Biodegradability of extractives in sapwood and heartwood from Scots pine by sapstain and white rot fungi

1 Division of Wood Science, Sub-department of Forestry, Wageningen Agricultural University, Wageningen, The Netherlands 2 Instituto de Recursos Naturales y Agrobiología (IRNA), Consejo Superior de Investigaciones Científicas (CSIC), Sevilla, SpainThe fungal degradation of lipophilic extractives in sapwood and heartwood from Scots pine (Pinus sylvestris) was studied. In sapwood, the white rot fungi, Bjerkandera sp. and Funalia trogii, removed higher amounts of extractives than the sapstain strains, Ophiostoma ainoae and Ceratocystis allantospora. Triglycerides, long chain fatty acids, steryl esters and waxes in pine sapwood were almost completely degraded by all the fungi. Sterols and resin acids were also extensively degraded by the white rot strains; however, these components were not or only poorly removed by the sapstain fungi. The removal of total extractives by all the fungal strains was higher in sapwood as compared to heartwood. The highly concentrated extractive fraction in pine heartwood mainly consists of resin acids. As observed in sapwood, sapstain were also poorly effective in the degradation of the resin acids present in heartwood. The fungal degradation of heartwood extractives was not only limited by the degradative ability of the various test microorganisms, but also by the inhibitory effect exerted by the extractive fraction. The white rot fungus F. trogii was particularly inhibited on heartwood. Bjerkandera sp. showed a higher tolerance to toxic extractives and was the most efficient fungus in degrading extractive constituents in both Scots pine heartwood and sapwood. Therefore, Bjerkandera sp. strain BOS55 should be considered as a potential agent for pitch control in pulp and paper manufacture.This study has been carried out with financial support from the Commission of the European Communities, Agriculture and Fisheries (FAIR) contract no. CT 95–0560, “Wood extractives in pulp and paper manufacture: technical and environmental implications and biological removal”.Peer reviewe

Deep-sequencing reveals broad subtype-specific HCV resistance mutations associated with treatment failure

A percentage of hepatitis C virus (HCV)-infected patients fail direct acting antiviral (DAA)-based treatment regimens, often because of drug resistance-associated substitutions (RAS). The aim of this study was to characterize the resistance profile of a large cohort of patients failing DAA-based treatments, and investigate the relationship between HCV subtype and failure, as an aid to optimizing management of these patients. A new, standardized HCV-RAS testing protocol based on deep sequencing was designed and applied to 220 previously subtyped samples from patients failing DAA treatment, collected in 39 Spanish hospitals. The majority had received DAA-based interferon (IFN) a-free regimens; 79% had failed sofosbuvir-containing therapy. Genomic regions encoding the nonstructural protein (NS) 3, NS5A, and NS5B (DAA target regions) were analyzed using subtype-specific primers. Viral subtype distribution was as follows: genotype (G) 1, 62.7%; G3a, 21.4%; G4d, 12.3%; G2, 1.8%; and mixed infections 1.8%. Overall, 88.6% of patients carried at least 1 RAS, and 19% carried RAS at frequencies below 20% in the mutant spectrum. There were no differences in RAS selection between treatments with and without ribavirin. Regardless of the treatment received, each HCV subtype showed specific types of RAS. Of note, no RAS were detected in the target proteins of 18.6% of patients failing treatment, and 30.4% of patients had RAS in proteins that were not targets of the inhibitors they received. HCV patients failing DAA therapy showed a high diversity of RAS. Ribavirin use did not influence the type or number of RAS at failure. The subtype-specific pattern of RAS emergence underscores the importance of accurate HCV subtyping. The frequency of “extra-target” RAS suggests the need for RAS screening in all three DAA target regions

Ultrahigh energy neutrinos at the pierre auger observatory

The observation of ultrahigh energy neutrinos (UHEs) has become a priority in experimental astroparticle physics. UHEs can be detected with a variety of techniques. In particular, neutrinos can interact in the atmosphere (downward-going ) or in the Earth crust (Earth-skimming ), producing air showers that can be observed with arrays of detectors at the ground. With the surface detector array of the Pierre Auger Observatory we can detect these types of cascades. The distinguishing signature for neutrino events is the presence of very inclined showers produced close to the ground (i.e., after having traversed a large amount of atmosphere). In this work we review the procedure and criteria established to search for UHEs in the data collected with the ground array of the Pierre Auger Observatory.This includes Earth-skimming as well as downward-going neutrinos. No neutrino candidates have been found, which allows us to place competitive limits to the diffuse flux of UHEs in the EeV range and above

Description of Atmospheric Conditions at the Pierre Auger Observatory using the Global Data Assimilation System (GDAS)

Atmospheric conditions at the site of a cosmic ray observatory must be known for reconstructing observed extensive air showers. The Global Data Assimilation System (GDAS) is a global atmospheric model predicated on meteorological measurements and numerical weather predictions. GDAS provides altitude-dependent profiles of the main state variables of the atmosphere like temperature, pressure, and humidity. The original data and their application to the air shower reconstruction of the Pierre Auger Observatory are described. By comparisons with radiosonde and weather station measurements obtained on-site in Malarg\"ue and averaged monthly models, the utility of the GDAS data is shown

Reconstruction of events recorded with the surface detector of the Pierre Auger Observatory

Cosmic rays arriving at Earth collide with the upper parts of the atmosphere, thereby inducing extensive air showers. When secondary particles from the cascade arrive at the ground, they are measured by surface detector arrays. We describe the methods applied to the measurements of the surface detector of the Pierre Auger Observatory to reconstruct events with zenith angles less than 60o using the timing and signal information recorded using the water-Cherenkov detector stations. In addition, we assess the accuracy of these methods in reconstructing the arrival directions of the primary cosmic ray particles and the sizes of the induced showers

Suberin Composition from different Bark Layers of Quercus Suber L. by py-gc/ms in the Presence of Tetramethylammonium Hydroxide (TMAH)

In previous studies we found significant differences in the suberin content with respect to the bark layer of Quercus suber samples. In this study the monomer composition of suberin from the two bark layers (i.e., back and cork) of three provenances (Extremadura, Castile-la Mancha, and Portugal) was investigated using pyrolysis in the presence of tetramethylammonium hydroxide (TMAH) with gas chromatography-mass spectrometry (GC/MS). The major compounds released were octadec-9-enedioic acid, docosanedioic acid, and 9,10-epoxyocta-decanedioic acid with mean values of 17%, 14.5%, and 11%, respectively. The former is more abundant in back than in cork, and the latter in cork than in back with mean differences, in terms of percentages, between the back and cork of 4.3 ± 0.81 and 2.2 ± 0.52, respectivelyThis research was funded by the Spanish Ministry of Science and Innovation as part of the project CTM CTM2010-1518

Endemic hemicryptophyte grasslands of the high mountains of the Caribbean

20 páginas, 5 figuras, 2 tablas.Although there are numerous studies on the floristic composition of the Andean and Caribbean grasslands, there are limited information from a phytosociological point of view. This work therefore aims to highlight the differences in this important vegetation type in these two biodiversity hotspots to gain a better understanding of their floristic and vegetational richness. The floristic composition of Andean grasslands (Ecuador) and the island of Hispaniola is also studied. The reason for this comparative analysis of Andean and Caribbean territories is their tropical character and their bioclimatic similarities. The comparative analysis of Peruvian Andean and Colombian grasslands is based on floristic knowledge from the literature, our inventories on the island of Hispaniola, and the works of Peguero. We applied the phytosociological methodology of Braun-Blanquet and the code of phytosociological nomenclature. We performed a statistical analysis to verify the differences between both community types using the statistical packages PAST© and CAP3. The comparative analysis of Andean and Caribbean grasslands shows a clear floristic and biogeographical differentiation and reveals that the only ecological character they share is their high-mountain attribute. In the Caribbean these communities are found only on the island of Hispaniola (Dominican Republic) in the Central biogeographic sector, Central subprovince, Hispaniola province. These grasslands are exclusive to Hispaniola and have a high rate of endemics. We propose the following new syntaxa: the association Hyperico constanzae-Danthonietum domingensis, the alliance Hieracio domingensis-Deschampsion domingensis, the order Danthonietalia domingensis, and the class Deschampsio-Danthonietea domingensis. We found high biodiversity values for Andean and Caribbean areas. This is due to the intense anthropic activity on the island of Hispaniola, which has led to a high percentage of naturalized plants.Samplings were taken within the context of three projects by the AECI (Spanish International Cooperation Agency) from 2005 to 2007