The people behind the samples : Biographical features of Past Hunter- Gatherers from KwaZulu-Natal who yielded aDNA

Abstract: Purpose: Skeletons sampled for ancient human DNA analysis are sometimes complete enough to provide information about the lives of the people they represent. We focus on three Later Stone Age skeletons, ca. 2000 B.P., from coastal KwaZulu-Natal, South Africa, whose ancient genomes have been sequenced (Schlebusch et al., 2017). Methods: Bioarchaeological approaches are integrated with aDNA information. Results: All skeletons are male. Dental development shows that the boy, with prominent cribra orbitalia, died at age 6–7 years. Two men show cranial and spinal trauma, extensive tooth wear, plus mild cribra orbitalia in one. Conclusions: Dental wear and trauma of the adults are consistent with hunter-gatherer lives. Even partial aDNA evidence contributes to sex determination. Parasitic infection such as schistosomiasis is the best-fit cause for the child’s anemia in this case. Contribution to knowledge: The convergence of genomic and bioarchaeological approaches expands our knowledge of the past lives of a boy and two men whose lives as hunter-gatherers included episodes of trauma and disease. Limitations: The skeletons are incomplete, in variable condition, and from poorly characterized local cultural contexts. Suggestions for further research: Thorough osteobiographic analysis should accompany paleogenomic investigations. Such disciplinary collaboration enriches our understanding of the human past

Stature estimation equations for South Asian skeletons based on DXA scans of contemporary adults.

OBJECTIVES: Stature estimation from the skeleton is a classic anthropological problem, and recent years have seen the proliferation of population-specific regression equations. Many rely on the anatomical reconstruction of stature from archaeological skeletons to derive regression equations based on long bone lengths, but this requires a collection with very good preservation. In some regions, for example, South Asia, typical environmental conditions preclude the sufficient preservation of skeletal remains. Large-scale epidemiological studies that include medical imaging of the skeleton by techniques such as dual-energy X-ray absorptiometry (DXA) offer new potential datasets for developing such equations. MATERIALS AND METHODS: We derived estimation equations based on known height and bone lengths measured from DXA scans from the Andhra Pradesh Children and Parents Study (Hyderabad, India). Given debates on the most appropriate regression model to use, multiple methods were compared, and the performance of the equations was tested on a published skeletal dataset of individuals with known stature. RESULTS: The equations have standard errors of estimates and prediction errors similar to those derived using anatomical reconstruction or from cadaveric datasets. As measured by the number of significant differences between true and estimated stature, and the prediction errors, the new equations perform as well as, and generally better than, published equations commonly used on South Asian skeletons or based on Indian cadaveric datasets. CONCLUSIONS: This study demonstrates the utility of DXA scans as a data source for developing stature estimation equations and offer a new set of equations for use with South Asian datasets

Surname-Inferred Andean Ancestry Is Associated with Child Stature and Limb Lengths at High Altitude in Peru, but not at Sea Level

Objectives: Native Andean ancestry gives partial protection from reduced birthweight at high altitude in the Andes compared with European ancestry. Whether Andean ancestry is also associated with body proportions and greater postnatal body size at altitude is unknown. Therefore, we tested whether a greater proportion of Andean ancestry is associated with stature and body proportions among Peruvian children at high and low altitude. Methods: Height, head circumference, head-trunk height, upper and lower limb lengths, and tibia, ulna, hand and foot lengths, were measured in 133 highland and 169 lowland children aged 6 months to 8.5 years. For highland and lowland groups separately, age-sex-adjusted anthropometry z scores were regressed on the number of indigenous parental surnames as a proxy for Andean ancestry, adjusting for potential confounders (maternal age and education, parity, altitude [highlands only]). Results: Among highland children, greater Andean ancestry was negatively associated with stature and tibia, ulna, and lower limb lengths, independent of negative associations with greater altitude for these measurements. Relationships were strongest for tibia length: each additional Andean surname or 1,000 m increase at altitude among highland children was associated with 0.18 and 0.65 z score decreases in tibia length, respectively. Anthropometry was not significantly associated with ancestry among lowland children. Conclusions: Greater Andean ancestry is associated with shorter stature and limb measurements at high but not low altitude. Gene-environment interactions between high altitude and Andean ancestry may exacerbate the trade-off between chest dimensions and stature that was proposed previously, though we could not test this directly

Using classification and regression tree modelling to investigate response shift patterns in dentine hypersensitivity

BACKGROUND: Dentine hypersensitivity (DH) affects people's quality of life (QoL). However changes in the internal meaning of QoL, known as Response shift (RS) may undermine longitudinal assessment of QoL. This study aimed to describe patterns of RS in people with DH using Classification and Regression Trees (CRT) and to explore the convergent validity of CRT with the then-test and ideals approaches. METHODS: Data from an 8-week clinical trial of mouthwashes for dentine hypersensitivity (n = 75) using the Dentine Hypersensitivity Experience Questionnaire (DHEQ) as the outcome measure, were analysed. CRT was used to examine 8-week changes in DHEQ total score as a dependent variable with clinical status for DH and each DHEQ subscale score (restrictions, coping, social, emotional and identity) as independent variables. Recalibration was inferred when the clinical change was not consistent with the DHEQ change score using a minimally important difference for DHEQ of 22 points. Reprioritization was inferred by changes in the relative importance of each subscale to the model over time. RESULTS: Overall, 50.7% of participants experienced a clinical improvement in their DH after treatment and 22.7% experienced an important improvement in their quality of life. Thirty-six per cent shifted their internal standards downward and 14.7% upwards, suggesting recalibration. Reprioritization occurred over time among the social and emotional impacts of DH. CONCLUSIONS: CRT was a useful method to reveal both, the types and nature of RS in people with a mild health condition and demonstrated convergent validity with design based approaches to detect RS

Hominid-pongid distinctiveness in the miocene-pliocene fossil record: The lothagam mandible

The Lothagam mandibular fragment, found in 1967 west of Lake Turkana, Kenya, has been dated to 5.5 million years ago. This date is significant because it may lie within the suggested time range during which the hominid and pongid clades diverged. Because of its fragmentary condition and great age, this specimen has run the gamut of taxonomic assignations, from ramapithecine to pongid to hominid. These three nomenclatural categories serve as the basis for three hypotheses tested in this study. First, morphological and metric comparisons between Lothagam and a sample of Euroafrican ramapithecines address the hypothesis of “Lothagam as predi-vergence hominoid.” Second, comparisons with a sample of Pan test the “Lothagam as postdivergence, African protopongid” hypothesis. Finally, samples of Australopithecus afarensis and A. africanus were utilized to evaluate the hypothesis of “Lothagam as postdivergence, early hominid.” Unlike previous studies attempting to ascertain the evolutionary affinities of this enigmatic fossil, this work benefits from the large sample of A. afarensis specimens now generally available for study. Metric and morphological comparisons demonstrate Lothagam's affinity to A. afarensis in sharing derived, hominid states in such features as the mental foramen vertical position, the ascending ramus origin, the breadth of the alveolar margin, the reduction of the hypoconulid, the dimensions of the M 1 and the dimensions of the mandibular corpus. It is suggested that the dental/gnathic features enumerated in this study can be employed to distinguish ancestral hominid from pongid in future Mio/Pliocene paleontological discoveries.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/37633/1/1330700406_ftp.pd