The nature of vegetation science

Fil: Partel, Meelis. University of Tartu. Institute of Ecology and Earth Sciences; EstoniaFil: Chiarucci, Alessandro. University of Siena. Department of Environmental Science ‘‘G. Sarfatti’’. BIOCONNET, Biodiversity and Conservation Network; ItaliaFil: Diaz, Sandra Myrna. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Córdoba. Instituto Multidisciplinario de Biología Vegetal (p); Argentina; Argentina. Universidad Nacional de Córdoba; ArgentinaFil: Wilson, J. Bastow. University of Otago. Botany Department ; Nueva Zeland

Structure and function of the soil microbiome underlying N2O emissions from global wetlands

Wetland soils are the greatest source of nitrous oxide (N2O), a critical greenhouse gas and ozone depleter released by microbes. Yet, microbial players and processes underlying the N2O emissions from wetland soils are poorly understood. Using in situ N2O measurements and by determining the structure and potential functional of microbial communities in 645 wetland soil samples globally, we examined the potential role of archaea, bacteria, and fungi in nitrogen (N) cycling and N2O emissions. We show that N2O emissions are higher in drained and warm wetland soils, and are correlated with functional diversity of microbes. We further provide evidence that despite their much lower abundance compared to bacteria, nitrifying archaeal abundance is a key factor explaining N2O emissions from wetland soils globally. Our data suggest that ongoing global warming and intensifying environmental change may boost archaeal nitrifiers, collectively transforming wetland soils to a greater source of N2O.The wetland soil microbiome has a major impact on greenhouse gas emissions. Here the authors characterize how a group of archaea contribute to N2O emissions and find that climate and land use changes could promote these organisms

Erosion of global functional diversity across the tree of life

Although one-quarter of plant and vertebrate species are threatened with extinction, little is known about the potential effect of extinctions on the global diversity of ecological strategies. Using trait and phylogenetic information for more than 75,000 species of vascular plants, mammals, birds, reptiles, amphibians, and freshwater fish, we characterized the global functional spectra of each of these groups. Mapping extinction risk within these spectra showed that larger species with slower pace of life are universally threatened. Simulated extinction scenarios exposed extensive internal reorganizations in the global functional spectra, which were larger than expected by chance for all groups, and particularly severe for mammals and amphibians. Considering the disproportionate importance of the largest species for ecological processes, our results emphasize the importance of actions to prevent the extinction of the megabiota

Global maps of soil temperature

Research in global change ecology relies heavily on global climatic grids derived from estimates of air temperature in open areas at around 2 m above the ground. These climatic grids do not reflect conditions below vegetation canopies and near the ground surface, where critical ecosystem functions occur and most terrestrial species reside. Here, we provide global maps of soil temperature and bioclimatic variables at a 1-km² resolution for 0–5 and 5–15 cm soil depth. These maps were created by calculating the difference (i.e., offset) between in-situ soil temperature measurements, based on time series from over 1200 1-km² pixels (summarized from 8500 unique temperature sensors) across all the world’s major terrestrial biomes, and coarse-grained air temperature estimates from ERA5-Land (an atmospheric reanalysis by the European Centre for Medium-Range Weather Forecasts). We show that mean annual soil temperature differs markedly from the corresponding gridded air temperature, by up to 10°C (mean = 3.0 ± 2.1°C), with substantial variation across biomes and seasons. Over the year, soils in cold and/or dry biomes are substantially warmer (+3.6 ± 2.3°C) than gridded air temperature, whereas soils in warm and humid environments are on average slightly cooler (-0.7 ± 2.3°C). The observed substantial and biome-specific offsets emphasize that the projected impacts of climate and climate change on near-surface biodiversity and ecosystem functioning are inaccurately assessed when air rather than soil temperature is used, especially in cold environments. The global soil-related bioclimatic variables provided here are an important step forward for any application in ecology and related disciplines. Nevertheless, we highlight the need to fill remaining geographic gaps by collecting more in-situ measurements of microclimate conditions to further enhance the spatiotemporal resolution of global soil temperature products for ecological applications

Global maps of soil temperature.

Research in global change ecology relies heavily on global climatic grids derived from estimates of air temperature in open areas at around 2 m above the ground. These climatic grids do not reflect conditions below vegetation canopies and near the ground surface, where critical ecosystem functions occur and most terrestrial species reside. Here, we provide global maps of soil temperature and bioclimatic variables at a 1-km2 resolution for 0-5 and 5-15 cm soil depth. These maps were created by calculating the difference (i.e. offset) between in situ soil temperature measurements, based on time series from over 1200 1-km2 pixels (summarized from 8519 unique temperature sensors) across all the world's major terrestrial biomes, and coarse-grained air temperature estimates from ERA5-Land (an atmospheric reanalysis by the European Centre for Medium-Range Weather Forecasts). We show that mean annual soil temperature differs markedly from the corresponding gridded air temperature, by up to 10°C (mean = 3.0 ± 2.1°C), with substantial variation across biomes and seasons. Over the year, soils in cold and/or dry biomes are substantially warmer (+3.6 ± 2.3°C) than gridded air temperature, whereas soils in warm and humid environments are on average slightly cooler (-0.7 ± 2.3°C). The observed substantial and biome-specific offsets emphasize that the projected impacts of climate and climate change on near-surface biodiversity and ecosystem functioning are inaccurately assessed when air rather than soil temperature is used, especially in cold environments. The global soil-related bioclimatic variables provided here are an important step forward for any application in ecology and related disciplines. Nevertheless, we highlight the need to fill remaining geographic gaps by collecting more in situ measurements of microclimate conditions to further enhance the spatiotemporal resolution of global soil temperature products for ecological applications

Community completeness as a measure of restoration success: multiple-study comparisons across ecosystems and ecological groups

When restoring habitat for biodiversity, the most effective outcome will be achieved by restoration projects which target several organism groups or ecosystem types. Such integrated approaches require direct comparisons among different ecological communities while evaluating success of restoration. The Community Completeness Index (CCI) is a recently developed metric that allows such comparisons by accounting for both present and absent but otherwise suitable taxa. We empirically evaluated the applicability of CCI for assessing the outcome of ecological restoration. We analyzed how species richness and the completeness of ecological communities recover after restoration, for different ecological groups and ecosystem types, and how it develops over time after restoration. Analyses were performed on 18 datasets with per site presence-absence data from Northern Europe. Each dataset represented one of the three habitat types (mire, forest, grassland) and different ecological groups (plants, flying insects, epigeic invertebrates). Datasets contained pristine, degraded and restored sites. We calculated the dark diversity and subsequently CCI based on species co-occurrences. Our multiple-study analyses revealed that CCI of grassland plant communities increased faster after restoration than invertebrate communities or plant communities in forests and mires. In addition, flying insect communities demonstrated significantly highest CCI in pristine mires. Some results were significant only for richness but not for CCI indicating species pool effect. Finally, completeness and species richness of restored communities increased with time since restoration. As such, our study demonstrated that CCI is a useful tool in evaluating restoration success across different organism groups and ecosystem types

Diversity of lichens and bryophytes in hybrid aspen plantations in Estonia depends on landscape structure

Importance of single-species forest plantations in sustaining biodiversity could be bigger than expected. We described the diversity of lichens and bryophytes in 15 midterm (16â 17-year-old) hybrid aspen (Populus tremula Ă P. tremuloides) plantations in Estonia. Species richness and composition data were linked with environmental and landscape-scale variables. Altogether, 44 lichen and 37 bryophyte species were recorded from plantations; richnesses of bryophytes and lichens were positively correlated. Lichen species composition was significantly affected by landscape-scale parameters (distance to the nearest present forest, distance to the nearest forest continuously occurring in the same place since 1930s, and forest area in the study plot vicinity in 1930s). Bryophyte species composition was affected mainly by light conditions and forest area in 1930s. Among lichens, functional group of sexual crustose species dominated in midterm plantations; appearance of asexual lichens of different growth forms is expected during next years. Our results indicate importance of long-term availability of good-quality forests as sources of propagules. Short-rotation hybrid aspen plantations can provide temporary habitats for forest species and thus in part contribute to preserving landscape-scale biodiversity, if they are close to possible colonisation sources. Green-tree retension in plantations will probably raise the biodiversity value of those short-term communities.The accepted manuscript in pdf format is listed with the files at the bottom of this page. The presentation of the authors' names and (or) special characters in the title of the manuscript may differ slightly between what is listed on this page and what is listed in the pdf file of the accepted manuscript; that in the pdf file of the accepted manuscript is what was submitted by the author

Seventy-year history of management using low-intensity harvesting methods: weak impact on biodiversity of hemiboreal Scots pine forests

Less intensive harvesting methods (e.g., selection cutting, shelterwood cuttings) are recommended as alternatives to clearcutting for maintaining mature forest biodiversity in the process of forest regeneration. However, the long-term impact of low-intensity harvesting methods has rarely been studied. Our aim was to clarify the long-term effects of repeated selective cutting, thinning, and shelterwood cutting on the richness, abundance, and species composition of vascular plants, bryophytes, and lichens in Scots pine forests (Pinus sylvestris L.). Data were collected from 25 mature stands located in dry Podzols in southwestern Estonia with a known management history for the last 70 years. Altogether, 35 vascular plant, 41 bryophyte, and 78 lichen species were recorded, including five species with conservational value. Generally, the management history was not related to species richness, except a negative correlation with the species number of epiphytic lichens on conifer trees. In addition, the abundance of two lichen species from the genus Chaenotheca was lower in more frequently managed stands. Species richness and composition were most strongly affected by soil pH and light conditions. We conclude that long-term, low-intensity harvesting of Scots pine forests on nutrient-poor Podzols maintains suitable habitats for vascular plants, bryophytes, and lichens, confirming its suitability for sustainable forest regeneration.The accepted manuscript in pdf format is listed with the files at the bottom of this page. The presentation of the authors' names and (or) special characters in the title of the manuscript may differ slightly between what is listed on this page and what is listed in the pdf file of the accepted manuscript; that in the pdf file of the accepted manuscript is what was submitted by the author