An Experimental Digital Library Platform - A Demonstrator Prototype for the DigLib Project at SICS

Within the framework of the Digital Library project at SICS, this thesis describes the implementation of a demonstrator prototype of a digital library (DigLib); an experimental platform integrating several functions in one common interface. It includes descriptions of the structure and formats of the digital library collection, the tailoring of the search engine Dienst, the construction of a keyword extraction tool, and the design and development of the interface. The platform was realised through sicsDAIS, an agent interaction and presentation system, and is to be used for testing and evaluating various tools for information seeking. The platform supports various user interaction strategies by providing: search in bibliographic records (Dienst); an index of keywords (the Keyword Extraction Function (KEF)); and browsing through the hierarchical structure of the collection. KEF was developed for this thesis work, and extracts and presents keywords from Swedish documents. Although based on a comparatively simple algorithm, KEF contributes by supplying a long-felt want in the area of Information Retrieval. Evaluations of the tasks and the interface still remain to be done, but the digital library is very much up and running. By implementing the platform through sicsDAIS, DigLib can deploy additional tools and search engines without interfering with already running modules. If wanted, agents providing other services than SICS can supply, can be plugged in

GET WELL: an automated surveillance system for gaining new epidemiological knowledge

<p>Abstract</p> <p>Background</p> <p>The assumption behind the presented work is that the information people search for on the internet reflects the disease status in society. By having access to this source of information, epidemiologists can get a valuable complement to the traditional surveillance and potentially get new and timely epidemiological insights. For this purpose, the Swedish Institute for Infectious Disease Control collaborates with a medical web site in Sweden.</p> <p>Methods</p> <p>We built an application consisting of two conceptual parts. One part allows for trends, based on user specified requests, to be extracted from anonymous web query data from a Swedish medical web site. The second conceptual part permits tailored analyses of particular diseases, where more complex statistical methods are applied to the data. To evaluate the epidemiological relevance of the output, we compared Google search data and search data from the medical web site.</p> <p>Results</p> <p>In the paper, we give concrete examples of the output from the web query-based system. We also present results from the comparison between data from the search engine Google and search data from the national medical web site.</p> <p>Conclusions</p> <p>The application is in regular use at the Swedish Institute for Infectious Disease Control. A system based on web queries is flexible in that it can be adapted to any disease; we get information on other individuals than those who seek medical care; and the data do not suffer from reporting delays. Although Google data are based on a substantially larger search volume, search patterns obtained from the medical web site may still convey more information from an epidemiological perspective. Furthermore we can see advantages with having full access to the raw data.</p

CASE: A Framework for Computer Supported Outbreak Detection

Background: In computer supported outbreak detection, a statistical method is applied to a collection of cases to detect any excess cases for a particular disease. Whether a detected aberration is a true outbreak is decided by a human expert. We present a technical framework designed and implemented at the Swedish Institute for Infectious Disease Control for computer supported outbreak detection, where a database of case reports for a large number of infectious diseases can be processed using one or more statistical methods selected by the user. Results: Based on case information, such as diagnosis and date, different statistical algorithms for detecting outbreaks can be applied, both on the disease level and the subtype level. The parameter settings for the algorithms can be configured independently for different diagnoses using the provided graphical interface. Input generators and output parsers are also provided for all supported algorithms. If an outbreak signal is detected, an email notification is sent to the persons listed as receivers for that particular disease. Conclusions: The framework is available as open source software, licensed under GNU General Public License Version 3. By making the code open source, we wish to encourage others to contribute to the future development of computer supported outbreak detection systems, and in particular to the development of the CASE framewor

Web Queries as a Source for Syndromic Surveillance

In the field of syndromic surveillance, various sources are exploited for outbreak detection, monitoring and prediction. This paper describes a study on queries submitted to a medical web site, with influenza as a case study. The hypothesis of the work was that queries on influenza and influenza-like illness would provide a basis for the estimation of the timing of the peak and the intensity of the yearly influenza outbreaks that would be as good as the existing laboratory and sentinel surveillance. We calculated the occurrence of various queries related to influenza from search logs submitted to a Swedish medical web site for two influenza seasons. These figures were subsequently used to generate two models, one to estimate the number of laboratory verified influenza cases and one to estimate the proportion of patients with influenza-like illness reported by selected General Practitioners in Sweden. We applied an approach designed for highly correlated data, partial least squares regression. In our work, we found that certain web queries on influenza follow the same pattern as that obtained by the two other surveillance systems for influenza epidemics, and that they have equal power for the estimation of the influenza burden in society. Web queries give a unique access to ill individuals who are not (yet) seeking care. This paper shows the potential of web queries as an accurate, cheap and labour extensive source for syndromic surveillance

Evaluation of Rich and Explicit Feedback for Exploratory Search

A user’s goals and interests during an exploratory search task are often ambiguous and complex. When engaging with new documents, people regularly use annotations to help better understand them and make them their own. These annotations can also pro- vide rich information to gain insight into a reader’s interests. In particular, it is possible to use highlights as a richer form of feed- back compared to traditional document-level relevance feedback. We first show that this form of feedback leads to improvements in document retrieval in exploratory search tasks with simulated users when compared to relevance feedback. We then present an evaluation platform which will allow us to understand the retrieval performance, user experience, and behavioral characteristics of human subjects using highlights as feedback. Finally, we propose an experimental design with human subjects. We hope that our experimental findings will help improve current simulated user evaluations for such systems

Improved automatic keyword extraction given more linguistic knowledge

In this paper, experiments on automatic extraction of keywords from abstracts using a supervised machine learning algorithm are discussed. The main point of this paper is that by adding linguistic knowledge to the representation (such as syntactic features), rather than relying only on statistics (such as term frequency and n-grams), a better result is obtained as measured by keywords previously assigned by professional indexers. In more detail, extracting NP-chunks gives a better precision than n-grams, and by adding the POS tag(s) assigned to the term as a feature, a dramatic improvement of the results is obtained, independent of the term selection approach applied

Contact zone identities : lemkovshchyna in the poetry of jerzy harasymowicz

EThOS - Electronic Theses Online ServiceGBUnited Kingdo

Nationell influensasammankomst 1-2 november 2007 - Sammanfattningar

Rapport från Smittskyddsinstitutet, Socialstyrelsen och KrisberedskapsmyndighetenQC 2011100