Design and Test of an Event Detector and Locator for the ReflectoActive™ Seals System

The purpose of this thesis was to research, design, develop and test a novel instrument for detecting fiber optic loop continuity and spatially locating fiber optic breaches. The work is for an active seal system called ReflectoActive™ Seals whose purpose is to provide real time container tamper indication. A Field Programmable Gate Array was used to implement a loop continuity detector and a spatial breach locator based on a high acquisition speed single photon counting optical time domain reflectometer. Communication and other control features were added in order to create a usable instrument that met defined requirements. A host graphical user interface was developed to illustrate system use and performance. The resulting device meets performance specifications by exhibiting a dynamic range of 27dB and a spatial resolution of 1.5 ft. The communication scheme used expands installation options and allows the device to communicate to a central host via existing Local Area Networks and/or the Internet

Cloud angular momentum and effective viscosity in global SPH simulations with feedback

We examine simulations of isolated galaxies to analyse the effects of localized feedback on the formation and evolution of molecular clouds. Feedback contributes to turbulence and the destruction of clouds, leading to a population of clouds that is younger, less massive, and with more retrograde rotation. We investigate the evolution of clouds as they interact with each other and the diffuse interstellar medium, and determine that the role of cloud interactions differs strongly with the presence of feedback: in models without feedback, scattering events dramatically increase the retrograde fraction, but in models with feedback, mergers between clouds may slightly increase the prograde fraction. We also produce an estimate of the viscous time-scale due to cloud–cloud collisions, which increases with increasing strength of feedback (tν ∼ 20 Gyr versus tν ∼ 10 Gyr), but is still much smaller than previous estimates (tν ∼ 1000 Gyr); although collisions become more frequent with feedback, less energy is lost in each collision than in the models without feedback

MAGICC haloes: confronting simulations with observations of the circumgalactic medium at z=0

We explore the circumgalactic medium (CGM) of two simulated star-forming galaxies with luminosities L ~ 0.1 and 1 L* generated using the smooth particle hydrodynamic code GASOLINE. These simulations are part of the Making Galaxies In a Cosmological Context (MAGICC) program in which the stellar feedback is tuned to match the stellar mass-halo mass relationship. For comparison, each galaxy was also simulated using a 'lower feedback' (LF) model which has strength comparable to other implementations in the literature. The 'MAGICC feedback' (MF) model has a higher incidence of massive stars and an approximately two times higher energy input per supernova. Apart from the low-mass halo using LF, each galaxy exhibits a metal-enriched CGM that extends to approximately the virial radius. A significant fraction of this gas has been heated in supernova explosions in the disc and subsequently ejected into the CGM where it is predicted to give rise to substantial O VI absorption. The simulations do not yet address the question of what happens to the O VI when the galaxies stop forming stars. Our models also predict a reservoir of cool H I clouds that show strong Ly\alpha absorption to several hundred kpc. Comparing these models to recent surveys with the Hubble Space Telescope, we find that only the MF models have sufficient O VI and H I gas in the CGM to reproduce the observed distributions. In separate analyses, these same MF models also show better agreement with other galaxy observables (e.g. rotation curves, surface brightness profiles and H I gas distribution). We infer that the CGM is the dominant reservoir of baryons for galaxy haloes.Comment: 9 pages, 7 figures, submitted MNRAS, comments welcom

Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD

Implementing precision medicine for complex diseases such as chronic obstructive lung disease (COPD) will require extensive use of biomarkers and an in-depth understanding of how genetic, epigenetic, and environmental variations contribute to phenotypic diversity and disease progression. A meta-analysis from two large cohorts of current and former smokers with and without COPD [SPIROMICS (N = 750); COPDGene (N = 590)] was used to identify single nucleotide polymorphisms (SNPs) associated with measurement of 88 blood proteins (protein quantitative trait loci; pQTLs). PQTLs consistently replicated between the two cohorts. Features of pQTLs were compared to previously reported expression QTLs (eQTLs). Inference of causal relations of pQTL genotypes, biomarker measurements, and four clinical COPD phenotypes (airflow obstruction, emphysema, exacerbation history, and chronic bronchitis) were explored using conditional independence tests. We identified 527 highly significant (p 10% of measured variation in 13 protein biomarkers, with a single SNP (rs7041; p = 10−392) explaining 71%-75% of the measured variation in vitamin D binding protein (gene = GC). Some of these pQTLs [e.g., pQTLs for VDBP, sRAGE (gene = AGER), surfactant protein D (gene = SFTPD), and TNFRSF10C] have been previously associated with COPD phenotypes. Most pQTLs were local (cis), but distant (trans) pQTL SNPs in the ABO blood group locus were the top pQTL SNPs for five proteins. The inclusion of pQTL SNPs improved the clinical predictive value for the established association of sRAGE and emphysema, and the explanation of variance (R2) for emphysema improved from 0.3 to 0.4 when the pQTL SNP was included in the model along with clinical covariates. Causal modeling provided insight into specific pQTL-disease relationships for airflow obstruction and emphysema. In conclusion, given the frequency of highly significant local pQTLs, the large amount of variance potentially explained by pQTL, and the differences observed between pQTLs and eQTLs SNPs, we recommend that protein biomarker-disease association studies take into account the potential effect of common local SNPs and that pQTLs be integrated along with eQTLs to uncover disease mechanisms. Large-scale blood biomarker studies would also benefit from close attention to the ABO blood group

DESIGN AND TEST OF AN EVENT DETECTOR AND LOCATOR

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Numerical simulations of bubble-induced star formation in dwarf irregular galaxies with a novel stellar feedback scheme

To study the star formation and feedback mechanism, we simulate the evolution of an isolated dwarf irregular galaxy (dIrr) in a fixed dark matter halo, similar in size to Wolf-Lundmark-Melotte, using a new stellar feedback scheme. We use the new version of our original N-body/smoothed particle chemodynamics code, GCD+, which adopts improved hydrodynamics, metal diffusion between the gas particles and new modelling of star formation and stellar wind and supernovae feedback. Comparing the simulations with and without stellar feedback effects, we demonstrate that the collisions of bubbles produced by strong feedback can induce star formation in a more widely spread area. We also demonstrate that the metallicity in star-forming regions is kept low due to the mixing of the metal-rich bubbles and the metal-poor interstellar medium. Our simulations also suggest that the bubble-induced star formation leads to many counter-rotating stars. The bubble-induced star formation could be a dominant mechanism to maintain star formation in dIrrs, which is different from larger spiral galaxies where the non-axisymmetric structures, such as spiral arms, are a main driver of star formation