142 research outputs found
Multiple mitochondrial introgression events and heteroplasmy in trypanosoma cruzi revealed by Maxicircle MLST and next generation sequencing
Background
Mitochondrial DNA is a valuable taxonomic marker due to its relatively fast rate of evolution. In Trypanosoma cruzi, the causative agent of Chagas disease, the mitochondrial genome has a unique structural organization consisting of 20â50 maxicircles (âŒ20 kb) and thousands of minicircles (0.5â10 kb). T. cruzi is an early diverging protist displaying remarkable genetic heterogeneity and is recognized as a complex of six discrete typing units (DTUs). The majority of infected humans are asymptomatic for life while 30â35% develop potentially fatal cardiac and/or digestive syndromes. However, the relationship between specific clinical outcomes and T. cruzi genotype remains elusive. The availability of whole genome sequences has driven advances in high resolution genotyping techniques and re-invigorated interest in exploring the diversity present within the various DTUs.
Methodology/Principal Findings
To describe intra-DTU diversity, we developed a highly resolutive maxicircle multilocus sequence typing (mtMLST) scheme based on ten gene fragments. A panel of 32 TcI isolates was genotyped using the mtMLST scheme, GPI, mini-exon and 25 microsatellite loci. Comparison of nuclear and mitochondrial data revealed clearly incongruent phylogenetic histories among different geographical populations as well as major DTUs. In parallel, we exploited read depth data, generated by Illumina sequencing of the maxicircle genome from the TcI reference strain Sylvio X10/1, to provide the first evidence of mitochondrial heteroplasmy (heterogeneous mitochondrial genomes in an individual cell) in T. cruzi.
Conclusions/Significance
mtMLST provides a powerful approach to genotyping at the sub-DTU level. This strategy will facilitate attempts to resolve phenotypic variation in T. cruzi and to address epidemiologically important hypotheses in conjunction with intensive spatio-temporal sampling. The observations of both general and specific incidences of nuclear-mitochondrial phylogenetic incongruence indicate that genetic recombination is geographically widespread and continues to influence the natural population structure of TcI, a conclusion which challenges the traditional paradigm of clonality in T. cruzi
Influence of CaCl2.2H2O Content on the Productive Process of Composites from Cotton Gin Waste
AbstractPrevious studies have shown the feasibility of production of masonry blocks and panels from agglomeration of cotton gin waste and calcium binders. Cotton gin waste is a serious problem for ginning plants, because in Argentina approximately 300,000 t of lignocellulosic wastes are produced annually without any final disposal destination. The accumulation of these residues is associated with pests and fire hazards. Since these composites are produced with simple equipment and a minimum energy requirement, their cost depends mainly on the binder (Portland cement) used and the process efficiency, since with a high productivity model, labor and equipment depreciation costs are significantly reduced. This paper analyzes the influence of CaCl2.2H2O (added as an accelerator for cement paste strength) on the minimum molding time required for composites manufacturing. A central composite experimental design was developed in order to study the interrelated variables. The influence of CaCl2.2H2O content on physical-mechanical cement paste properties and their relationship with composites stability are also evaluated. The results of this work show that CaCl2.2H2O content has significant influence on the efficiency of composites manufacturing as it reduces the molding time required
Theoretical study of incoherent phi photoproduction on a deuteron target
We study the photoproduction of phi mesons in deuteron, paying attention to
the modification of the cross section from bound protons to the free ones with
the aim of comparing with recent results at LEPS. For this purpose we take into
account Fermi motion in single scattering and rescattering of the phi to
account for phi absorption on a second nucleon as well as the rescattering of
the proton. We find that the contribution of the double scattering is much
smaller than the typical cross section of gamma p to phi p in free space, which
implies a very small screening of the phi production in deuteron. The
contribution from the proton rescattering, on the other hand, is found to be
not negligible compared to the cross section of gamma p to phi p in free space,
and leads to a moderate reduction of the phi photoproduction cross section on a
deuteron at forward angles if LEPS set up is taken into account. The Fermi
motion allows contribution of the single scattering in regions forbidden by
phase space in the free case. In particular, we find that for momentum
transferred squared close to the maximum value, the Fermi motion changes
drastically the shape of d sigma / dt, to the point that the ratio of this
cross section to the free one becomes very sensitive to the precise value of t
chosen, or the size of the bin used in an experimental analysis. Hence, this
particular region of t does not seem the most indicated to find effects of a
possible phi absorption in the deuteron. This reaction is studied theoretically
as a function of t and the effect of the experimental angular cuts at LEPS is
also discussed, providing guidelines for future experimental analyses of the
reaction.Comment: 17 pages, 16 figure
Search for Higgs bosons decaying to tautau pairs in ppbar collisions at sqrt(s) = 1.96 TeV
We present a search for the production of neutral Higgs bosons decaying into
tautau pairs in ppbar collisions at a center-of-mass energy of 1.96 TeV. The
data, corresponding to an integrated luminosity of 5.4 fb-1, were collected by
the D0 experiment at the Fermilab Tevatron Collider. We set upper limits at the
95% C.L. on the product of production cross section and branching ratio for a
scalar resonance decaying into tautau pairs, and we then interpret these limits
as limits on the production of Higgs bosons in the minimal supersymmetric
standard model (MSSM) and as constraints in the MSSM parameter space.Comment: 7 pages, 5 figures, submitted to PL
Measurement of three-jet differential cross sections d sigma-3jet / d M-3jet in p anti-p collisions at sqrt(s)=1.96 TeV
We present the first measurement of the inclusive three-jet differential
cross section as a function of the invariant mass of the three jets with the
largest transverse momenta in an event in p anti-p collisions at sqrt(s) = 1.96
TeV. The measurement is made in different rapidity regions and for different
jet transverse momentum requirements and is based on a data set corresponding
to an integrated luminosity of 0.7 fb^{-1} collected with the D0 detector at
the Fermilab Tevatron Collider. The results are used to test the three-jet
matrix elements in perturbative QCD calculations at next-to-leading order in
the strong coupling constant. The data allow discrimination between
parametrizations of the parton distribution functions of the proton.Comment: 10 pages, 4 figures, 2 tables, submitted to Phys. Lett. B, corrected
chi2 values for NNPD
Search for pair production of the scalar top quark in muon+tau final states
We present a search for the pair production of scalar top quarks
(), the lightest supersymmetric partners of the top quarks, in
collisions at a center-of-mass energy of 1.96 TeV, using data
corresponding to an integrated luminosity of {7.3 } collected with the
\dzero experiment at the Fermilab Tevatron Collider. Each scalar top quark is
assumed to decay into a quark, a charged lepton, and a scalar neutrino
(). We investigate final states arising from and
. With no significant excess of events observed above the
background expected from the standard model, we set exclusion limits on this
production process in the (,) plane.Comment: Submitted to Phys. Lett.
Measurements of inclusive W+jets production rates as a function of jet transverse momentum in ppbar collisions at sqrt{s}=1.96 TeV
This Letter describes measurements of inclusive W (--> e nu) + n jet cross
sections (n = 1-4), presented as total inclusive cross sections and
differentially in the nth jet transverse momentum. The measurements are made
using data corresponding to an integrated luminosity of 4.2 fb-1 collected by
the D0 detector at the Fermilab Tevatron Collider, and achieve considerably
smaller uncertainties on W +jets production cross sections than previous
measurements. The measurements are compared to next-to-leading order
perturbative QCD (pQCD) calculations in the n =1-3 jet multiplicity bins and to
leading order pQCD calculations in the 4-jet bin. The measurements are
generally in agreement with pQCD predictions, although certain regions of phase
space are identified where the calculations could be improved
Measurement of spin correlation in ttbar production using dilepton final states
We measure the correlation between the spin of the top quark and the spin of
the anti-top quark in (ttbar -> W+ W- b bbar -> l+ nu b l- nubar bbar) final
states produced in ppbar collisions at a center of mass energy sqrt(s)=1.96
TeV, where l is an electron or muon. The data correspond to an integrated
luminosity of 5.4 fb-1 and were collected with the D0 detector at the Fermilab
Tevatron collider. The correlation is extracted from the angles of the two
leptons in the t and tbar rest frames, yielding a correlation strength C=
0.10^{+0.45}_{-0.45}, in agreement with the NLO QCD prediction within two
standard deviations, but also in agreement with the no correlation hypothesis.Comment: 10 pages, 3 figures, submitted to PL
Search for single top quarks in the tau+jets channel using 4.8 fb of collision data
We present the first direct search for single top quark production using tau
leptons. The search is based on 4.8 fb of integrated luminosity
collected in collisions at =1.96 TeV with the D0 detector
at the Fermilab Tevatron Collider. We select events with a final state
including an isolated tau lepton, missing transverse energy, two or three jets,
one or two of them tagged. We use a multivariate technique to discriminate
signal from background. The number of events observed in data in this final
state is consistent with the signal plus background expectation. We set in the
tau+jets channel an upper limit on the single top quark cross section of
\TauLimObs pb at the 95% C.L. This measurement allows a gain of 4% in expected
sensitivity for the observation of single top production when combining it with
electron+jets and muon+jets channels already published by the D0 collaboration
with 2.3 fb of data. We measure a combined cross section of
\SuperCombineXSall pb, which is the most precise measurement to date.Comment: 12 pages, 5 figure
Measurement of the ttbar production cross section using dilepton events in ppbar collisions
We present a measurement of the ttbar production cross section sigma(ttbar)
in ppbar collisions at sqrt{s} = 1.96 TeV using 5.4 fb-1 of integrated
luminosity collected with the D0 detector. We consider final states with at
least two jets and two leptons (ee, emu, mumu), and events with one jet for the
the emu final state as well. The measured cross section is sigma(ttbar)= 7.36
+0.90-0.79 (stat + syst) pb. This result combined with the cross section
measurement in the lepton + jets final state yields sigma(ttbar)=7.56
+0.63-0.56 (stat + syst) pb, which agrees with the standard model expectation.
The relative precision of 8% of this measurement is comparable to the latest
theoretical calculations.Comment: 9 pages, published in Phys. Lett.
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