Substrate Specificity and Plasticity of FERM-Containing Protein Tyrosine Phosphatases

SummaryEpidermal growth factor receptor (EGFR) pathway substrate 15 (Eps15) is a newly identified substrate for protein tyrosine phosphatase N3 (PTPN3), which belongs to the FERM-containing PTP subfamily comprising five members including PTPN3, N4, N13, N14, and N21. We solved the crystal structures of the PTPN3-Eps15 phosphopeptide complex and found that His812 of PTPN3 and Pro850 of Eps15 are responsible for the specific interaction between them. We defined the critical role of the additional residue Tyr676 of PTPN3, which is replaced by Ile939 in PTPN14, in recognition of tyrosine phosphorylated Eps15. The WPD loop necessary for catalysis is present in all members but not PTPN21. We identified that Glu instead of Asp in the WPE loop contributes to the catalytic incapability of PTPN21 due to an extended distance beyond protonation targeting a phosphotyrosine substrate. Together with in vivo validations, our results provide novel insights into the substrate specificity and plasticity of FERM-containing PTPs

Numerical modeling of unsaturated layered soil for rainfall-induced shallow landslides

In this paper, a pioneer study on numerical modeling of rainfall-induced shallow landslides in unsaturated layered soil using the variably saturated flow equation is presented. To model the shallow landslides, the infinite slope stability analysis coupled with the hydrological model with the consideration of the fluctuation of time-dependent pore water pressure and Gardner equation for soil water characteristic curve was developed. A linearization process for the nonlinear Richards equation to deal with groundwater flow in unsaturated layered soil is derived using the Gardner model. To solve one-dimensional flow in the unsaturated zone of layered soil profiles, flux conservation and the continuity of pressure potential at the interface between two consecutive layers are considered in the numerical discretization of the finite difference method. The validity of the proposed model is established in three numerical problems by comparing the results with the analytical and other numerical solutions. Application examples have also been conducted. Obtained results demonstrate that the fluctuation of pore water pressure in unsaturated layered soil dominates slope stability of landslides and the lowest factor of safety may occur at the interface between two consecutive layers. The findings observed in this study are a fundamental contribution to environmental protection engineering for landslides in areas with higher occurrence and vulnerability to extreme precipitation

Magnetic activities and parameters of 43 flare stars in the GWAC archive

In the archive of the Ground Wide Angle Camera (GWAC), we found 43 white light flares from 43 stars, among which, three are sympathetic or homologous flares, and one of them also has a quasi-periodic pulsation with a period of $13.0\pm1.5$ minutes. Among these 43 flare stars, there are 19 new active stars and 41 stars that have available TESS and/or K2 light curves, from which we found 931 stellar flares. We also obtained rotational or orbital periods of 34 GWAC flare stars, of which 33 are less than 5.4 days, and ephemerides of three eclipsing binaries from these light curves. Combining with low resolution spectra from LAMOST and the Xinglong 2.16m telescope, we found that $L_{\rm H\alpha}/L_{\rm bol}$ are in the saturation region in the rotation-activity diagram. From the LAMOST medium-resolution spectrum, we found that Star \#3 (HAT 178-02667) has double H$\alpha$ emissions which imply it is a binary, and two components are both active stars. Thirteen stars have flare frequency distributions (FFDs) from TESS and/or K2 light curves. These FFDs show that the flares detected by GWAC can occur at a frequency of 0.5 to 9.5 yr$^{-1}$. The impact of flares on habitable planets was also studied based on these FFDs, and flares from some GWAC flare stars may produce enough energetic flares to destroy ozone layers, but none can trigger prebiotic chemistry on their habitable planets.Comment: 20 pages, 9 figures, 3 table

Molecular signature of clinical severity in recovering patients with severe acute respiratory syndrome coronavirus (SARS-CoV)

BACKGROUND: Severe acute respiratory syndrome (SARS), a recent epidemic human disease, is caused by a novel coronavirus (SARS-CoV). First reported in Asia, SARS quickly spread worldwide through international travelling. As of July 2003, the World Health Organization reported a total of 8,437 people afflicted with SARS with a 9.6% mortality rate. Although immunopathological damages may account for the severity of respiratory distress, little is known about how the genome-wide gene expression of the host changes under the attack of SARS-CoV. RESULTS: Based on changes in gene expression of peripheral blood, we identified 52 signature genes that accurately discriminated acute SARS patients from non-SARS controls. While a general suppression of gene expression predominated in SARS-infected blood, several genes including those involved in innate immunity, such as defensins and eosinophil-derived neurotoxin, were upregulated. Instead of employing clustering methods, we ranked the severity of recovering SARS patients by generalized associate plots (GAP) according to the expression profiles of 52 signature genes. Through this method, we discovered a smooth transition pattern of severity from normal controls to acute SARS patients. The rank of SARS severity was significantly correlated with the recovery period (in days) and with the clinical pulmonary infection score. CONCLUSION: The use of the GAP approach has proved useful in analyzing the complexity and continuity of biological systems. The severity rank derived from the global expression profile of significantly regulated genes in patients may be useful for further elucidating the pathophysiology of their disease

A huge-amplitude white-light superflare on a L0 brown dwarf discovered by GWAC survey

White-light superflares from ultra cool stars are thought to be resulted from magnetic reconnection, but the magnetic dynamics in a fully convective star is not clear yet. In this paper, we report a stellar superflare detected with the Ground Wide Angle Camera (GWAC), along with rapid follow-ups with the F60A, Xinglong 2.16m and LCOGT telescopes. The effective temperature of the counterpart is estimated to be $2200\pm50$K by the BT-Settl model, corresponding to a spectral type of L0. The $R-$band light curve can be modeled as a sum of three exponential decay components, where the impulsive component contributes a fraction of 23\% of the total energy, while the gradual and the shallower decay phases emit 42\% and 35\% of the total energy, respectively. The strong and variable Balmer narrow emission lines indicate the large amplitude flare is resulted from magnetic activity. The bolometric energy released is about $6.4\times10^{33}$ ergs, equivalent to an energy release in a duration of 143.7 hours at its quiescent level. The amplitude of $\Delta R=-8.6$mag ( or $\Delta V=-11.2$ mag), placing it one of the highest amplitudes of any ultra cool star recorded with excellent temporal resolution. We argue that a stellar flare with such rapidly decaying and huge amplitude at distances greater than 1 kpc may be false positive in searching for counterparts of catastrophic events such as gravitational wave events or gamma-ray bursts, which are valuable in time-domain astronomy and should be given more attention.Comment: 9 pages, 5 figures, 1 table, MNRAS accepte

Real-time Monitoring for the Next Core-Collapse Supernova in JUNO

Core-collapse supernova (CCSN) is one of the most energetic astrophysical events in the Universe. The early and prompt detection of neutrinos before (pre-SN) and during the SN burst is a unique opportunity to realize the multi-messenger observation of the CCSN events. In this work, we describe the monitoring concept and present the sensitivity of the system to the pre-SN and SN neutrinos at the Jiangmen Underground Neutrino Observatory (JUNO), which is a 20 kton liquid scintillator detector under construction in South China. The real-time monitoring system is designed with both the prompt monitors on the electronic board and online monitors at the data acquisition stage, in order to ensure both the alert speed and alert coverage of progenitor stars. By assuming a false alert rate of 1 per year, this monitoring system can be sensitive to the pre-SN neutrinos up to the distance of about 1.6 (0.9) kpc and SN neutrinos up to about 370 (360) kpc for a progenitor mass of 30$M_{\odot}$ for the case of normal (inverted) mass ordering. The pointing ability of the CCSN is evaluated by using the accumulated event anisotropy of the inverse beta decay interactions from pre-SN or SN neutrinos, which, along with the early alert, can play important roles for the followup multi-messenger observations of the next Galactic or nearby extragalactic CCSN.Comment: 24 pages, 9 figure

Search for neutral MSSM Higgs bosons decaying to a pair of tau leptons in pp collisions

Peer reviewe

Measurement of top quark–antiquark pair production in association with a W or Z boson in pp collisions at √s=8 TeV

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Study of hadronic event-shape variables in multijet final states in pp collisions at √s=7 TeV

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