442 research outputs found
Prosthetic Avian Vocal Organ Controlled by a Freely Behaving Bird Based on a Low Dimensional Model of the Biomechanical Periphery
Because of the parallels found with human language production and acquisition, birdsong is an ideal animal model to study general mechanisms underlying complex, learned motor behavior. The rich and diverse vocalizations of songbirds emerge as a result of the interaction between a pattern generator in the brain and a highly nontrivial nonlinear periphery. Much of the complexity of this vocal behavior has been understood by studying the physics of the avian vocal organ, particularly the syrinx. A mathematical model describing the complex periphery as a nonlinear dynamical system leads to the conclusion that nontrivial behavior emerges even when the organ is commanded by simple motor instructions: smooth paths in a low dimensional parameter space. An analysis of the model provides insight into which parameters are responsible for generating a rich variety of diverse vocalizations, and what the physiological meaning of these parameters is. By recording the physiological motor instructions elicited by a spontaneously singing muted bird and computing the model on a Digital Signal Processor in real-time, we produce realistic synthetic vocalizations that replace the bird's own auditory feedback. In this way, we build a bio-prosthetic avian vocal organ driven by a freely behaving bird via its physiologically coded motor commands. Since it is based on a low-dimensional nonlinear mathematical model of the peripheral effector, the emulation of the motor behavior requires light computation, in such a way that our bio-prosthetic device can be implemented on a portable platform
Genetic and antigenic variation of the bovine tick-borne pathogen Theileria parva in the Great Lakes region of Central Africa
BACKGROUND : Theileria parva causes East Coast fever (ECF), one of the most economically important tick-borne diseases
of cattle in sub-Saharan Africa. A live immunisation approach using the infection and treatment method (ITM)
provides a strong long-term strain-restricted immunity. However, it typically induces a tick-transmissible carrier state
in cattle and may lead to spread of antigenically distinct parasites. Thus, understanding the genetic composition of T.
parva is needed prior to the use of the ITM vaccine in new areas. This study examined the sequence diversity and the
evolutionary and biogeographical dynamics of T. parva within the African Great Lakes region to better understand the
epidemiology of ECF and to assure vaccine safety. Genetic analyses were performed using sequences of two antigencoding
genes, Tp1 and Tp2, generated among 119 T. parva samples collected from cattle in four agro-ecological zones
of DRC and Burundi.
RESULTS : The results provided evidence of nucleotide and amino acid polymorphisms in both antigens, resulting
in 11 and 10 distinct nucleotide alleles, that predicted 6 and 9 protein variants in Tp1 and Tp2, respectively. Theileria
parva samples showed high variation within populations and a moderate biogeographical sub-structuring due to the
widespread major genotypes. The diversity was greater in samples from lowlands and midlands areas compared to
those from highlands and other African countries. The evolutionary dynamics modelling revealed a signal of selective
evolution which was not preferentially detected within the epitope-coding regions, suggesting that the observed
polymorphism could be more related to gene flow rather than recent host immune-based selection. Most alleles
isolated in the Great Lakes region were closely related to the components of the trivalent Muguga vaccine.
CONCLUSIONS : Our findings suggest that the extensive sequence diversity of T. parva and its biogeographical distribution
mainly depend on host migration and agro-ecological conditions driving tick population dynamics. Such
patterns are likely to contribute to the epidemic and unstable endemic situations of ECF in the region. However, the fact that ubiquitous alleles are genetically similar to the components of the Muguga vaccine together with the limited
geographical clustering may justify testing the existing trivalent vaccine for cross-immunity in the region.Additional file 1: Table S1. Cattle blood sample distribution across agroecological
zones.Additional file 2: Table S2. Nucleotide and amino acid sequences of Tp1
and Tp2 antigen epitopes from T. parva Muguga reference sequence.Additional file 3: Table S3. Characteristics of 119 T. parva samples
obtained from cattle in different agro-ecological zones (AEZs) of The
Democratic Republic of Congo and Burundi.Additional file 4: Figure S1. Multiple sequence alignment of the 11 Tp1
gene alleles obtained in this study.Additional file 5: Table S4. Estimates of evolutionary divergence
between gene alleles for Tp1 and Tp2, using proportion nucleotide
distance.Additional file 6: Table S5. Tp1 and Tp2 genes alleles with their corresponding
antigen variants.Additional file 7: Table S6. Amino acid variants of Tp1 and Tp2 CD8+
T
cell target epitopes of T. parva from DRC and Burundi.Additional file 8: Figure S2. Multiple sequence alignment of the 10 Tp2
gene alleles obtained in this study.Additional file 9: Table S7. Distribution of Tp1 gene alleles of T. parva
from cattle and buffalo in the sub-Saharan region of Africa.Additional file 10: Table S8. Distribution of Tp2 gene alleles of T. parva
from cattle and buffalo in the sub-Saharan region of Africa.Additional file 11: Figure S3. Neighbor-joining tree showing phylogenetic
relationships among 48 Tp1 gene alleles described in Africa.Additional file 12: Figure S4. Phylogenetic tree showing the relationships
among concatenated Tp1 and Tp2 nucleotide sequences of 93 T.
parva samples from cattle in DRC and Burundi.This study is part of the PhD work supported by the University of Namur (UNamur,
Belgium) through the UNamur-CERUNA institutional PhD grant awarded
to GSA for bioinformatic analyses, interpretation of data and manuscript write
up in Belgium. The laboratory aspects (molecular biology analysis) of the
project were supported by the BecA-ILRI Hub through the Africa Biosciences
Challenge Fund (ABCF) programme. The ABCF Programme is funded by
the Australian Department for Foreign Affairs and Trade (DFAT) through the
BecA-CSIRO partnership; the Syngenta Foundation for Sustainable Agriculture
(SFSA); the Bill & Melinda Gates Foundation (BMGF); the UK Department for International Development (DFID); and the Swedish International Development
Cooperation Agency (Sida). The ABCF Fellowship awarded to GAS was
funded by BMGF grant (OPP1075938). Sample collection, field equipment and
preliminary sample processing were supported through the âTheileriaâ project
co-funded to the Université Evangélique en Afrique (UEA) by the Agence
Universitaire de la Francophonie (AUF) and the Communauté Economique
des Pays des Grands Lacs (CEPGL). The International Foundation for Science
(IFS, Stockholm, Sweden) supported the individual scholarship awarded to
GSA (grant no. IFS-92890CA3) for field work and part of field equipment to the
âTheileriaâ project.http://www.parasitesandvectors.comam2020Veterinary Tropical Disease
Recommended from our members
Measurement of B(B-->X_s {\gamma}), the B-->X_s {\gamma} photon energy spectrum, and the direct CP asymmetry in B-->X_{s+d} {\gamma} decays
The photon spectrum in B --> X_s {\gamma} decay, where X_s is any strange
hadronic state, is studied using a data sample of (382.8\pm 4.2) \times 10^6
e^+ e^- --> \Upsilon(4S) --> BBbar events collected by the BABAR experiment at
the PEP-II collider. The spectrum is used to measure the branching fraction B(B
--> X_s \gamma) = (3.21 \pm 0.15 \pm 0.29 \pm 0.08)\times 10^{-4} and the
first, second, and third moments = 2.267 \pm 0.019 \pm 0.032 \pm
0.003 GeV,, )^2> = 0.0484 \pm 0.0053 \pm 0.0077 \pm
0.0005 GeV^2, and )^3> = -0.0048 \pm 0.0011 \pm 0.0011
\pm 0.0004 GeV^3, for the range E_\gamma > 1.8 GeV, where E_{\gamma} is the
photon energy in the B-meson rest frame. Results are also presented for
narrower E_{\gamma} ranges. In addition, the direct CP asymmetry A_{CP}(B -->
X_{s+d} \gamma) is measured to be 0.057 \pm 0.063. The spectrum itself is also
unfolded to the B-meson rest frame; that is the frame in which theoretical
predictions for its shape are made.Comment: 37 pages, 19 postscript figures, submitted to Phys. Rev. D. No
analysis or results have changed from previous version. Some changes to
improve clarity based on interactions with Phys. Rev. D referees, including
one new Figure (Fig. 13), and some minor wording/punctuation/spelling
mistakes fixe
Recommended from our members
Precise Measurement of the e+ e- --> pi+ pi- (gamma) Cross Section with the Initial-State Radiation Method at BABAR
A precise measurement of the cross section of the process
from threshold to an energy of 3GeV is obtained
with the initial-state radiation (ISR) method using 232fb of data
collected with the BaBar detector at center-of-mass energies near
10.6GeV. The ISR luminosity is determined from a study of the leptonic process
, which is found to agree with the
next-to-leading-order QED prediction to within 1.1%. The cross section for the
process is obtained with a systematic uncertainty
of 0.5% in the dominant resonance region. The leading-order hadronic
contribution to the muon magnetic anomaly calculated using the measured
cross section from threshold to 1.8GeV is .Comment: 58 pages, 56 figures, to be submitted to Phys. Rev.
Measurement of Branching Fractions and Rate Asymmetries in the Rare Decays B -> K(*) l+ l-
In a sample of 471 million BB events collected with the BABAR detector at the
PEP-II e+e- collider we study the rare decays B -> K(*) l+ l-, where l+ l- is
either e+e- or mu+mu-. We report results on partial branching fractions and
isospin asymmetries in seven bins of di-lepton mass-squared. We further present
CP and lepton-flavor asymmetries for di-lepton masses below and above the J/psi
resonance. We find no evidence for CP or lepton-flavor violation. The partial
branching fractions and isospin asymmetries are consistent with the Standard
Model predictions and with results from other experiments.Comment: 16 pages, 14 figures, accepted by Phys. Rev.
Study of CP violation in Dalitz-plot analyses of B0 --> K+K-KS, B+ --> K+K-K+, and B+ --> KSKSK+
We perform amplitude analyses of the decays , , and , and measure CP-violating
parameters and partial branching fractions. The results are based on a data
sample of approximately decays, collected with the
BABAR detector at the PEP-II asymmetric-energy factory at the SLAC National
Accelerator Laboratory. For , we find a direct CP asymmetry
in of , which differs
from zero by . For , we measure the
CP-violating phase .
For , we measure an overall direct CP asymmetry of
. We also perform an angular-moment analysis of
the three channels, and determine that the state can be described
well by the sum of the resonances , , and
.Comment: 35 pages, 68 postscript figures. v3 - minor modifications to agree
with published versio
Branching fraction and form-factor shape measurements of exclusive charmless semileptonic B decays, and determination of |V_{ub}|
We report the results of a study of the exclusive charmless semileptonic
decays, B^0 --> pi^- l^+ nu, B^+ --> pi^0 l^+ nu, B^+ --> omega l^+ nu, B^+ -->
eta l^+ nu and B^+ --> eta^' l^+ nu, (l = e or mu) undertaken with
approximately 462x10^6 B\bar{B} pairs collected at the Upsilon(4S) resonance
with the BABAR detector. The analysis uses events in which the signal B decays
are reconstructed with a loose neutrino reconstruction technique. We obtain
partial branching fractions in several bins of q^2, the square of the momentum
transferred to the lepton-neutrino pair, for B^0 --> pi^- l^+ nu, B^+ --> pi^0
l^+ nu, B^+ --> omega l^+ nu and B^+ --> eta l^+ nu. From these distributions,
we extract the form-factor shapes f_+(q^2) and the total branching fractions
BF(B^0 --> pi^- l^+ nu) = (1.45 +/- 0.04_{stat} +/- 0.06_{syst})x10^-4
(combined pi^- and pi^0 decay channels assuming isospin symmetry), BF(B^+ -->
omega l^+ nu) = (1.19 +/- 0.16_{stat} +/- 0.09_{syst})x10^-4 and BF(B^+ --> eta
l^+ nu) = (0.38 +/- 0.05_{stat} +/- 0.05_{syst})x10^-4. We also measure BF(B^+
--> eta^' l^+ nu) = (0.24 +/- 0.08_{stat} +/- 0.03_{syst})x10^-4. We obtain
values for the magnitude of the CKM matrix element V_{ub} by direct comparison
with three different QCD calculations in restricted q^2 ranges of B --> pi l^+
nu decays. From a simultaneous fit to the experimental data over the full q^2
range and the FNAL/MILC lattice QCD predictions, we obtain |V_{ub}| = (3.25 +/-
0.31)x10^-3, where the error is the combined experimental and theoretical
uncertainty.Comment: 35 pages, 14 figures, submitted to PR
Observation of time-reversal violation in the B0 meson system
The individually named authors work collectively as The BABAR Collaboration. Copyright @ 2012 American Physical Society.Although CP violation in the B meson system has been well established by the B factories, there has been no direct observation of time-reversal violation. The decays of entangled neutral B mesons into definite flavor states (B0 or BÂŻÂŻÂŻ0), and J/ÏK0L or ccÂŻK0S final states (referred to as B+ or Bâ), allow comparisons between the probabilities of four pairs of T-conjugated transitions, for example, BÂŻÂŻÂŻ0âBâ and BââBÂŻÂŻÂŻ0, as a function of the time difference between the two B decays. Using 468Ă106 BBÂŻÂŻÂŻ pairs produced in ΄(4S) decays collected by the BABAR detector at SLAC, we measure T-violating parameters in the time evolution of neutral B mesons, yielding ÎS+T=â1.37±0.14(stat)±0.06(syst) and ÎSâT=1.17±0.18(stat)±0.11(syst). These nonzero results represent the first direct observation of T violation through the exchange of initial and final states in transitions that can only be connected by a T-symmetry transformation.DOE and NSF (USA), NSERC (Canada), CEA and CNRS-IN2P3 (France), BMBF and
DFG(Germany), INFN (Italy), FOM (The Netherlands),
NFR (Norway), MES (Russia), MINECO (Spain), STFC
(United Kingdom). Individuals have received support from
the Marie Curie EIF (European Union), the A. P. Sloan
Foundation (USA) and the Binational Science Foundation
(USA-Israel)
- âŠ