New fast arctangent approximation algorithm for generic real-time embedded applications

Fast and accurate arctangent approximations are used in several contemporary applications, including embedded systems, signal processing, radar, and power systems. Three main approximation techniques are well-established in the literature, varying in their accuracy and resource utilization levels. Those are the iterative coordinate rotational digital computer (CORDIC), the lookup tables (LUTs)-based, and the rational formulae techniques. This paper presents a novel technique that combines the advantages of both rational formulae and LUT approximation methods. The new algorithm exploits the pseudo-linear region around the tangent function zero point to estimate a reduced input arctangent through a modified rational approximation before referring this estimate to its original value using miniature LUTs. A new 2nd order rational approximation formula is introduced for the first time in this work and benchmarked against existing alternatives as it improves the new algorithm performance. The eZDSP-F28335 platform has been used for practical implementation and results validation of the proposed technique. The contributions of this work are summarized as follows: (1) introducing a new approximation algorithm with high precision and application-based flexibility; (2) introducing a new rational approximation formula that outperforms literature alternatives with the algorithm at higher accuracy requirement; and (3) presenting a practical evaluation index for rational approximations in the literature. - 2019 by the authors. Licensee MDPI, Basel, Switzerland.Funding: The publication of this article was funded by the Qatar National Library.Scopu

Insights into the Middle Eastern paternal genetic pool in Tunisia: high prevalence of T-M70 haplogroup in an Arab population

To obtain refreshed insights into the paternal lineages of Tunisian populations, Y-chromosome diversity was assessed in two populations belonging to an Arab genealogical lineage, Kairouan and Wesletia, as well as in four Tunisian Andalusian populations, Testour, Slouguia, Qalaat-El-Andalous and El Alia. The Arabs from Kairouan revealed 73.47% of E-M81 and close affinities with Berber groups, indicating they are likely arabized Berbers, clearly differentiated from the Arabs from Wesletia, who harbored the highest frequency (71.8%) of the Middle Eastern component ever observed in North Africa. In the Tunisian Andalusians, the North African component largely prevailed, followed by the Middle Eastern contribution. Global comparative analysis highlighted the heterogeneity of Tunisian populations, among which, as a whole, dominated a set of lineages ascribed to be of autochthonous Berber origin (71.67%), beside a component of essentially Middle Eastern extraction (18.35%), and signatures of Sub-Saharan (5.2%), European (3.45%) and Asiatic (1.33%) contributions. The remarkable frequency of T-M70 in Wesletia (17.4%) prompted to refine its phylogeographic analysis, allowing to confirm its Middle Eastern origin, though signs of local evolution in Northern Africa were also detected. Evidence was clear on the ancient introduction of T lineages into the region, probably since Neolithic times associated to spread of agriculture.This work was partially financed by FEDER-Fundo Europeu de Desenvolvimento Regional funds through the COMPETE 2020-Operacional Programme for Competitiveness and Internationalisation (POCI), Portugal 2020, and by Portuguese funds through FCT-Fundação para a Ciência e a Tecnologia/Ministério da Ciência, Tecnologia e Inovação in the framework of the projects “Institute for Research and Innovation in Health Sciences (i3S)” (POCI-01-0145-FEDER007274). IPATIMUP integrates the i3S research unit. VG is supported by FCT under the program contract provided in Decree-Law no.57/2016 of August 29

Ethanolic Extract of Algerian Propolis Induced Cell Damage in Staphylococcus aureus: A Promising Alternative as a Natural Bio-Preservative in Food Products

This study describes the antistaphylococcal mechanism of the ethanolic extract of Algerian propolis on Staphylococcus aureus ATCC 25923. To investigate the underlying mechanism of action of the ethanolic extract of propolis, bacteriolysis, bacterial death, leakage of potassium, proteins, nucleic components, and scanning electron microscopic studies were conducted. The results showed that the minimum inhibitory concentration (MIC) of ethanolic extract of propolis against Staphylococcus aureus ATCC 25923 was 39 μg ml–1. The extract displayed significant bactericid activity against S. aureus in a time and concentration dependant manner. Its mode of action was evident from the increase of K+ efflux and nucleotide leakage. These results were confirmed by Scanning Electron Microscopy (SEM) that showed remarkable morphological and ultrastructural changes in S. aureus after exposure to 1MIC and 2MIC concentrations. The overall study contributed to the understanding of the antistaphylococcal mechanism of ethanolic extract of propolis. It emphasizes its potential to be used as an important natural bio-preservatives in food products

The effect of tobacco, XPC, ERCC2 and ERCC5 genetic variants in bladder cancer development

<p>Abstract</p> <p>Background</p> <p>In this work, we have conducted a case-control study in order to assess the effect of tobacco and three genetic polymorphisms in <it>XPC, ERCC2 and ERCC5 </it>genes (rs2228001, rs13181 and rs17655) in bladder cancer development in Tunisia. We have also tried to evaluate whether these variants affect the bladder tumor stage and grade.</p> <p>Methods</p> <p>The patients group was constituted of 193 newly diagnosed cases of bladder tumors. The controls group was constituted of non-related healthy subjects. The rs2228001, rs13181 and rs17655 polymorphisms were genotyped using a polymerase chain reaction-restriction fragment length polymorphism technique.</p> <p>Results</p> <p>Our data have reported that non smoker and light smoker patients (1-19PY) are protected against bladder cancer development. Moreover, light smokers have less risk for developing advanced tumors stage. When we investigated the effect of genetic polymorphisms in bladder cancer development we have found that ERCC2 and ERCC5 variants were not implicated in the bladder cancer occurrence. However, the mutated homozygous genotype for XPC gene was associated with 2.09-fold increased risk of developing bladder cancer compared to the control carrying the wild genotype (p = 0.03, OR = 2.09, CI 95% 1.09-3.99). Finally, we have found that the XPC, ERCC2 and ERCC5 variants don't affect the tumors stage and grade.</p> <p>Conclusion</p> <p>These results suggest that the mutated homozygous genotype for XPC gene was associated with increased risk of developing bladder. However we have found no association between rs2228001, rs13181 and rs17655 polymorphisms and tumors stage and grade.</p

Circulating microRNAs in sera correlate with soluble biomarkers of immune activation but do not predict mortality in ART treated individuals with HIV-1 infection: A case control study

Introduction: The use of anti-retroviral therapy (ART) has dramatically reduced HIV-1 associated morbidity and mortality. However, HIV-1 infected individuals have increased rates of morbidity and mortality compared to the non-HIV-1 infected population and this appears to be related to end-organ diseases collectively referred to as Serious Non-AIDS Events (SNAEs). Circulating miRNAs are reported as promising biomarkers for a number of human disease conditions including those that constitute SNAEs. Our study sought to investigate the potential of selected miRNAs in predicting mortality in HIV-1 infected ART treated individuals. Materials and Methods: A set of miRNAs was chosen based on published associations with human disease conditions that constitute SNAEs. This case: control study compared 126 cases (individuals who died whilst on therapy), and 247 matched controls (individuals who remained alive). Cases and controls were ART treated participants of two pivotal HIV-1 trials. The relative abundance of each miRNA in serum was measured, by RTqPCR. Associations with mortality (all-cause, cardiovascular and malignancy) were assessed by logistic regression analysis. Correlations between miRNAs and CD4+ T cell count, hs-CRP, IL-6 and D-dimer were also assessed. Results: None of the selected miRNAs was associated with all-cause, cardiovascular or malignancy mortality. The levels of three miRNAs (miRs -21, -122 and -200a) correlated with IL-6 while miR-21 also correlated with D-dimer. Additionally, the abundance of miRs -31, -150 and -223, correlated with baseline CD4+ T cell count while the same three miRNAs plus miR- 145 correlated with nadir CD4+ T cell count. Discussion: No associations with mortality were found with any circulating miRNA studied. These results cast doubt onto the effectiveness of circulating miRNA as early predictors of mortality or the major underlying diseases that contribute to mortality in participants treated for HIV-1 infection

Development and Validation of a Risk Score for Chronic Kidney Disease in HIV Infection Using Prospective Cohort Data from the D:A:D Study

Ristola M. on työryhmien DAD Study Grp ; Royal Free Hosp Clin Cohort ; INSIGHT Study Grp ; SMART Study Grp ; ESPRIT Study Grp jäsen.Background Chronic kidney disease (CKD) is a major health issue for HIV-positive individuals, associated with increased morbidity and mortality. Development and implementation of a risk score model for CKD would allow comparison of the risks and benefits of adding potentially nephrotoxic antiretrovirals to a treatment regimen and would identify those at greatest risk of CKD. The aims of this study were to develop a simple, externally validated, and widely applicable long-term risk score model for CKD in HIV-positive individuals that can guide decision making in clinical practice. Methods and Findings A total of 17,954 HIV-positive individuals from the Data Collection on Adverse Events of Anti-HIV Drugs (D:A:D) study with >= 3 estimated glomerular filtration rate (eGFR) values after 1 January 2004 were included. Baseline was defined as the first eGFR > 60 ml/min/1.73 m2 after 1 January 2004; individuals with exposure to tenofovir, atazanavir, atazanavir/ritonavir, lopinavir/ritonavir, other boosted protease inhibitors before baseline were excluded. CKD was defined as confirmed (>3 mo apart) eGFR In the D:A:D study, 641 individuals developed CKD during 103,185 person-years of follow-up (PYFU; incidence 6.2/1,000 PYFU, 95% CI 5.7-6.7; median follow-up 6.1 y, range 0.3-9.1 y). Older age, intravenous drug use, hepatitis C coinfection, lower baseline eGFR, female gender, lower CD4 count nadir, hypertension, diabetes, and cardiovascular disease (CVD) predicted CKD. The adjusted incidence rate ratios of these nine categorical variables were scaled and summed to create the risk score. The median risk score at baseline was -2 (interquartile range -4 to 2). There was a 1: 393 chance of developing CKD in the next 5 y in the low risk group (risk score = 5, 505 events), respectively. Number needed to harm (NNTH) at 5 y when starting unboosted atazanavir or lopinavir/ritonavir among those with a low risk score was 1,702 (95% CI 1,166-3,367); NNTH was 202 (95% CI 159-278) and 21 (95% CI 19-23), respectively, for those with a medium and high risk score. NNTH was 739 (95% CI 506-1462), 88 (95% CI 69-121), and 9 (95% CI 8-10) for those with a low, medium, and high risk score, respectively, starting tenofovir, atazanavir/ritonavir, or another boosted protease inhibitor. The Royal Free Hospital Clinic Cohort included 2,548 individuals, of whom 94 individuals developed CKD (3.7%) during 18,376 PYFU (median follow-up 7.4 y, range 0.3-12.7 y). Of 2,013 individuals included from the SMART/ESPRIT control arms, 32 individuals developed CKD (1.6%) during 8,452 PYFU (median follow-up 4.1 y, range 0.6-8.1 y). External validation showed that the risk score predicted well in these cohorts. Limitations of this study included limited data on race and no information on proteinuria. Conclusions Both traditional and HIV-related risk factors were predictive of CKD. These factors were used to develop a risk score for CKD in HIV infection, externally validated, that has direct clinical relevance for patients and clinicians to weigh the benefits of certain antiretrovirals against the risk of CKD and to identify those at greatest risk of CKD.Peer reviewe

A Resolver Angle Estimator Based on Its Excitation Signal

A resolver generates a pair of signals proportional to the sine and cosine of the angular position of its shaft. A new low-cost method for converting the amplitudes of these sine/cosine transducer signals into a measure of the input angle without using lookup tables is proposed. The new method takes advantage of the components used to operate the resolver, the excitation (carrier) signal in particular. This is a feedforward method based on comparing the amplitudes of the resolver signals to those of the excitation signal together with another shifted by π. A simple method is then used to estimate the shaft angle through this comparison technique. The poor precision of comparison of the signals around their highly nonlinear peak regions is avoided by using a simple technique that relies only on the alternating pseudolinear segments of the signals. This results in a better overall accuracy of the converter. Beside simplicity of implementation, the proposed scheme offers the advantage of robustness to amplitude fluctuation of the transducer excitation signal. © 2009 IEEE

Precise method for linearizing sine and cosine signals in resolvers and quadrature encoders applications

Resolvers and quadrature encoders provide electrical signal related to the sine and cosine of the mechanical shaft angle over the full 360 degree range. A converter is described for the linearization of these signals, enabling the angle to be determined using simple linear equations. The converter is based upon the difference between the absolute values of the transducer signals, together with a dedicated linearization technique. The converter provides a nearly perfect triangular signal from which the angle is determined unambiguously over the full range. The theoretical error of non-linearity may be cut down to 7×10-4 degree. The principle and theory of operation, and computer simulation are given. The converter, full details of which are given, has been implemented using analogue electronic circuitry. The practical performance of the converter has been evaluated using a PC-based test rig. The converter was successfully tested with a commercial resolver. The experimental results obtained are in excellent agreement with theory and simulation. © 2004 IEEE

The Effect of Solvents and Rare-Earth Element (Er, Yb) Doping on Suspension Stability of Sol–Gel Titania Nanoparticles

International audienc

The effect of rare earth element (Er, Yb) doping and heat treatment on suspension stability of Y2O3 nanoparticles elaborated by sol-gel method

International audienceSol-gel processing was used to fabricate undoped and rare-earth (Er, Yb) doped very fine Y2O3 nanoparticles under supercritical drying conditions of ethanol using an autoclave and annealed at 500°C and 800°C for 2 h. The Er and/or Yb concentration is fixed at 5 mol % for doped and co-doped nanoparticles. The as-synthesized Y2O3 nanopowder was characterized by the X-ray diffraction, scanning electron microscopy and thermogravimetric analysis (TGA) coupled with differential thermal calorimetry (DTA). The effects of solvent, heat treatment and the doping on the suspension stability of yttrium oxide (Y2O3) nanoparticles doped rare-earth elements (Er and Yb) were evaluated by UV-Visible spectroscopy, zeta potential measurement and particle size in suspension ,thus, Hamaker 2 software. During this work, the particle analysis showed that the resulting nanoparticles had a pure cubic structure and nano-sized crystallites of about 8-38 nm. The heat treatment of the nanopowders causes a rapid decantation of the suspensions and the Er doped nanoparticles suspension had a good stability