458 research outputs found
Tight junction properties of the immortalized human bronchial epithelial cell lines Caluâ3 and 16HBE14oâ
Mean-atom-trajectory model for the velocity autocorrelation function of monatomic liquids
We present a model for the motion of an average atom in a liquid or
supercooled liquid state and apply it to calculations of the velocity
autocorrelation function and diffusion coefficient . The model
trajectory consists of oscillations at a distribution of frequencies
characteristic of the normal modes of a single potential valley, interspersed
with position- and velocity-conserving transits to similar adjacent valleys.
The resulting predictions for and agree remarkably well with MD
simulations of Na at up to almost three times its melting temperature. Two
independent processes in the model relax velocity autocorrelations: (a)
dephasing due to the presence of many frequency components, which operates at
all temperatures but which produces no diffusion, and (b) the transit process,
which increases with increasing temperature and which produces diffusion.
Because the model provides a single-atom trajectory in real space and time,
including transits, it may be used to calculate all single-atom correlation
functions.Comment: LaTeX, 8 figs. This is an updated version of cond-mat/0002057 and
cond-mat/0002058 combined Minor changes made to coincide with published
versio
High Magnetic Field Microwave Conductivity of 2D Electrons in an Array of Antidots
We measure the high magnetic field () microwave conductivity,
Re, of a high mobility 2D electron system containing an antidot
array. Re vs frequency () increases strongly in the regime of
the fractional quantum Hall effect series, with Landau filling .
At microwave , Re vs exhibits a broad peak centered around
. On the peak, the 10 GHz Re can exceed its dc-limit
value by a factor of 5. This enhanced microwave conductivity is unobservable
for temperature K, and grows more pronounced as is
decreased. The effect may be due to excitations supported by the antidot edges,
but different from the well-known edge magnetoplasmons.Comment: 4 pages, 3 figures, revtex
Topological Superfluid in one-dimensional Ultracold Atomic System with Spin-Orbit Coupling
We propose a one-dimensional Hamiltonian which supports Majorana
fermions when -wave superfluid appears in the ultracold atomic
system and obtain the phase-separation diagrams both for the
time-reversal-invariant case and time-reversal-symmetry-breaking case. From the
phase-separation diagrams, we find that the single Majorana fermions exist in
the topological superfluid region, and we can reach this region by tuning the
chemical potential and spin-orbit coupling . Importantly, the
spin-orbit coupling has realized in ultracold atoms by the recent experimental
achievement of synthetic gauge field, therefore, our one-dimensional ultra-cold
atomic system described by is a promising platform to find the
mysterious Majorana fermions.Comment: 5 papers, 2 figure
An MPI-CUDA Implementation for Massively Parallel Incompressible Flow Computations on Multi-GPU Clusters
Modern graphics processing units (GPUs) with many-core architectures have emerged as general-purpose parallel computing platforms that can accelerate simulation science applications tremendously. While multi-GPU workstations with several TeraFLOPS of peak computing power are available to accelerate computational problems, larger problems require even more resources. Conventional clusters of central processing units (CPU) are now being augmented with multiple GPUs in each compute-node to tackle large problems. The heterogeneous architecture of a multi-GPU cluster with a deep memory hierarchy creates unique challenges in developing scalable and efficient simulation codes. In this study, we pursue mixed MPI-CUDA implementations and investigate three strategies to probe the efficiency and scalability of incompressible flow computations on the Lincoln Tesla cluster at the National Center for Supercomputing Applications (NCSA). We exploit some of the advanced features of MPI and CUDA programming to overlap both GPU data transfer and MPI communications with computations on the GPU. We sustain approximately 2.4 TeraFLOPS on the 64 nodes of the NCSA Lincoln Tesla cluster using 128 GPUs with a total of 30,720 processing elements. Our results demonstrate that multi-GPU clusters can substantially accelerate computational fluid dynamics (CFD) simulations
A Full-Depth Amalgamated Parallel 3D Geometric Multigrid Solver for GPU Clusters
Numerical computations of incompressible flow equations with pressure-based algorithms necessitate the solution of an elliptic Poisson equation, for which multigrid methods are known to be very efficient. In our previous work we presented a dual-level (MPI-CUDA) parallel implementation of the Navier-Stokes equations to simulate buoyancy-driven incompressible fluid flows on GPU clusters with simple iterative methods while focusing on the scalability of the overall solver. In the present study we describe the implementation and performance of a multigrid method to solve the pressure Poisson equation within our MPI-CUDA parallel incompressible flow solver. Various design decisions and algorithmic choices for multigrid methods are explored in light of NVIDIAâs recent Fermi architecture. We discuss how unique aspects of an MPI-CUDA implementation for GPU clusters is related to the software choices made to implement the multigrid method. We propose a new coarse grid solution method of embedded multigrid with amalgamation and show that the parallel implementation retains the numerical efficiency of the multigrid method. Performance measurements on the NCSA Lincoln and TACC Longhorn clusters are presented for up to 64 GPUs
Scalability of Incompressible Flow Computations on Multi-GPU Clusters Using Dual-Level and Tri-Level Parallelism
High performance computing using graphics processing units (GPUs) is gaining popularity in the scientific computing field, with many large compute clusters being augmented with multiple GPUs in each node. We investigate hybrid tri-level (MPI-OpenMP-CUDA) parallel implementations to explore the efficiency and scalability of incompressible flow computations on GPU clusters up to 128 GPUS. This work details some of the unique issues faced when merging fine-grain parallelism on the GPU using CUDA with coarse-grain parallelism using OpenMP for intra-node and MPI for inter-node communication. Comparisons between the tri-level MPI-OpenMP-CUDA and dual-level MPI-CUDA implementations are shown using computationally large computational fluid dynamics (CFD) simulations. Our results demonstrate that a tri-level parallel implementation does not provide a significant advantage in performance over the dual-level implementation, however further research is needed to justify our conclusion for a cluster with a high GPU per node density or when using software that can utilize OpenMPâs fine-grain parallelism more effectively
Specific detection of fungal pathogens by 18S rRNA gene PCR in microbial keratitis
<p>Abstract</p> <p>Background</p> <p>The sensitivity and specificity of 18S rRNA polymerase chain reaction (PCR) in the detection of fungal aetiology of microbial keratitis was determined in thirty patients with clinical diagnosis of microbial keratitis.</p> <p>Methods</p> <p>Corneal scrapings from patients were used for Gram stain, culture and PCR analysis. PCR was performed with primer pairs targeted to the 18S rRNA gene. The result of the PCR was compared with conventional culture and Gram staining method. The PCR positive samples were identified by DNA sequencing of the internal transcribed spacer (ITS) region of the rRNA gene. Main outcome measures were sensitivity and specificity of PCR in the detection of fungus in corneal keratitis.</p> <p>Results</p> <p>Combination of microscopy and culture gave a positive result in 11 of 30 samples of microbial keratitis. PCR detected 10 of 11 samples that were positive by conventional method. One of the 19 samples that was negative by conventional method was positive by PCR. Statistical analysis revealed that the PCR to have a sensitivity of 90.9% and specificity of 94.7% in the detection of a fungal aetiology in microbial keratitis.</p> <p>Conclusion</p> <p>PCR is a rapid, sensitive and useful method to detect fungal aetiology in microbial keratitis.</p
Propaganda in an Age of Algorithmic Personalization: Expanding Literacy Research and Practice
In this commentary, the author considers the rise of algorithmic personalization and the power of propaganda as they shift the dynamic landscape of 21stâcentury literacy research and practice. Algorithmic personalization uses data from the behaviors, beliefs, interests, and emotions of the target audience to provide filtered digital content, targeted advertising, and differential product pricing to online users. As persuasive genres, advertising and propaganda may demand different types of reading practices than texts whose purpose is primarily informational or argumentative. Understanding the propaganda function of algorithmic personalization may lead to a deeper consideration of texts that activate emotion and tap into audience values for aesthetic, commercial, and political purposes. Increased attention to algorithmic personalization, propaganda, and persuasion in the context of Kâ12 literacy education may also help people cope with sponsored content, bots, and other forms of propaganda and persuasion that now circulate online
Search for a W' boson decaying to a bottom quark and a top quark in pp collisions at sqrt(s) = 7 TeV
Results are presented from a search for a W' boson using a dataset
corresponding to 5.0 inverse femtobarns of integrated luminosity collected
during 2011 by the CMS experiment at the LHC in pp collisions at sqrt(s)=7 TeV.
The W' boson is modeled as a heavy W boson, but different scenarios for the
couplings to fermions are considered, involving both left-handed and
right-handed chiral projections of the fermions, as well as an arbitrary
mixture of the two. The search is performed in the decay channel W' to t b,
leading to a final state signature with a single lepton (e, mu), missing
transverse energy, and jets, at least one of which is tagged as a b-jet. A W'
boson that couples to fermions with the same coupling constant as the W, but to
the right-handed rather than left-handed chiral projections, is excluded for
masses below 1.85 TeV at the 95% confidence level. For the first time using LHC
data, constraints on the W' gauge coupling for a set of left- and right-handed
coupling combinations have been placed. These results represent a significant
improvement over previously published limits.Comment: Submitted to Physics Letters B. Replaced with version publishe
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