A Large Catalog of Homogeneous Ultra-Violet/Optical GRB Afterglows: Temporal and Spectral Evolution

We present the second Swift Ultra-Violet/Optical Telescope (UVOT) gamma-ray burst (GRB) afterglow catalog, greatly expanding on the first Swift UVOT GRB afterglow catalog. The second catalog is constructed from a database containing over 120,000 independent UVOT observations of 538 GRBs first detected by Swift, the High Energy Transient Explorer 2 (HETE2), the INTErnational Gamma-Ray Astrophysics Laboratory (INTEGRAL), the Interplanetary Network (IPN), Fermi, and Astro-rivelatore Gamma a Immagini Leggero (AGILE). The catalog covers GRBs discovered from 2005 Jan 17 to 2010 Dec 25. Using photometric information in three UV bands, three optical bands, and a `white' or open filter, the data are optimally co-added to maximize the number of detections and normalized to one band to provide a detailed light curve. The catalog provides positional, temporal, and photometric information for each burst, as well as Swift Burst Alert Telescope (BAT) and X-Ray Telescope (XRT) GRB parameters. Temporal slopes are provided for each UVOT filter. The temporal slope per filter of almost half the GRBs are fit with a single power-law, but one to three breaks are required in the remaining bursts. Morphological comparisons with the X-ray reveal that approximately 75% of the UVOT light curves are similar to one of the four morphologies identified by Evans et al. (2009). The remaining approximately 25% have a newly identified morphology. For many bursts, redshift and extinction corrected UV/optical spectral slopes are also provided at 2000, 20,000, and 200,000 seconds.Comment: 44 pages, 14 figures, to be published in Astrophysical Journal Supplementa

Phylogenetic Analysis of Seven WRKY Genes across the Palm Subtribe Attaleinae (Arecaceae) Identifies Syagrus as Sister Group of the Coconut

BACKGROUND:The Cocoseae is one of 13 tribes of Arecaceae subfam. Arecoideae, and contains a number of palms with significant economic importance, including the monotypic and pantropical Cocos nucifera L., the coconut, the origins of which have been one of the "abominable mysteries" of palm systematics for decades. Previous studies with predominantly plastid genes weakly supported American ancestry for the coconut but ambiguous sister relationships. In this paper, we use multiple single copy nuclear loci to address the phylogeny of the Cocoseae subtribe Attaleinae, and resolve the closest extant relative of the coconut. METHODOLOGY/PRINCIPAL FINDINGS:We present the results of combined analysis of DNA sequences of seven WRKY transcription factor loci across 72 samples of Arecaceae tribe Cocoseae subtribe Attaleinae, representing all genera classified within the subtribe, and three outgroup taxa with maximum parsimony, maximum likelihood, and Bayesian approaches, producing highly congruent and well-resolved trees that robustly identify the genus Syagrus as sister to Cocos and resolve novel and well-supported relationships among the other genera of the Attaleinae. We also address incongruence among the gene trees with gene tree reconciliation analysis, and assign estimated ages to the nodes of our tree. CONCLUSIONS/SIGNIFICANCE:This study represents the as yet most extensive phylogenetic analyses of Cocoseae subtribe Attaleinae. We present a well-resolved and supported phylogeny of the subtribe that robustly indicates a sister relationship between Cocos and Syagrus. This is not only of biogeographic interest, but will also open fruitful avenues of inquiry regarding evolution of functional genes useful for crop improvement. Establishment of two major clades of American Attaleinae occurred in the Oligocene (ca. 37 MYBP) in Eastern Brazil. The divergence of Cocos from Syagrus is estimated at 35 MYBP. The biogeographic and morphological congruence that we see for clades resolved in the Attaleinae suggests that WRKY loci are informative markers for investigating the phylogenetic relationships of the palm family

Denial of long-term issues with agriculture on tropical peatlands will have devastating consequences

Non peer reviewe

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency–Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research

Off-plane x-ray grating spectrometer camera for IXO

The International X-ray Observatory (IXO) is a merger of the former ESA XEUS and NASA Constellation-X missions, with additional collaboration from JAXA, proposed for launch ~2020. IXO will address the leading astrophysical questions in the ‘hot universe’ through its breakthrough capabilities in X-ray spectroscopy. The mission covers the 0.1 to 40 keV energy range, complementing the capabilities of the next generation observatories, such as ALMA, LSST, JWST and 30 meter ground-based telescopes. An X-ray Grating Spectrometer is baselined to provide science in the energy range 0.3-1.0 keV at a spectral resolution of E/ΔE > 3,000 with an effective area greater than 1,000 cm2. This will require an array of soft X-ray enhanced CCDs operating at a modest frame rate to measure the diffracted light in both position and energy. Here we describe the baseline camera for the off-plane XGS instrument using mature CCD technology

SN2014J Swift/UVOT light curves

VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title \u27Swift ultraviolet observations of supernova 2014J in M82: large extinction from interstellar dust.\u27 (bibcode: 2015ApJ...805...74B

SWIFT ULTRAVIOLET OBSERVATIONS OF SUPERNOVA 2014J IN M82: LARGE EXTINCTION FROM INTERSTELLAR DUST

We present optical and ultraviolet (UV) photometry and spectra of the very nearby and highly reddened supernova (SN) 2014J in M82 obtained with the Swift Ultra-Violet/Optical Telescope (UVOT). Comparison of the UVOT grism spectra of SN 2014J with Hubble Space Telescope observations of SN2011fe or UVOT grism spectra of SN 2012fr are consistent with an extinction law with a low value of R-V similar to 1.4. The high reddening causes the detected photon distribution in the broadband UV filters to have a much longer effective wavelength than for an unreddened SN. The light curve evolution is consistent with this shift and does not show a flattening due to photons being scattered back into the line of sight (LOS). The light curve shapes and color evolution are inconsistent with a contribution scattered into the LOS by circumstellar dust. We conclude that most or all of the high reddening must come from interstellar dust. We show that even for a single dust composition, there is not a unique reddening law caused by circumstellar scattering. Rather, when considering scattering from a time-variable source, we confirm earlier studies that the reddening law is a function of the dust geometry, column density, and epoch. We also show how an assumed geometry of dust as a foreground sheet in mixed stellar/dust systems will lead to a higher inferred RV. Rather than assuming the dust around SNe is peculiar, SNe may be useful probes of the interstellar reddening laws in other galaxies

Polycyclic aromatic hydrocarbon emission in powerful high-redshift radio galaxies

International audienceWe present the mid-infrared (IR) spectra of seven of the most powerful radio-galaxies known to exist at 1.5 27.8-1029.1 W Hz-1. The AGN signature is clearly evident in the mid-IR spectra; however, we also detect polycyclic aromatic hydrocarbon emission, indicative of prodigious star formation at a rate of up to &tilde;1000 M&sun; yr-1. Interestingly, we observe no significant correlation between AGN power and star formation in the host galaxy. We also find most of these radio galaxies to have weak 9.7 mum silicate absorption features (tau9.7 mum < 0.8) which implies that their mid-IR obscuration is predominantly due to the dusty torus that surrounds the central engine, rather than the host galaxy. The tori are likely to have an inhomogeneous distribution with the obscuring structure consisting of individual clouds. We estimate that these radio galaxies have already formed the bulk of their stellar mass and appear to lie at a stage in their evolution where the obscured AGN dominates the energy output of the system but star formation is also prevalent