24 research outputs found

    Real-time biomechanical modeling of the liver using Machine Learning models trained on Finite Element Method simulations

    Full text link
    [EN] The development of accurate real-time models of the biomechanical behavior of different organs and tissues still poses a challenge in the field of biomechanical engineering. In the case of the liver, specifically, such a model would constitute a great leap forward in the implementation of complex applications such as surgical simulators, computed-assisted surgery or guided tumor irradiation. In this work, a relatively novel approach for developing such a model is presented. It consists in the use of a machine learning algorithm, which provides real-time inference, trained on tens of thousands of simulations of the biomechanical behavior of the liver carried out by the finite element method on more than 100 different liver geometries. Considering a target accuracy threshold of 3 mm for the Euclidean Error, four different scenarios were modeled and assessed: a single liver with an arbitrary force applied (99.96% of samples within the accepted error range), a single liver with two simultaneous forces applied (99.84% samples in range), a single liver with different material properties and an arbitrary force applied (98.46% samples in range), and a much more general model capable of modeling the behavior of any liver with an arbitrary force applied (99.01% samples in range for the median liver). The results show that the Machine Learning models perform extremely well on all the scenarios, managing to keep the Mean Euclidean Error under 1 mm in all cases. Furthermore, the proposed model achieves working frequencies above 100Hz on modest hardware (with frequencies above 1000Hz being easily achievable on more powerful GPUs) thus fulfilling the real-time requirements. These results constitute a remarkable improvement in this field and may involve a prompt implementation in clinical practice.This work has been funded by the Spanish Ministry of Economy and Competitiveness (MINECO) through research projects TIN2014-52033-R, also supported by European FEDER funds.Pellicer-Valero, OJ.; Rupérez Moreno, MJ.; Martinez-Sanchis, S.; Martín-Guerrero, JD. (2020). Real-time biomechanical modeling of the liver using Machine Learning models trained on Finite Element Method simulations. Expert Systems with Applications. 143:1-12. https://doi.org/10.1016/j.eswa.2019.113083S112143Abadi, M., Barham, P., Chen, J., Chen, Z., Davis, A., Dean, J., Devin, M., Ghemawat, S., Irving, G., Isard, M., Kudlur, M., Levenberg, J., Monga, R., Moore, S., Murray, D. G., Steiner, B., Tucker, P., Vasudevan, V., Warden, P., Wicke, M., Yu, Y., & Zheng, X. (2016). TensorFlow: A system for large-scale machine learning. arXiv:1605.08695.Brunon, A., Bruyère-Garnier, K., & Coret, M. (2010). Mechanical characterization of liver capsule through uniaxial quasi-static tensile tests until failure. Journal of Biomechanics, 43(11), 2221-2227. doi:10.1016/j.jbiomech.2010.03.038Chinesta, F., Leygue, A., Bordeu, F., Aguado, J. V., Cueto, E., Gonzalez, D., … Huerta, A. (2013). PGD-Based Computational Vademecum for Efficient Design, Optimization and Control. Archives of Computational Methods in Engineering, 20(1), 31-59. doi:10.1007/s11831-013-9080-xClifford, M. A., Banovac, F., Levy, E., & Cleary, K. (2002). Assessment of Hepatic Motion Secondary to Respiration for Computer Assisted Interventions. Computer Aided Surgery, 7(5), 291-299. doi:10.3109/10929080209146038Cotin, S., Delingette, H., & Ayache, N. (2000). A hybrid elastic model for real-time cutting, deformations, and force feedback for surgery training and simulation. The Visual Computer, 16(8), 437-452. doi:10.1007/pl00007215Duysak, A., Zhang, J. J., & Ilankovan, V. (2003). Efficient modelling and simulation of soft tissue deformation using mass-spring systems. International Congress Series, 1256, 337-342. doi:10.1016/s0531-5131(03)00423-0Fung, Y. C., & Skalak, R. (1981). Biomechanics: Mechanical Properties of Living Tissues. Journal of Biomechanical Engineering, 103(4), 231-298. doi:10.1115/1.3138285González, D., Aguado, J. V., Cueto, E., Abisset-Chavanne, E., & Chinesta, F. (2016). kPCA-Based Parametric Solutions Within the PGD Framework. Archives of Computational Methods in Engineering, 25(1), 69-86. doi:10.1007/s11831-016-9173-4González, D., Cueto, E., & Chinesta, F. (2015). Computational Patient Avatars for Surgery Planning. Annals of Biomedical Engineering, 44(1), 35-45. doi:10.1007/s10439-015-1362-zJahya, A., Herink, M., & Misra, S. (2013). A framework for predicting three-dimensional prostate deformation in real time. The International Journal of Medical Robotics and Computer Assisted Surgery, 9(4), e52-e60. doi:10.1002/rcs.1493Lister, K., Gao, Z., & Desai, J. P. (2010). Development of In Vivo Constitutive Models for Liver: Application to Surgical Simulation. Annals of Biomedical Engineering, 39(3), 1060-1073. doi:10.1007/s10439-010-0227-8Lorente, D., Martínez-Martínez, F., Rupérez, M. J., Lago, M. A., Martínez-Sober, M., Escandell-Montero, P., … Martín-Guerrero, J. D. (2017). A framework for modelling the biomechanical behaviour of the human liver during breathing in real time using machine learning. Expert Systems with Applications, 71, 342-357. doi:10.1016/j.eswa.2016.11.037Maas, S. A., Ellis, B. J., Ateshian, G. A., & Weiss, J. A. (2012). FEBio: Finite Elements for Biomechanics. Journal of Biomechanical Engineering, 134(1). doi:10.1115/1.4005694Myronenko, A., & Xubo Song. (2010). Point Set Registration: Coherent Point Drift. IEEE Transactions on Pattern Analysis and Machine Intelligence, 32(12), 2262-2275. doi:10.1109/tpami.2010.46Niroomandi, S., Alfaro, I., Cueto, E., & Chinesta, F. (2012). Accounting for large deformations in real-time simulations of soft tissues based on reduced-order models. Computer Methods and Programs in Biomedicine, 105(1), 1-12. doi:10.1016/j.cmpb.2010.06.012Plantefève, R., Peterlik, I., Haouchine, N., & Cotin, S. (2015). Patient-Specific Biomechanical Modeling for Guidance During Minimally-Invasive Hepatic Surgery. Annals of Biomedical Engineering, 44(1), 139-153. doi:10.1007/s10439-015-1419-zLarge elastic deformations of isotropic materials. I. Fundamental concepts. (1948). Philosophical Transactions of the Royal Society of London. Series A, Mathematical and Physical Sciences, 240(822), 459-490. doi:10.1098/rsta.1948.0002Large elastic deformations of isotropic materials IV. further developments of the general theory. (1948). Philosophical Transactions of the Royal Society of London. Series A, Mathematical and Physical Sciences, 241(835), 379-397. doi:10.1098/rsta.1948.0024Ruder, S. (2016). An overview of gradient descent optimization algorithms. (pp. 1–14). arXiv: 1609.04747.Untaroiu, C. D., & Lu, Y.-C. (2013). Material characterization of liver parenchyma using specimen-specific finite element models. Journal of the Mechanical Behavior of Biomedical Materials, 26, 11-22. doi:10.1016/j.jmbbm.2013.05.013Valanis, K. C., & Landel, R. F. (1967). The Strain‐Energy Function of a Hyperelastic Material in Terms of the Extension Ratios. Journal of Applied Physics, 38(7), 2997-3002. doi:10.1063/1.171003

    Optical techniques for 3D surface reconstruction in computer-assisted laparoscopic surgery

    Get PDF
    One of the main challenges for computer-assisted surgery (CAS) is to determine the intra-opera- tive morphology and motion of soft-tissues. This information is prerequisite to the registration of multi-modal patient-specific data for enhancing the surgeon’s navigation capabilites by observ- ing beyond exposed tissue surfaces and for providing intelligent control of robotic-assisted in- struments. In minimally invasive surgery (MIS), optical techniques are an increasingly attractive approach for in vivo 3D reconstruction of the soft-tissue surface geometry. This paper reviews the state-of-the-art methods for optical intra-operative 3D reconstruction in laparoscopic surgery and discusses the technical challenges and future perspectives towards clinical translation. With the recent paradigm shift of surgical practice towards MIS and new developments in 3D opti- cal imaging, this is a timely discussion about technologies that could facilitate complex CAS procedures in dynamic and deformable anatomical regions

    Current-based 4D shape analysis for the mechanical personalization of heart models

    Get PDF
    Abstract. Patient-specific models of the heart may lead to better understanding of cardiovascular diseases and better planning of therapy. A machine-learning approach to the personalization of an electro-mechanical model of the heart, from the kinematics of the endo- and epicardium, is presented in this paper. We use 4D mathematical currents to encapsulate information about the shape and deformation of the heart. The method is largely insensitive to initialization and does not require on-line simulation of the cardiac function. In this work, we demonstrate the performance of our approach for the joint estimation of three parameters on one heart geometry. We manage to retrieve parameters such that the model matches the 4D observations with an accuracy below the voxel size, in less than three minutes of computation

    Generation of ultra-realistic synthetic echocardiographic sequences

    Get PDF
    International audienceThis paper proposes a new simulation framework for generat-ing realistic 3D ultrasound synthetic images that can serve for validating strain quantification algorithms. Our approach ex-tends previous work and combines a real ultrasound sequence with synthetic biomechanical and ultrasound models. It pro-vides images that fairly represent all typical ultrasound arti-facts. Ground truth motion fields are unbiased to any track-ing algorithm and model both healthy and pathological con-ditions
    corecore