facilitating access to online alcohol interventions: a feasibility study
In: Addiction Science & Clinical Practice 2017, 12(Suppl 1): A4
Fine-mapping of prostate cancer susceptibility loci in a large meta-analysis identifies candidate causal variants
Prostate cancer is a polygenic disease with a large heritable component. A number of common, low-penetrance prostate cancer risk loci have been identified through GWAS. Here we apply the Bayesian multivariate variable selection algorithm JAM to fine-map 84 prostate cancer susceptibility loci, using summary data from a large European ancestry meta-analysis. We observe evidence for multiple independent signals at 12 regions and 99 risk signals overall. Only 15 original GWAS tag SNPs remain among the catalogue of candidate variants identified; the remainder are replaced by more likely candidates. Biological annotation of our credible set of variants indicates significant enrichment within promoter and enhancer elements, and transcription factor-binding sites, including AR, ERG and FOXA1. In 40 regions at least one variant is colocalised with an eQTL in prostate cancer tissue. The refined set of candidate variants substantially increase the proportion of familial relative risk explained by these known susceptibility regions, which highlights the importance of fine-mapping studies and has implications for clinical risk profiling. © 2018 The Author(s).Prostate cancer is a polygenic disease with a large heritable component. A number of common, low-penetrance prostate cancer risk loci have been identified through GWAS. Here we apply the Bayesian multivariate variable selection algorithm JAM to fine-map 84 prostate cancer susceptibility loci, using summary data from a large European ancestry meta-analysis. We observe evidence for multiple independent signals at 12 regions and 99 risk signals overall. Only 15 original GWAS tag SNPs remain among the catalogue of candidate variants identified; the remainder are replaced by more likely candidates. Biological annotation of our credible set of variants indicates significant enrichment within promoter and enhancer elements, and transcription factor-binding sites, including AR, ERG and FOXA1. In 40 regions at least one variant is colocalised with an eQTL in prostate cancer tissue. The refined set of candidate variants substantially increase the proportion of familial relative risk explained by these known susceptibility regions, which highlights the importance of fine-mapping studies and has implications for clinical risk profiling. © 2018 The Author(s).Peer reviewe
State of the worldâs plants and fungi 2020
Kewâs State of the Worldâs Plants and Fungi project provides assessments of our current knowledge of the diversity of plants and fungi on Earth, the global threats that they face, and the policies to safeguard them. Produced in conjunction with an international scientific symposium, Kewâs State of the Worldâs Plants and Fungi sets an important international standard from which we can annually track trends in the global status of plant and fungal diversity
Influences de la sylviculture sur le risque de dégùts biotiques et abiotiques dans les peuplements forestiers
Selection of reagents for combinatorial synthesis using clique detection
The identification of a database subset in which all pairs of molecules have similarities less than some user-defined threshold is shown to be equivalent to the graph-theoretic problem of clique-detection. A comparison of several different clique-detection algorithms demonstrates that the algorithm due to Babel is by far the most efficient for this particular problem. The database subsets identified by the Babel algorithm are slightly more diverse than those identified by alternative, less time-consuming algorithms for dissimilarity-based compound selection
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