Validation of magnetophonon spectroscopy as a tool for analyzing hot-electron effects in devices

It is shown that very high precision hot-electron magnetophonon experiments made on n+n−n+-GaAs sandwich device structures which are customized for magnetoresistance measurements can be very accurately modeled by a new Monte Carlo technique. The latter takes account of the Landau quantization and device architecture as well as material parameters. It is proposed that this combination of experiment and modeling yields a quantitative tool for the direct analysis of spatially localized very nonequilibrium electron distributions in small devices and low dimensional structures

GSH 91.5+2-114: A large HI shell in the outer part of the Galaxy

GSH91.5+2-114 is a large HI shell located in the outer Galaxy at a kinematic distance of about 15 kpc. It was first identified in the Canadian Galactic Plane Survey (CGPS) by Pineault et al. (2002) as being possibly associated with objects possessing infrared colors which indicates strong stellar winds. The HI shell has no obvious continuum counterpart in the CGPS radio images at 408 and 1420 MHz or in the IRAS images. We found no evidence for early-type massive stars, most likely as a result of the large extinction that is expected for this large distance. An analysis of the energetics and of the main physical parameters of the HI shell shows that this shell is likely the result of the combined action of the stellar winds and supernova explosions of many stars. We investigate whether a number of slightly extended regions characterized by a thermal radio continuum and located near the periphery of the HI shell could be the result of star formation triggered by the expanding shell.Comment: Accepted for publication in A&A, October 2010. Some figures were degraded to reduce file siz

Genome size evolution at the speciation level: The cryptic species complex Brachionus plicatilis (Rotifera)

<p>Abstract</p> <p>Background</p> <p>Studies on genome size variation in animals are rarely done at lower taxonomic levels, e.g., slightly above/below the species level. Yet, such variation might provide important clues on the tempo and mode of genome size evolution. In this study we used the flow-cytometry method to study the evolution of genome size in the rotifer <it>Brachionus plicatilis</it>, a cryptic species complex consisting of at least 14 closely related species.</p> <p>Results</p> <p>We found an unexpectedly high variation in this species complex, with genome sizes ranging approximately seven-fold (haploid '1C' genome sizes: 0.056-0.416 pg). Most of this variation (67%) could be ascribed to the major clades of the species complex, i.e. clades that are well separated according to most species definitions. However, we also found substantial variation (32%) at lower taxonomic levels - within and among genealogical species - and, interestingly, among species pairs that are not completely reproductively isolated. In one genealogical species, called <it>B</it>. 'Austria', we found greatly enlarged genome sizes that could roughly be approximated as multiples of the genomes of its closest relatives, which suggests that whole-genome duplications have occurred early during separation of this lineage. Overall, genome size was significantly correlated to egg size and body size, even though the latter became non-significant after controlling for phylogenetic non-independence.</p> <p>Conclusions</p> <p>Our study suggests that substantial genome size variation can build up early during speciation, potentially even among isolated populations. An alternative, but not mutually exclusive interpretation might be that reproductive isolation tends to build up unusually slow in this species complex.</p

DNA methylation analysis by digital bisulfite genomic sequencing and digital MethyLight

Alterations in cytosine-5 DNA methylation are frequently observed in most types of human cancer. Although assays utilizing PCR amplification of bisulfite-converted DNA are widely employed to analyze these DNA methylation alterations, they are generally limited in throughput capacity, detection sensitivity, and or resolution. Digital PCR, in which a DNA sample is analyzed in distributive fashion over multiple reaction chambers, allows for enumeration of discrete template DNA molecules, as well as sequestration of non-specific primer annealing templates into negative chambers, thereby increasing the signal-to-noise ratio in positive chambers. Here, we have applied digital PCR technology to bisulfite-converted DNA for single-molecule high-resolution DNA methylation analysis and for increased sensitivity DNA methylation detection. We developed digital bisulfite genomic DNA sequencing to efficiently determine single-basepair DNA methylation patterns on single-molecule DNA templates without an interim cloning step. We also developed digital MethyLight, which surpasses traditional MethyLight in detection sensitivity and quantitative accuracy for low quantities of DNA. Using digital MethyLight, we identified single-molecule, cancer-specific DNA hypermethylation events in the CpG islands of RUNX3, CLDN5 and FOXE1 present in plasma samples from breast cancer patients

Concert recording 2014-03-12a

[Track 01]. This nearly was mine from South Pacific / Rodgers and Hammerstein -- [Track 02]. Old man river from Showboat / Kern ; Hammerstein -- [Track 03]. Visione veneziana / Renato Brogi -- [Track 04]. Widmung / Robert Schumann -- [Track 05]. This is my beloved from Kismet / Wright ; Forrest -- [Track 06]. Vision fugitive from Herodiade / Jules Massenet -- [Track 07]. I will be loved tonight from I love you, you\u27re perfect, now change / DiPietro ; Roberts -- [Track 08]. Doin\u27 what comes natur\u27lly from Annie get your gun / Irving Berlin -- [Track 09]. I carry your heart / John Duke -- [Track 10]. Standchen / Franz Schubert -- [Track 11]. Ho capito...signor, si! from Don Giovanni / W.A. Mozart -- [Track 12]. When Fredric was a little lad from The pirates of Penzance / Gilbert and Sullivan -- [Track 13]. In trutina from Carmina burana / Carl Orff -- [Track 14]. Ombra mai fu from Serse / Handel -- [Track 15]. Younger than springtime from South Pacific / Rodgers and Hammerstein -- [Track 16]. Der Atlas / Franz Schubert

On the need for an international effort to capture, share and use crystallization screening data

Development of an ontology for the description of crystallization experiments and results is proposed

SRAO CO Observation of 11 Supernova Remnants in l = 70 to 190 deg

We present the results of 12CO J = 1-0 line observations of eleven Galactic supernova remnants (SNRs) obtained using the Seoul Radio Astronomy Observatory (SRAO) 6-m radio telescope. The observation was made as a part of the SRAO CO survey of SNRs between l = 70 and 190 deg, which is intended to identify SNRs interacting with molecular clouds. The mapping areas for the individual SNRs are determined to cover their full extent in the radio continuum. We used halfbeam grid spacing (60") for 9 SNRs and full-beam grid spacing (120") for the rest. We detected CO emission towards most of the remnants. In six SNRs, molecular clouds showed a good spatial relation with their radio morphology, although no direct evidence for the interaction was detected. Two SNRs are particularly interesting: G85.4+0.7, where there is a filamentary molecular cloud along the radio shell, and 3C434.1, where a large molecular cloud appears to block the western half of the remnant. We briefly summarize the results obtained for individual SNRs.Comment: Accepted for publication in Astrophysics & Space Science. 12 pages, 12 figures, and 3 table

Stability Properties of Underdominance in Finite Subdivided Populations

In isolated populations underdominance leads to bistable evolutionary dynamics: below a certain mutant allele frequency the wildtype succeeds. Above this point, the potentially underdominant mutant allele fixes. In subdivided populations with gene flow there can be stable states with coexistence of wildtypes and mutants: polymorphism can be maintained because of a migration-selection equilibrium, i.e., selection against rare recent immigrant alleles that tend to be heterozygous. We focus on the stochastic evolutionary dynamics of systems where demographic fluctuations in the coupled populations are the main source of internal noise. We discuss the influence of fitness, migration rate, and the relative sizes of two interacting populations on the mean extinction times of a group of potentially underdominant mutant alleles. We classify realistic initial conditions according to their impact on the stochastic extinction process. Even in small populations, where demographic fluctuations are large, stability properties predicted from deterministic dynamics show remarkable robustness. Fixation of the mutant allele becomes unlikely but the time to its extinction can be long

Hox cluster duplication in the basal teleost Hiodon alosoides (Osteoglossomorpha)

Large-scale—even genome-wide—duplications have repeatedly been invoked as an explanation for major radiations. Teleosts, the most species-rich vertebrate clade, underwent a “fish-specific genome duplication” (FSGD) that is shared by most ray-finned fish lineages. We investigate here the Hox complement of the goldeye (Hiodon alosoides), a representative of Osteoglossomorpha, the most basal teleostean clade. An extensive PCR survey reveals that goldeye has at least eight Hox clusters, indicating a duplicated genome compared to basal actinopterygians. The possession of duplicated Hox clusters is uncoupled to species richness. The Hox system of the goldeye is substantially different from that of other teleost lineages, having retained several duplicates of Hox genes for which crown teleosts have lost at least one copy. A detailed analysis of the PCR fragments as well as full length sequences of two HoxA13 paralogs, and HoxA10 and HoxC4 genes places the duplication event close in time to the divergence of Osteoglossomorpha and crown teleosts. The data are consistent with—but do not conclusively prove—that Osteoglossomorpha shares the FSGD

The RMS survey: galactic distribution of massive star formation

We have used the well-selected sample of~1750 embedded, young, massive stars identified by the Red MSX Source (RMS) survey to investigate the Galactic distribution of recent massive star formation. We present molecular line observations for ~800 sources without existing radial velocities. We describe the various methods used to assign distances extracted from the literature and solve the distance ambiguities towards approximately 200 sources located within the solar circle using archival HI data. These distances are used to calculate bolometric luminosities and estimate the survey completeness (~2 × 10 4 L⊙). In total, we calculate the distance and luminosity of ~1650 sources, one third of which are above the survey's completeness threshold. Examination of the sample's longitude, latitude, radial velocities and mid-infrared images has identified~120 small groups of sources, many of which are associated with well-known star formation complexes, such as G305, G333, W31, W43, W49 and W51. We compare the positional distribution of the sample with the expected locations of the spiral arms, assuming a model of the Galaxy consisting of four gaseous arms. The distribution of young massive stars in the Milky Way is spatially correlated with the spiral arms, with strong peaks in the source position and luminosity distributions at the arms' Galactocentric radii. The overall source and luminosity surface densities are both well correlated with the surface density of the molecular gas, which suggests that the massive star formation rate per unit molecular mass is approximately constant across the Galaxy. A comparison of the distribution of molecular gas and the young massive stars to that in other nearby spiral galaxies shows similar radial dependences. We estimate the total luminosity of the embedded massive star population to be ~0.76 × 10 8 L⊙, 30 per cent of which is associated with the 10 most active star-forming complexes.We measure the scaleheight as a function of the Galactocentric distance and find that it increases only modestly from ~20-30 pc between 4 and 8 kpc, but much more rapidly at larger distances. © 2013 The Authors