90 research outputs found
Recommended from our members
Eagle Syndrome: A Rare Case of Atraumatic, Painful Cervical Neck Swelling
Introduction: Painful neck swelling is a common emergency complaint but can present diagnostic challenges. Eagle syndrome is a rare clinical entity in which a pathologically elongated styloid process or ossified stylohyoid ligament produces a constellation of symptoms in the head and neck region.Case Report: We present the case of a 50-year-old male with a spontaneous, atraumatic fracture of an elongated styloid process associated with hematoma formation and radiological findings of airway impingement.Discussion: The classic triad for Eagle syndrome consists of unilateral cervicofacial pain, globus sensation, and dysphagia. Diagnosis of Eagle syndrome should be made based on a combination of physical examination and radiological findings. Treatment options vary based on severity of symptoms.Conclusion: Although more likely to be an indolent and progressive complaint, providers in the acute care setting should be familiar with Eagle syndrome due to the potential for a spontaneous fracture of an elongated styloid process to cause acute, painful neck swelling and life-threatening airway compromise
Combination of Variable Active Site Residues Interact to Modulate Response Regulator Reaction Kinetics
Signal transduction pathways are responsible for sensing and responding to stimuli. Two- component systems are a common type of signaling pathway found in microorganisms and
plants, and are composed of a sensor kinase (SK) and response regulator (RR) protein. Changes in the phosphorylation states of the SK and RR due to environmental stimuli provide a molecular switch to control signal output. RRs possess the catalytic activity for phosphotransfer, but it is not known how closely related RRs self-catalyze phosphorylation and dephosphorylation reactions with rate constants that span
up to six orders of magnitude. Variable residues in the RR active site, named according to their position relative to a conserved aspartic acid (D+2) and threonine residue (T+1 and T+2), individually influence autophosphorylation and autodephosphorylation reaction kinetics by one to two orders of magnitude. Our hypothesis is that certain combinations of variable active site residues interact to produce much larger effects on RR reaction kinetics than the sum of their individual effects. To investigate these interactive properties, we examined existing data on the effects of specific D+2 and T+2 combinations, in the presence of the most common T+1 residue (Ala), that resulted in
synergistic interactivity. To complete characterization of position T+1, the impact of Gly (the second most abundant residue) on reaction kinetics was tested. Finally, the effects of combinations at all three positions on rate constants were tested.
Results show similarity in rate constants between proteins bearing Ala or Gly at T+1, while D+2/T+1/T+2 combinations Asn/Thr/Ser and Arg/Gly/Tyr displayed no interactivity and Asn/Val/Ser was antagonistic. The T+1 results are consistent with the structural similarity of Ala and Gly. To further elucidate interactive properties, combination Arg/Gly/His is currently being investigated; however, a D+2/T+1/T+2 combination displaying synergism has yet to be observed.Bachelor of Scienc
NAISR: A 3D Neural Additive Model for Interpretable Shape Representation
Deep implicit functions (DIFs) have emerged as a powerful paradigm for many
computer vision tasks such as 3D shape reconstruction, generation,
registration, completion, editing, and understanding. However, given a set of
3D shapes with associated covariates there is at present no shape
representation method which allows to precisely represent the shapes while
capturing the individual dependencies on each covariate. Such a method would be
of high utility to researchers to discover knowledge hidden in a population of
shapes. We propose a 3D Neural Additive Model for Interpretable Shape
Representation (NAISR) which describes individual shapes by deforming a shape
atlas in accordance to the effect of disentangled covariates. Our approach
captures shape population trends and allows for patient-specific predictions
through shape transfer. NAISR is the first approach to combine the benefits of
deep implicit shape representations with an atlas deforming according to
specified covariates. Although our driving problem is the construction of an
airway atlas, NAISR is a general approach for modeling, representing, and
investigating shape populations. We evaluate NAISR with respect to shape
reconstruction, shape disentanglement, shape evolution, and shape transfer for
the pediatric upper airway. Our experiments demonstrate that NAISR achieves
competitive shape reconstruction performance while retaining interpretability.Comment: 20 page
Evaluation of ACCMIP Outgoing Longwave Radiation from Tropospheric Ozone Using TES Satellite Observations.
We use simultaneous observations of tropospheric ozone and outgoing longwave radiation (OLR) sensitivity to tropospheric ozone from the Tropospheric Emission Spectrometer (TES) to evaluate model tropospheric ozone and its effect on OLR simulated by a suite of chemistry-climate models that participated in the Atmospheric Chemistry and Climate Model Intercomparison Project (ACCMIP). The ensemble mean of ACCMIP models show a persistent but modest tropospheric ozone low bias (5-20 ppb) in the Southern Hemisphere (SH) and modest high bias (5-10 ppb) in the Northern Hemisphere (NH) relative to TES ozone for 2005-2010. These ozone biases have a significant impact on the OLR. Using TES instantaneous radiative kernels (IRK), we show that the ACCMIP ensemble mean tropospheric ozone low bias leads up to 120mW/ sq. m OLR high bias locally but zonally compensating errors reduce the global OLR high bias to 39+/- 41mW/ sq. m relative to TES data. We show that there is a correlation (Sq. R = 0.59) between the magnitude of the ACCMIP OLR bias and the deviation of the ACCMIP preindustrial to present day (1750-2010) ozone radiative forcing (RF) from the ensemble ozone RF mean. However, this correlation is driven primarily by models whose absolute OLR bias from tropospheric ozone exceeds 100mW/ sq. m. Removing these models leads to a mean ozone radiative forcing of 394+/- 42mW/ sq. m. The mean is about the same and the standard deviation is about 30% lower than an ensemble ozone RF of 384 +/- 60mW/ sq. m derived from 14 of the 16 ACCMIP models reported in a companion ACCMIP study. These results point towards a profitable direction of combining satellite observations and chemistry-climate model simulations to reduce uncertainty in ozone radiative forcing
Extramedullary Hematopoiesis in the Sinonasal Cavity: A Case Report and Review of the Literature
Approximately 1 in 600 African-Americans are homozygous for the sickle cell gene.1 This commonly inherited hematologic disorder causes sickling of red blood cells (RBCs), prompting rapid hemolysis. A common clinical manifestation of sickle cell disease (SCD) is chronic anemia. The body responds by increasing hematopoiesis. RBC production classically occurs in the bone marrow of the long bones, pelvis, spine, and sternum. With chronically elevated erythropoietin levels, organs such as the spleen and liver help augment the body’s RBC supply. These organs are areas of fetal erythropoiesis that do not typically contribute to physiologic RBC production in adults. Other, less commonly involved organs that have been documented as sites of extramedullary hematoposesis (EMH) include lymph nodes, paravertebral regions, intra-spinal canal, pre-sacral region, nasopharynx, and paranasal sinuses
Coronal Magnetic Field Evolution from 1996 to 2012: Continuous Non-potential Simulations
Coupled flux transport and magneto-frictional simulations are extended to simulate the continuous magnetic-field evolution in the global solar corona for over 15 years, from the start of Solar Cycle 23 in 1996. By simplifying the dynamics, our model follows the build-up and transport of electric currents and free magnetic energy in the corona, offering an insight into the magnetic structure and topology that extrapolation-based models cannot. To enable these extended simulations, we have implemented a more efficient numerical grid, and have carefully calibrated the surface flux-transport model to reproduce the observed large-scale photospheric radial magnetic field, using emerging active regions determined from observed line-of-sight magnetograms. This calibration is described in some detail. In agreement with previous authors, we find that the standard flux-transport model is insufficient to simultaneously reproduce the observed polar fields and butterfly diagram during Cycle 23, and that additional effects must be added. For the best-fit model, we use automated techniques to detect the latitude–time profile of flux ropes and their ejections over the full solar cycle. Overall, flux ropes are more prevalent outside of active latitudes but those at active latitudes are more frequently ejected. Future possibilities for space-weather prediction with this approach are briefly assessed
Brecciation at the grain scale within the lithologies of the Winchcombe Mighei‐like carbonaceous chondrite
The Mighei‐like carbonaceous (CM) chondrites have been altered to various extents by water–rock reactions on their parent asteroid(s). This aqueous processing has destroyed much of the primary mineralogy of these meteorites, and the degree of alteration is highly heterogeneous at both the macroscale and nanoscale. Many CM meteorites are also heavily brecciated juxtaposing clasts with different alteration histories. Here we present results from the fine‐grained team consortium study of the Winchcombe meteorite, a recent CM chondrite fall that is a breccia and contains eight discrete lithologies that span a range of petrologic subtypes (CM2.0–2.6) that are suspended in a cataclastic matrix. Coordinated multitechnique, multiscale analyses of this breccia reveal substantial heterogeneity in the extent of alteration, even in highly aqueously processed lithologies. Some lithologies exhibit the full range and can comprise nearly unaltered coarse‐grained primary components that are found directly alongside other coarse‐grained components that have experienced complete pseudomorphic replacement by secondary minerals. The preservation of the complete alteration sequence and pseudomorph textures showing tochilinite–cronstedtite intergrowths are replacing carbonates suggest that CMs may be initially more carbonate rich than previously thought. This heterogeneity in aqueous alteration extent is likely due to a combination of microscale variability in permeability and water/rock ratio generating local microenvironments as has been established previously. Nevertheless, some of the disequilibrium mineral assemblages observed, such as hydrous minerals juxtaposed with surviving phases that are typically more fluid susceptible, can only be reconciled by multiple generations of alteration, disruption, and reaccretion of the CM parent body at the grain scale
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing.
Microbial ecology is plagued by problems
of an abstract nature. Cell sizes are so
small and population sizes so large that
both are virtually incomprehensible. Niches
are so far from our everyday experience
as to make their very definition elusive.
Organisms that may be abundant and
critical to our survival are little understood,
seldom described and/or cultured,
and sometimes yet to be even seen. One
way to confront these problems is to use
data of an even more abstract nature:
molecular sequence data. Massive environmental
nucleic acid sequencing, such
as metagenomics or metatranscriptomics,
promises functional analysis of microbial
communities as a whole, without prior
knowledge of which organisms are in the
environment or exactly how they are
interacting. But sequence-based ecological
studies nearly always use a comparative
approach, and that requires relevant
reference sequences, which are an extremely
limited resource when it comes to
microbial eukaryotes.
In practice, this means sequence databases
need to be populated with enormous
quantities of data for which we have
some certainties about the source. Most
important is the taxonomic identity of
the organism from which a sequence is
derived and as much functional identification
of the encoded proteins as possible. In
an ideal world, such information would be
available as a large set of complete, well curated,
and annotated genomes for all the
major organisms from the environment
in question. Reality substantially diverges
from this ideal, but at least for bacterial
molecular ecology, there is a database
consisting of thousands of complete genomes
from a wide range of taxa,
supplemented by a phylogeny-driven approach
to diversifying genomics [2]. For
eukaryotes, the number of available genomes
is far, far fewer, and we have relied
much more heavily on random growth of
sequence databases, raising the
question as to whether this is fit for
purpose
Recommended from our members
Assessing the quality of models of the ambient solar wind
In this paper we present an assessment of the status of models of the global Solar Wind in the inner heliosphere. We limit our discussion to the class of models designed to provide solar wind forecasts, excluding those designed for the purpose of testing physical processes in idealized configurations. In addition, we limit our discussion to modeling of the ‘ambient’ wind in the absence of coronal mass ejections. In this assessment we cover use of the models both in forecast mode and as tools for scientific research. We present a brief history of the development of these models, discussing the range of physical approximations in use. We discuss the limitations of the data inputs available to these models and its impact on their quality. We also discuss current model development trends
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing
International audienceCurrent sampling of genomic sequence data from eukaryotes is relatively poor, biased, and inadequate to address important questions about their biology, evolution, and ecology; this Community Page describes a resource of 700 transcriptomes from marine microbial eukaryotes to help understand their role in the world's oceans
- …