Alteración diagenética y preservación diferencial de los conjuntos óseos de la localidad arqueológica Paso Otero (provincia de Buenos Aires, Argentina)

The main goal of this paper is to provide a taphonomic analysis related to the process of physical and chemical alteration of the bone structure caused by post-burial processes or diagenesis. Particularly, this research focuses on four archaeological assemblages from the Paso Otero archaeological locality (Buenos Aires Province, Argentina). The study of diagenetic parameters such as porosity, crystallinity (IRSF), diagenetic carbonate content (C/P), calcite, protein content (%N) and histology were applied to bone assemblages of archaeological sites recorded in «A» buried soil horizons located in ancient flood plains in the middle basin of the Quequén Grande River. The chronological span includes the late Pleistocene and the beginning of the late Holocene. The analysis of bone microstructure indicates a pattero of differential bone preservation even when the archaeological assemblages come from quite similar environmental depositional settings. Consequently, it is remarkable that every site has undergone a very particular taphonomic history regarding post-burial processes. The possible causes of theses differences are explored and discussed.El objetivo de este trabajo es el de determinar el grado de alteración diagenética de cuatro conjuntos óseos provenientes de tres sitios de la localidad arqueológica Paso Otero, ubicada en la cuenca media del río Quequén Grande (Provincia de Buenos Aires, Argentina). Los sitios analizados tienen una cronología comprendida entre el límite Pleistoceno/Holoceno y los inicios del Holoceno tardío. Específicamente, se caracteriza el grado de modificación post-depositacional de cada uno de los conjuntos de acuerdo a la aplicación de parámetros diagenéticos que incluyen porosidad, cristalinidad (IRSF), presencia de carbonatos diagenéticos (C/P), integridad histológica, contenido total de proteína (%N) y calcita. Los resultados alcanzados indican que, a pesar de la similitud de los ambientes de depositación en los que fueron recuperados los conjuntos óseos (horizontes «A» de suelos enterrados en antiguas planicies de inundación), existe un patrón de preservación diferencial que se expresa, básicamente, en la macroporosidad y el %N. No obstante, existe una tendencia general cuando se considera el total de parámetros empleados ya que las diferencias se registran en la intensidad con la que actuaron ciertos procesos y no en la presencia de los mismos. Finalmente, se discuten las causas que provocarían las diferencias en los estados de preservación y se analizan qué variables (por ej. temperatura, humedad, acción de microorganismos, tiempo, tamaño de la muestra, porosidad de los huesos, etc.) ocuparían un lugar preponderante en la explicación de los resultados alcanzados

Polymorph selectivity of coccolith-associated polysaccharides from Gephyrocapsa oceanica on calcium carbonate formation in vitro

Coccolith-associated polysaccharides (CAPs) are thought to be a key part of the biomineralization process in coccolithophores, however their role is not fully understood. We have used two different systems that promote different polymorphs of calcium carbonate to show the effect of CAPs on nucleation and polymorph selection in vitro. Using a combination of time-resolved cryo-transmission electron microscopy (cryoTEM) and scanning electron microscopy (SEM), we examined the mechanisms of calcite nucleation and growth in the presence of the intracrystalline fraction containing CAPs extracted from coccoliths from Gephyrocapsa oceanica and Emiliania huxleyi, two closely related coccolithophore species. The CAPs extracted from G. oceanica were shown to promote calcite nucleation in vitro, even under conditions favouring the kinetic products of calcium carbonate, vaterite and aragonite. This was not the case with CAPs extracted from E. huxleyi, suggesting that the functional role of CAPs in vivo may be different between the two species. Additionally, high-resolution synchrotron powder X-ray diffraction (SXPD) revealed that the polysaccharide is located between grain boundaries of both calcite produced in the presence of the CAPs in vitro and biogenic calcite, rather than within the crystal lattice

An overview of the CellML API and its implementation

<p>Abstract</p> <p>Background</p> <p>CellML is an XML based language for representing mathematical models, in a machine-independent form which is suitable for their exchange between different authors, and for archival in a model repository. Allowing for the exchange and archival of models in a computer readable form is a key strategic goal in bioinformatics, because of the associated improvements in scientific record accuracy, the faster iterative process of scientific development, and the ability to combine models into large integrative models.</p> <p>However, for CellML models to be useful, tools which can process them correctly are needed. Due to some of the more complex features present in CellML models, such as imports, developing code <it>ab initio </it>to correctly process models can be an onerous task. For this reason, there is a clear and pressing need for an application programming interface (API), and a good implementation of that API, upon which tools can base their support for CellML.</p> <p>Results</p> <p>We developed an API which allows the information in CellML models to be retrieved and/or modified. We also developed a series of optional extension APIs, for tasks such as simplifying the handling of connections between variables, dealing with physical units, validating models, and translating models into different procedural languages.</p> <p>We have also provided a Free/Open Source implementation of this application programming interface, optimised to achieve good performance.</p> <p>Conclusions</p> <p>Tools have been developed using the API which are mature enough for widespread use. The API has the potential to accelerate the development of additional tools capable of processing CellML, and ultimately lead to an increased level of sharing of mathematical model descriptions.</p

Wave-formed sediment ripples: Transient analysis of ripple spectral development

A new method has been developed that models the changes a wave-formed rippled sediment bed undergoes as it is actively evolving between two given equilibrium states due to a change in surface wave conditions. The transient analysis of rippled beds has received very little attention within the literature. Dynamic changes within ripple parameters have implications for the estimation of flow dissipation and sediment transport by changing the bottom roughness height. The method uses the spectral density function of the rippled bed and is based on a series of ripple growth and ripple transition experimental tests. The ripple evolution model was developed from the well-known Logistic Growth Law. Fitting the general solution of the logistic nonlinear differential equation to the experimental data enabled the evolution rate of the bed to be determined for each experimental test. It was concluded that there was no difference between the evolution rate determined from the ripple growth tests and the ripple transition tests. This indicated that the two types of growth are special cases of the same evolution processes, which is adequately modeled by the logistic growth equation. A functional dependence was established between the ripple evolution rate and the Shields parameter. This allows the evolution rate to be estimated from flow and sediment properties. The estimation of the rate at which rippled sediment beds evolve under a variable sea state has the potential to lead to significant improvements to the way ripple transition and hence bottom roughness is approximated in coastal wave models.Joseph P. Davis, David J. Walker, Murray Townsend, Ian R. Youn

Membrane-Protein Interactions in a Generic Coarse-Grained Model for Lipid Bilayers

We study membrane-protein interactions and membrane-mediated protein-protein interactions by Monte Carlo simulations of a generic coarse-grained model for lipid bilayers with cylindrical hydrophobic inclusions. The strength of the hydrophobic force and the hydrophobic thickness of the proteins are systematically varied. The results are compared with analytical predictions of two popular analytical theories: The Landau-de Gennes theory and the elastic theory. The elastic theory provides an excellent description of the fluctuation spectra of pure membranes and successfully reproduces the deformation profiles of membranes around single proteins. However, its prediction for the potential of mean force between proteins is not compatible with the simulation data for large distances. The simulations show that the lipid-mediated interactions are governed by five competing factors: Direct interactions, lipid-induced depletion interactions, lipid bridging, lipid packing, and a smooth long-range contribution. The mechanisms leading to "hydrophobic mismatch" interactions are critically analyzed.Comment: 16 pages, 8 figures, accepted for publication in Biophysical Journa

Thermochemistry of Alane Complexes for Hydrogen Storage: A Theoretical and Experimental Comparison

Knowledge of the relative stabilities of alane (AlH3) complexes with electron donors is essential for identifying hydrogen storage materials for vehicular applications that can be regenerated by off-board methods; however, almost no thermodynamic data are available to make this assessment. To fill this gap, we employed the G4(MP2) method to determine heats of formation, entropies, and Gibbs free energies of formation for thirty-eight alane complexes with NH3-nRn (R = Me, Et; n = 0-3), pyridine, pyrazine, triethylenediamine (TEDA), quinuclidine, OH2-nRn (R = Me, Et; n = 0-2), dioxane, and tetrahydrofuran (THF). Monomer, bis, and selected dimer complex geometries were considered. Using these data, we computed the thermodynamics of the key formation and dehydrogenation reactions that would occur during hydrogen delivery and alane regeneration, from which trends in complex stability were identified. These predictions were tested by synthesizing six amine-alane complexes involving trimethylamine, triethylamine, dimethylethylamine, TEDA, quinuclidine, and hexamine, and obtaining upper limits of delta G for their formation from metallic aluminum. Combining these computational and experimental results, we establish a criterion for complex stability relevant to hydrogen storage that can be used to assess potential ligands prior to attempting synthesis of the alane complex. Based on this, we conclude that only a subset of the tertiary amine complexes considered and none of the ether complexes can be successfully formed by direct reaction with aluminum and regenerated in an alane-based hydrogen storage system.Comment: Accepted by the Journal of Physical Chemistry

Non-suicidal self-injury in adolescence: a longitudinal study of the relationship between NSSI, psychological distress and perceived parenting

Objective: The present study investigates whether either adolescents' psychological distress and/or perceived parenting predicted the occurrence of NSSI. Furthermore, the consequences of NSSI are examined in a three-wave longitudinal study. Design: The sample at time 1 (age 12) consisted of 1396 adolescent reports and 1438 parent reports. At time 2 (age 13), 827 adolescent reports and 936 parent reports were obtained. Time 3 (age 14) included 754 adolescent reports and 790 parent reports. Psychological distress of adolescents was measured using the Strengths and Difficulties Questionnaire. Perceived parenting behaviors were examined by the Parental Behavior Scale and the Psychological Control Scale. Results: A total of 10% of the adolescents engaged in NSSI at least once before age 15. Higher psychological distress of adolescents at time 1 was associated with the presence of NSSI at time 2 or 3. The association between psychological distress at time 1 and perception of decreased parental rule setting at time 3 was mediated by the presence of NSSI at time 2. Conclusions: The present study showed that psychological distress at age 12 predicts NSSI over time and that parental awareness of NSSI changes the perception of parenting behaviors. (C) 2014 The Foundation for Professionals in Services for Adolescents. Published by Elsevier Ltd. All rights reserved