Tree biomass equations from terrestrial LiDAR : a case study in Guyana

Large uncertainties in tree and forest carbon estimates weaken national efforts to accurately estimate aboveground biomass (AGB) for their national monitoring, measurement, reporting and verification system. Allometric equations to estimate biomass have improved, but remain limited. They rely on destructive sampling; large trees are under-represented in the data used to create them; and they cannot always be applied to different regions. These factors lead to uncertainties and systematic errors in biomass estimations. We developed allometric models to estimate tree AGB in Guyana. These models were based on tree attributes (diameter, height, crown diameter) obtained from terrestrial laser scanning (TLS) point clouds from 72 tropical trees and wood density. We validated our methods and models with data from 26 additional destructively harvested trees. We found that our best TLS-derived allometric models included crown diameter, provided more accurate AGB estimates (R-2 = 0.92-0.93) than traditional pantropical models (R-2 = 0.85-0.89), and were especially accurate for large trees (diameter > 70 cm). The assessed pantropical models underestimated AGB by 4 to 13%. Nevertheless, one pantropical model (Chave et al. 2005 without height) consistently performed best among the pantropical models tested (R-2 = 0.89) and predicted AGB accurately across all size classes-which but for this could not be known without destructive or TLS-derived validation data. Our methods also demonstrate that tree height is difficult to measure in situ, and the inclusion of height in allometric models consistently worsened AGB estimates. We determined that TLS-derived AGB estimates were unbiased. Our approach advances methods to be able to develop, test, and choose allometric models without the need to harvest trees

Chromosome Level Assembly of the Comma Butterfly (Polygonia c-album)

The comma butterfly (Polygonia c-album, Nymphalidae, Lepidoptera) is a model insect species, most notably in the study of phenotypic plasticity and plant-insect coevolutionary interactions. In order to facilitate the integration of genomic tools with a diverse body of ecological and evolutionary research, we assembled the genome of a Swedish comma using 10X sequencing, scaffolding with matepair data, genome polishing, and assignment to linkage groups using a high-density linkage map. The resulting genome is 373 Mb in size, with a scaffold N50 of 11.7 Mb and contig N50 of 11,2Mb. The genome contained 90.1% of single-copy Lepidopteran orthologs in a BUSCO analysis of 5,286 genes. A total of 21,004 gene-models were annotated on the genome using RNA-Seq data from larval and adult tissue in combination with proteins from the Arthropoda database, resulting in a high-quality annotation for which functional annotations were generated. We further documented the quality of the chromosomal assembly via synteny assessment with Melitaea cinxia. The resulting annotated, chromosome-level genome will provide an important resource for investigating coevolutionary dynamics and comparative analyses in Lepidoptera.Peer reviewe

Limitations of estimating branch volume from terrestrial laser scanning

Quantitative structural models (QSMs) are frequently used to simplify single tree point clouds obtained by terrestrial laser scanning (TLS). QSMs use geometric primitives to derive topological and volumetric information about trees. Previous studies have shown a high agreement between TLS and QSM total volume estimates alongside field measured data for whole trees. Although already broadly applied, the uncertainties of the combination of TLS and QSM modelling are still largely unexplored. In our study, we investigated the effect of scanning distance on length and volume estimates of branches when deriving QSMs from TLS data. We scanned ten European beech (Fagus sylvatica L.) branches with an average length of 2.6 m. The branches were scanned from distances ranging from 5 to 45 m at step intervals of 5 m from three scan positions each. Twelve close-range scans were performed as a benchmark. For each distance and branch, QSMs were derived. We found that with increasing distance, the point cloud density and the cumulative length of the reconstructed branches decreased, whereas individual volumes increased. Dependent on the QSM hyperparameters, at a scanning distance of 45 m, cumulative branch length was on average underestimated by − 75%, while branch volume was overestimated by up to + 539%. We assume that the high deviations are related to point cloud quality. As the scanning distance increases, the size of the individual laser footprints and the distances between them increase, making it more difficult to fully capture small branches and to adjust suitable QSMs

Pioglitazone and cause-specific risk of mortality in patients with type 2 diabetes: extended analysis from a European multidatabase cohort study.

OBJECTIVES: Describe and compare the risk of cardiovascular and non-cardiovascular mortality in patients whose antidiabetic therapy is modified to include pioglitazone compared with an alternative antidiabetic medication at the same stage of disease progression. RESEARCH DESIGN AND METHODS: This exploratory linked database cohort analysis used pooled health and mortality data from three European countries: Finland, Sweden and the UK. Propensity score together with exact matching was used to match 31 133 patients with type 2 diabetes first prescribed pioglitazone from 2000 to 2011, to 31 133 patients never prescribed pioglitazone. Exact matching variables were treatment stage, history of diabetes, diabetes complications and cardiovascular disease, and year of cohort entry. Mean follow-up time was 2.60 (SD 2.00) and 2.69 (SD 2.31) years in the pioglitazone and non-pioglitazone-exposed groups, respectively. Crude cause-specific mortality rates were ascertained. Association with pioglitazone use was estimated using Cox proportional hazards models adjusted a priori for country, age, sex, the propensity score quintile and time-dependent variables representing use of antidiabetic drugs. Stepwise testing identified no additional confounders to include in adjusted models. RESULTS: The crude mortality rate was lower in the pioglitazone-exposed group than the non-exposed group for both cardiovascular and non-cardiovascular mortality. Adjusted HRs comparing pioglitazone to alternative antidiabetic exposure were 0.58 (95% CI 0.52 to 0.63) and 0.63 (95% CI 0.58 to 0.68) for cardiovascular and non-cardiovascular mortality, respectively. A protective effect associated with pioglitazone was also found for all specific cardiovascular causes. CONCLUSIONS: This analysis suggests that pioglitazone is associated with a decrease in both cardiovascular and non-cardiovascular mortality. Results should be interpreted with caution due to the potential for residual confounding in this exploratory analysis. Further studies, specifically designed to test the association between pioglitazone use and patient-focused outcomes, are suggested. STUDY REGISTRATION NUMBER: European Network of Centres for Pharmacoepidemiology and Pharmacovigilance (ENCePP; EUPAS3626)

The Discrete Representation of Continuously Moving Indeterminate Objects

AbstractTo incorporate indeterminacy in spatio-temporal database systems, grey modeling method is used for the calculations of the discrete models of indeterminate two dimension continuously moving objects. The Grey Model GM (1, 1) model generated from the snapshot sequence reduces the randomness of discrete snapshot and generates the holistic measure of object's movements. Comparisons to traditional linear models show that when information is limited this model can be used in the interpolation and near future prediction of uncertain continuously moving spatio-temporal objects

All-Cause and Cause-Specific Mortality among Users of Basal Insulins NPH, Detemir, and Glargine

Background Insulin therapy in type 2 diabetes may increase mortality and cancer incidence, but the impact of different types of basal insulins on these endpoints is unclear. Compared to the traditional NPH insulin, the newer, longer-acting insulin analogues detemir and glargine have shown benefits in randomized controlled trials. Whether these advantages translate into lower mortality among users in real life is unknown. Objective To estimate the differences in all-cause and cause-specific mortality rates between new users of basal insulins in a population-based study in Finland. Methods 23 751 individuals aged >= 40 with type 2 diabetes, who initiated basal insulin therapy in 2006-2009 were identified from national registers, with comprehensive data for mortality, causes of death, and background variables. Propensity score matching was performed on characteristics. Follow-up time was up to 4 years (median 1.7 years). Results 2078 deaths incurred. With NPH as reference, the adjusted HRs for all-cause mortality were 0.39 (95% CI, 0.30-0.50) for detemir, and 0.55 (95% CI, 0.44-0.69) for glargine. As compared to glargine, the HR was 0.71 (95% CI, 0.54-0.93) among detemir users. Compared to NPH, the mortality risk for both cardiovascular causes as well as cancer were also significantly lower for glargine, and especially for detemir in adjusted analysis. Furthermore, the results were robust in various sensitivity analyses. Conclusion In real clinical practice, mortality was substantially higher among users of NPH insulin as compared to insulins detemir or glargine. Considering the large number of patients who require insulin therapy, this difference in risk may have major clinical and public health implications. Due to limitations of the observational study design, further investigation using an interventional study design is warranted.Peer reviewe

TESS Photometry of AM Her and AR UMa: Binary Parameters, Cyclotron Emission Modeling, and Mass Transfer Duty Cycles

Transiting Exoplanet Survey Satellite (TESS) photometry of the polars AM Herculis (AM Her) and AR Ursae Majoris (AR UMa) is presented, along with high-speed photometry. AM Her shows a variety of high states with frequent transitions between them. TESS photometry of AR UMa in the low state reveals no evidence of accretion, while the McDonald 2.1 m telescope caught AR UMa in its high accretion state. Roche-lobe overflow is shut off during low states of AR UMa, while accretion often still takes place during low states of AM Her. We derive inclinations of 50° and 70° for AM Her and AR UMa respectively. To model the high-state light curves of AM Her, we employ a self-organized map light-curve classification scheme to establish common accretion configurations. The cyclotron radiation properties then allow the production of emission region maps on the surface of the white dwarf. The accretion geometry of AM Her is most consistent with a multipolar field structure. The high-state photometry of AR UMa has stochastic accretion flaring, which we attribute to magnetically buffeted mass transfer through the inner Lagrangian point L1. To consider this possibility, we examine the magnetism of both stars and argue that the local magnetic field near L1 can initiate short-lived accretion events and affect transitions between high and low accretion states in both AM Her and AR UMa. In particular, AR UMa has the low state as its default, while AM Her and most other active polars are in the high state by default

Limitations of estimating branch volume from terrestrial laser scanning

Quantitative structural models (QSMs) are frequently used to simplify single tree point clouds obtained by terrestrial laser scanning (TLS). QSMs use geometric primitives to derive topological and volumetric information about trees. Previous studies have shown a high agreement between TLS and QSM total volume estimates alongside field measured data for whole trees. Although already broadly applied, the uncertainties of the combination of TLS and QSM modelling are still largely unexplored. In our study, we investigated the effect of scanning distance on length and volume estimates of branches when deriving QSMs from TLS data. We scanned ten European beech (Fagus sylvatica L.) branches with an average length of 2.6 m. The branches were scanned from distances ranging from 5 to 45 m at step intervals of 5 m from three scan positions each. Twelve close-range scans were performed as a benchmark. For each distance and branch, QSMs were derived. We found that with increasing distance, the point cloud density and the cumulative length of the reconstructed branches decreased, whereas individual volumes increased. Dependent on the QSM hyperparameters, at a scanning distance of 45 m, cumulative branch length was on average underestimated by − 75%, while branch volume was overestimated by up to + 539%. We assume that the high deviations are related to point cloud quality. As the scanning distance increases, the size of the individual laser footprints and the distances between them increase, making it more difficult to fully capture small branches and to adjust suitable QSMs.Peer reviewe

Unprecedented reorganization of holocentric chromosomes provides insights into the enigma of lepidopteran chromosome evolution

Chromosome evolution presents an enigma in the mega-diverse Lepidoptera. Most species exhibit constrained chromosome evolution with nearly identical haploid chromosome counts and chromosome-level gene collinearity among species more than 140 million years divergent. However, a few species possess radically inflated chromosomal counts due to extensive fission and fusion events. To address this enigma of constraint in the face of an exceptional ability to change, we investigated an unprecedented reorganization of the standard lepidopteran chromosome structure in the green-veined white butterfly (Pieris napi). We find that gene content in P. napi has been extensively rearranged in large collinear blocks, which until now have been masked by a haploid chromosome number close to the lepidopteran average. We observe that ancient chromosome ends have been maintained and collinear blocks are enriched for functionally related genes suggesting both a mechanism and a possible role for selection in determining the boundaries of these genome-wide rearrangements.Peer reviewe