Repeatability of traits for characterizing feed intake patterns in dairy goats: a basis for phenotyping in the precision farming context

International audienceIn ruminants, feeding behaviour variables are parameters involved in feed efficiency that show variation among individuals. This study aimed to evaluate during the first two production cycles in ruminants the repeatability of feed intake pattern, which is an important aspect of feeding behaviour. Thirty-five dairy goats from Alpine or Saanen breeds were housed in individual pens at four periods (end of first gestation, middle of first and second lactations and middle of second gestation which is also the end of first lactation) and fed a total mixed ration (TMR) ad libitum. Individual cumulative dry matter intake (DMI) was automatically measured every 2 min during the last 4 days of each period. Feed intake pattern was characterized by several measures related to the quantity of feed eaten or to the rate of intake during the 15 h following the afternoon feed delivery. Two main methods were used: modelling cumulative DMI evolution by an exponential model or by a segmentation-clustering method. The goat ability to sort against dietary fibre was also evaluated. There was a very good repeatability of the aggregate measures between days within a period for a given goat estimated by the day effect within breed and goat, tested on the residual variance (P > 0.95). The correlations between periods were the highest between the second and either the third or fourth periods. With increasing age, goats sorted more against the fibrous part of the TMR and increased their initial rate of intake. Alpine goats ate more slowly than Saanen goats but ate during a longer duration. Principal component analysis (PCA) was performed on all the aggregate measures of feed intake patterns. The factor score plots generated by the PCA highlighted the opposition between the different measures of feed intake patterns and the sorting behaviour. The projection of the animals on the scoring plots showed a breed effect and that there was a continuum for the feed intake pattern of goats. In conclusion, this study showed that the feed intake pattern was highly repeatable for an animal in a given period and between periods. This means that phenotyping goats in a younger age might be of interest, either to select them on feeding behaviour and choose preferentially the slow eaters or to adapt the quantity offered and restrict feed delivery to the fast eaters in order to increase feed efficiency and welfare by limiting the occurrence of acidosis, for example

SOOP Network Enhancement Report

Report on the network enhancement project, this will document (a) extension of network coverage to South Atlantic; (b) evaluation of improved EOV carbonate system; and (c) re-assessment of instrumentatio

Ocean circulation causes the largest freshening event for 120 years in eastern subpolar North Atlantic

The Atlantic Ocean overturning circulation is important to the climate system because it carries heat and carbon northward, and from the surface to the deep ocean. The high salinity of the subpolar North Atlantic is a prerequisite for overturning circulation, and strong freshening could herald a slowdown. We show that the eastern subpolar North Atlantic underwent extreme freshening during 2012 to 2016, with a magnitude never seen before in 120 years of measurements. The cause was unusual winter wind patterns driving major changes in ocean circulation, including slowing of the North Atlantic Current and diversion of Arctic freshwater from the western boundary into the eastern basins. We find that wind-driven routing of Arctic-origin freshwater intimately links conditions on the North West Atlantic shelf and slope region with the eastern subpolar basins. This reveals the importance of atmospheric forcing of intra-basin circulation in determining the salinity of the subpolar North Atlantic

Theoretical and experimental activities on opacities for a good interpretation of seismic stellar probes

Opacity calculations are basic ingredients of stellar modelling. They play a crucial role in the interpretation of acoustic modes detected by SoHO, COROT and KEPLER. In this review we present our activities on both theoretical and experimental sides. We show new calculations of opacity spectra and comparisons between eight groups who produce opacity spectra calculations in the domain where experiments are scheduled. Real differences are noticed with real astrophysical consequences when one extends helioseismology to cluster studies of different compositions. Two cases are considered presently: (1) the solar radiative zone and (2) the beta Cephei envelops. We describe how our experiments are performed and new preliminary results on nickel obtained in the campaign 2010 at LULI 2000 at Polytechnique.Comment: 6 pages, 4 figures, invited talk at SOHO2

When diving animals help us to observe the oceans: the MEOP data portal

Seals help gather information on some of the harshest environments on the planet, through the use of miniaturized ocean sensors glued on their fur. The resulting data – gathered from remote, icy seas over the last decade – are now freely available to scientists around the world from the data portal http://www.meop.net. The Polar oceans are changing rapidly as a result of global warming. Ice caps in Antarctica and Greenland are melting, releasing large quantities of freshwater into surface waters. The winter sea ice cover is receding in the Arctic and in large areas of the Southern Ocean, which promotes further warming. Southern winds are intensifying for reasons that are not fully understood. To understand the changing marine environment, it is necessary to have a comprehensive network of oceanographic measurements. Yet, until recently, the harsh climate and remoteness of these areas make them extremely difficult to observe. Diving marine animals equipped with sensors are now increasingly filling in the gaps. When diving animals help us to observe the oceans Since 2004, hundreds of diving marine animals, mainly Antarctic and Arctic seals, were fitted with a new generation of Argos tags developed by the Sea Mammal Research Unit of the University of St. Andrews in Scotland (Fig. 1). These tags can be used to investigate simultaneously the at-sea ecology (displacement, behaviour, dives, foraging success...) of these animals while collecting valuable oceanographic data (Boehme et al. 2009). Some of these species are travelling thousands of kilometres continuously diving to great depths (590 ± 200 m, with maxima around 2000m). The overall objective of most marine animal studies is to assess how their foraging behavior responds to oceanographic changes and how it affects their ability to aquire the resources they need to survive. But in the last decade, these animals have become an essential source of temperature and salinity profiles, especially for the polar oceans. For example, elephant seals and Weddell seals have contributed 98 % of the existing temperature and salinity profiles within the Southern Ocean pack ice. The sensors are non-invasive (attached to the animal’s fur, they naturally fall off when the animal moults) and the only devices of their kind that can be attached to animals. MEOP: an international data portal for ocean data collected by marine animals The international consortium MEOP (Marine mammals Exploring the Ocean Pole-to-pole), originally formed during the International Polar Year in 2008-2009, aims to coordinate at the global scale animal tag deployments, oceanographic data processing and data distribution. The MEOP consortium includes participants from 12 countries (Australia, Brazil, Canada, China, United Kingdom, United States, France, Germany, Greenland, Norway, South Africa and Sweden). The MEOP consortium is associated with GOOS (Global Ocean Observing System), POGO (Partnership for Observation of the Global Oceans), and SOOS (Southern Ocean Observing System). At the European level, the European Animal-Borne Instrument (ABI) EuroGOOS Task Team is about to be launched to facilitate and promote the use of animal-borne instruments. Over 300,000 oceanographic profiles (i.e. representing 1/3 of the total number of Argo profiles) collected by marine biologists have already been made freely available to the international community through the MEOP data portal (Fig. 2). This so-called MEOP-CTD database is a significant contribution to the observation of the world ocean that can be used to conduct regional Polar studies. The MEOP-CTD database of animal-derived temperature and salinity profiles An increasing number of studies now show the importance of these remote and inaccessible parts of the ocean, which are so difficult to observe. For example, more than 90% of extra heat in the Earth system is now stored in the oceans and the Southern Ocean in particular is a key site for understanding the uptake of heat and carbon. MEOP provides several thousand oceanographic profiles per year helping us to close gaps in our understanding of the climate system. Instrumented animals complement efficiently other existing observing systems, such as Argo buoys, providing data in sea-ice covered areas and on high-latitude continental shelves. Recent published work (Roquet et al. 2013; Roquet et al. 2014) has shown how important such observations are in predicting ice cover and mixed layer depth in large parts of the oceans where the observations were made. The inclusion of these data should improve significantly the quality of the projections provided by ocean-climate models. All these data are now available into a format file (Argo standard format) easily usable by oceanographers and accessible via the MEOP portal where it can be freely and easily downloaded by users (national data centers, researchers...) with a guaranteed quality level. This database is updated on an annual basis, and it has already been integrated into major oceanographic data centres including NODC, BODC and Coriolis. Figures Figure 1: Weddell seal carrying a SRDL-CTD instrument that collects temperature and salinity profiles while the animal is at sea (Credits: D. Costa). Figure 2: Distribution of hydrographic data in the MEOPCTD database for the Southern Ocean sector (source: meop.net). References Boehme, L. et al., 2009. Technical Note: Animal-borne CTD-Satellite Relay Data Loggers for real-time oceanographic data collection. Ocean Science, 5:685-695. Roquet F. et al., 2013. Estimates of the Southern Ocean General Circulation Improved by Animal-Borne Instruments. Geoph. Res. Letts., 40:1-5. doi: 10.1002/2013GL058304 Roquet F. et al., 2014. A Southern Indian Ocean database of hydrographic profiles obtained with instrumented elephant seals. Nature Scientific Data, 1:140028, doi: 10.1038/sdata.2014.2

Multidecadal accumulation of anthropogenic and remineralized dissolved inorganic carbon along the Extended Ellett Line in the northeast Atlantic Ocean

Marine carbonate chemistry measurements have been carried out annually since 2009 during UK research cruises along the Extended Ellett Line (EEL), a hydrographic transect in the northeast Atlantic Ocean. The EEL intersects several water masses that are key to the global thermohaline circulation, and therefore the cruises sample a region in which it is critical to monitor secular physical and biogeochemical changes. We have combined results from these EEL cruises with existing quality-controlled observational data syntheses to produce a hydrographic time series for the EEL from 1981 to 2013. This reveals multidecadal increases in dissolved inorganic carbon (DIC) throughout the water column, with a near-surface maximum rate of 1.80 ± 0.45 µmol kg−1 yr−1. Anthropogenic CO2 accumulation was assessed, using simultaneous changes in apparent oxygen utilization (AOU) and total alkalinity (TA) as proxies for the biogeochemical processes that influence DIC. The stable carbon isotope composition of DIC (δ13CDIC) was also determined and used as an independent test of our method. We calculated a volume-integrated anthropogenic CO2 accumulation rate of 2.8 ± 0.4 mg C m−3 yr−1 along the EEL, which is about double the global mean. The anthropogenic CO2 component accounts for only 31 ± 6% of the total DIC increase. The remainder is derived from increased organic matter remineralization, which we attribute to the lateral redistribution of water masses that accompanies subpolar gyre contraction. Output from a general circulation ecosystem model demonstrates that spatiotemporal heterogeneity in the observations has not significantly biased our multidecadal rate of change calculations and indicates that the EEL observations have been tracking distal changes in the surrounding North Atlantic and Nordic Seas

A well-kept treasure at depth: precious red coral rediscovered in Atlantic deep coral gardens (SW Portugal) after 300 years

The highly valuable red coral Corallium rubrum is listed in several Mediterranean Conventions for species protection and management since the 1980s. Yet, the lack of data about its Atlantic distribution has hindered its protection there. This culminated in the recent discovery of poaching activities harvesting tens of kg of coral per day from deep rocky reefs off SW Portugal. Red coral was irregularly exploited in Portugal between the 1200s and 1700s, until the fishery collapsed. Its occurrence has not been reported for the last 300 years.info:eu-repo/semantics/publishedVersio

Radiative properties of stellar plasmas and open challenges

The lifetime of solar-like stars, the envelope structure of more massive stars, and stellar acoustic frequencies largely depend on the radiative properties of the stellar plasma. Up to now, these complex quantities have been estimated only theoretically. The development of the powerful tools of helio- and astero- seismology has made it possible to gain insights on the interiors of stars. Consequently, increased emphasis is now placed on knowledge of the monochromatic opacity coefficients. Here we review how these radiative properties play a role, and where they are most important. We then concentrate specifically on the envelopes of $\beta$ Cephei variable stars. We discuss the dispersion of eight different theoretical estimates of the monochromatic opacity spectrum and the challenges we need to face to check these calculations experimentally.Comment: 6 pages, 5 figures, in press (conference HEDLA 2010

Animal-borne telemetry: An integral component of the ocean observing toolkit

Animal telemetry is a powerful tool for observing marine animals and the physical environments that they inhabit, from coastal and continental shelf ecosystems to polar seas and open oceans. Satellite-linked biologgers and networks of acoustic receivers allow animals to be reliably monitored over scales of tens of meters to thousands of kilometers, giving insight into their habitat use, home range size, the phenology of migratory patterns and the biotic and abiotic factors that drive their distributions. Furthermore, physical environmental variables can be collected using animals as autonomous sampling platforms, increasing spatial and temporal coverage of global oceanographic observation systems. The use of animal telemetry, therefore, has the capacity to provide measures from a suite of essential ocean variables (EOVs) for improved monitoring of Earth's oceans. Here we outline the design features of animal telemetry systems, describe current applications and their benefits and challenges, and discuss future directions. We describe new analytical techniques that improve our ability to not only quantify animal movements but to also provide a powerful framework for comparative studies across taxa. We discuss the application of animal telemetry and its capacity to collect biotic and abiotic data, how the data collected can be incorporated into ocean observing systems, and the role these data can play in improved ocean management

EUREC⁴A

The science guiding the EUREC⁴A campaign and its measurements is presented. EUREC⁴A comprised roughly 5 weeks of measurements in the downstream winter trades of the North Atlantic – eastward and southeastward of Barbados. Through its ability to characterize processes operating across a wide range of scales, EUREC⁴A marked a turning point in our ability to observationally study factors influencing clouds in the trades, how they will respond to warming, and their link to other components of the earth system, such as upper-ocean processes or the life cycle of particulate matter. This characterization was made possible by thousands (2500) of sondes distributed to measure circulations on meso- (200 km) and larger (500 km) scales, roughly 400 h of flight time by four heavily instrumented research aircraft; four global-class research vessels; an advanced ground-based cloud observatory; scores of autonomous observing platforms operating in the upper ocean (nearly 10 000 profiles), lower atmosphere (continuous profiling), and along the air–sea interface; a network of water stable isotopologue measurements; targeted tasking of satellite remote sensing; and modeling with a new generation of weather and climate models. In addition to providing an outline of the novel measurements and their composition into a unified and coordinated campaign, the six distinct scientific facets that EUREC⁴A explored – from North Brazil Current rings to turbulence-induced clustering of cloud droplets and its influence on warm-rain formation – are presented along with an overview of EUREC⁴A's outreach activities, environmental impact, and guidelines for scientific practice. Track data for all platforms are standardized and accessible at https://doi.org/10.25326/165 (Stevens, 2021), and a film documenting the campaign is provided as a video supplement