SpikingLab: modelling agents controlled by Spiking Neural Networks in Netlogo

The scientific interest attracted by Spiking Neural Networks (SNN) has lead to the development of tools for the simulation and study of neuronal dynamics ranging from phenomenological models to the more sophisticated and biologically accurate Hodgkin-and-Huxley-based and multi-compartmental models. However, despite the multiple features offered by neural modelling tools, their integration with environments for the simulation of robots and agents can be challenging and time consuming. The implementation of artificial neural circuits to control robots generally involves the following tasks: (1) understanding the simulation tools, (2) creating the neural circuit in the neural simulator, (3) linking the simulated neural circuit with the environment of the agent and (4) programming the appropriate interface in the robot or agent to use the neural controller. The accomplishment of the above-mentioned tasks can be challenging, especially for undergraduate students or novice researchers. This paper presents an alternative tool which facilitates the simulation of simple SNN circuits using the multi-agent simulation and the programming environment Netlogo (educational software that simplifies the study and experimentation of complex systems). The engine proposed and implemented in Netlogo for the simulation of a functional model of SNN is a simplification of integrate and fire (I&F) models. The characteristics of the engine (including neuronal dynamics, STDP learning and synaptic delay) are demonstrated through the implementation of an agent representing an artificial insect controlled by a simple neural circuit. The setup of the experiment and its outcomes are described in this work

Disentangling astroglial physiology with a realistic cell model in silico

Electrically non-excitable astroglia take up neurotransmitters, buffer extracellular K+ and generate Ca2+ signals that release molecular regulators of neural circuitry. The underlying machinery remains enigmatic, mainly because the sponge-like astrocyte morphology has been difficult to access experimentally or explore theoretically. Here, we systematically incorporate multi-scale, tri-dimensional astroglial architecture into a realistic multi-compartmental cell model, which we constrain by empirical tests and integrate into the NEURON computational biophysical environment. This approach is implemented as a flexible astrocyte-model builder ASTRO. As a proof-of-concept, we explore an in silico astrocyte to evaluate basic cell physiology features inaccessible experimentally. Our simulations suggest that currents generated by glutamate transporters or K+ channels have negligible distant effects on membrane voltage and that individual astrocytes can successfully handle extracellular K+ hotspots. We show how intracellular Ca2+ buffers affect Ca2+ waves and why the classical Ca2+ sparks-and-puffs mechanism is theoretically compatible with common readouts of astroglial Ca2+ imaging

Men's Experiences of the UK Criminal Justice System Following Female-Perpetrated Intimate Partner Violence

© 2015 Springer Science+Business Media New York The current study aimed to explore men’s experience of the UK Criminal Justice System (CJS) following female-perpetrated intimate partner violence (IPV). Unstructured face-to-face and Skype interviews were conducted with six men aged between 40–65 years. Interviews were transcribed and analysed using interpretative phenomenological analysis (IPA). Due to the method of analysis and the sensitive nature of the research, the researcher engaged in a process of reflexivity. Four main themes were identified, including ‘Guilty until Proven Innocent: Victim Cast as Perpetrator;’ ‘Masculine Identity;’ ‘Psychological Impact’ and ‘Light at the End of the Tunnel.’ Themes were discussed and illustrated with direct quotes drawn from the transcripts. Directions for future research, criminal justice interventions, and therapeutic interventions were discussed

A Federated Design for a Neurobiological Simulation Engine: The CBI Federated Software Architecture

Simulator interoperability and extensibility has become a growing requirement in computational biology. To address this, we have developed a federated software architecture. It is federated by its union of independent disparate systems under a single cohesive view, provides interoperability through its capability to communicate, execute programs, or transfer data among different independent applications, and supports extensibility by enabling simulator expansion or enhancement without the need for major changes to system infrastructure. Historically, simulator interoperability has relied on development of declarative markup languages such as the neuron modeling language NeuroML, while simulator extension typically occurred through modification of existing functionality. The software architecture we describe here allows for both these approaches. However, it is designed to support alternative paradigms of interoperability and extensibility through the provision of logical relationships and defined application programming interfaces. They allow any appropriately configured component or software application to be incorporated into a simulator. The architecture defines independent functional modules that run stand-alone. They are arranged in logical layers that naturally correspond to the occurrence of high-level data (biological concepts) versus low-level data (numerical values) and distinguish data from control functions. The modular nature of the architecture and its independence from a given technology facilitates communication about similar concepts and functions for both users and developers. It provides several advantages for multiple independent contributions to software development. Importantly, these include: (1) Reduction in complexity of individual simulator components when compared to the complexity of a complete simulator, (2) Documentation of individual components in terms of their inputs and outputs, (3) Easy removal or replacement of unnecessary or obsoleted components, (4) Stand-alone testing of components, and (5) Clear delineation of the development scope of new components

The Eyes Have It: Sex and Sexual Orientation Differences in Pupil Dilation Patterns

Recent research suggests profound sex and sexual orientation differences in sexual response. These results, however, are based on measures of genital arousal, which have potential limitations such as volunteer bias and differential measures for the sexes. The present study introduces a measure less affected by these limitations. We assessed the pupil dilation of 325 men and women of various sexual orientations to male and female erotic stimuli. Results supported hypotheses. In general, self-reported sexual orientation corresponded with pupil dilation to men and women. Among men, substantial dilation to both sexes was most common in bisexual-identified men. In contrast, among women, substantial dilation to both sexes was most common in heterosexual-identified women. Possible reasons for these differences are discussed. Because the measure of pupil dilation is less invasive than previous measures of sexual response, it allows for studying diverse age and cultural populations, usually not included in sexuality research

Applications Know Best: Performance-Driven Memory Overcommit with Ginkgo

Abstract—Memory overcommitment enables cloud providers to host more virtual machines on a single physical server, exploiting spare CPU and I/O capacity when physical memory becomes the bottleneck for virtual machine deployment. However, overcommiting memory can also cause noticeable application performance degradation. We present Ginkgo, a policy frame-work for overcomitting memory in an informed and automated fashion. By directly correlating application-level performance to memory, Ginkgo automates the redistribution of scarce memory across all virtual machines, satisfying performance and capacity constraints. Ginkgo also achieves memory gains for traditionally fixed-size Java applications by coordinating the redistribution of available memory with the activities of the Java Virtual Machine heap. When compared to a non-overcommited system, Ginkgo runs the DayTrader 2.0 and SPECWeb 2009 benchmarks with the same number of virtual machines while saving up to 73% (50 % omitting free space) of a physical server’s memory while keeping application performance degradation within 7%. I

The debris disk host star HD 61005: a member of the Argus Association?

HD 61005 is a nearby young solar type star that shows a large infrared excess due to a debris disk. The disk has been recently imaged from ground and space, with indications of several components. Some characteristics of the disk suggest the presence of planetary companions around the star, that remain undetected in deep adaptive optics imaging. For a better understanding of the system we aim to refine the determination of the stellar parameters, with emphasis on the stellar age and system orientation. We used ASAS and Hipparcos photometry and FEROS spectra to determine the rotation period, radial and rotational velocity, chromospheric emission, effective temperature, and chemical composition. We find no indication of any misalignment between the star rotation axis and the disk. The standard age calibrations applied to several indicators yield an age close to that of the Pleiades (120 Myr); however the kinematic properties strongly support its membership in the younger (40 Myr) Argus association, which also includes the IC 2391 open cluster. Detailed comparison of the properties of HD 61005 and IC 2391 members shows that the characteristics of HD 61005 are compatible with membership to the Argus association, once its rather slow rotation is taken into account, because lithium and other age indicators are somewhat correlated with stellar rotation at a fixed age. We also identify systematic differences between the field and cluster population of the Argus association, which are probably selection effects, so we suggest that additional members with slower rotation and lower activity level are waiting to be identified.Comment: A&A, in press, 13 pages, 11 figure

The young active star SAO 51891 (V383 Lac)

Our aim is investigating surface inhomogeneities of the young late-type star SAO51891, from photosphere to upper chromosphere, analyzing contemporaneous high-resolution spectra and broad-band photometry. The FOCES@CAHA spectral range is used to determine spectral classification and derive vsini and Vrad. The Li abundance is measured to estimate the age. The BVRIJHKs bands are used to construct the SED. The variations of our BV fluxes and Teff are used to infer the presence of photospheric spots and observe their behavior over time. The chromospheric activity is studied applying the spectral subtraction technique to Halpha, CaII H&K, Heps, and CaII IRT lines. We find SAO51891 to be a young K0-1V star with Li abundance close to the Pleiades upper envelope, confirming its youth (~100 Myr), also inferred from its kinematical membership to the Local Association. We detect no IR excess from SED analysis, and rotational modulation of luminosity, Teff, CaII, and Heps total fluxes. A spot model with two active regions, ~240 K cooler than the surrounding photosphere, fits our light/Teff curves, and reproduces the small-amplitude Vrad variations. The anti-correlation of light curves and chromospheric diagnostics indicates plages spatially associated with spots. The large amplitude observed in the Heps-flux curve suggests that this line is very sensitive to the plage presence. Finally, SAO51891 is a young active star, lacking significant amounts of circumstellar dust or any evidence for low mass companions. The spots turn out to be larger and warmer than those in less active MS stars. The Vrad variation produced by spots has an amplitude comparable with those induced by Jupiter-mass planets orbiting close to the star. SAO51891 is a good example of star where the detection of planets may be hampered by the high activity level.Comment: 16 pages, 12 figures, 7 tables, accepted by Astronomy and Astrophysics; abstract here was shortene

Spatial co-localisation of extreme weather events: a clear and present danger

This is the author accepted manuscript. The final version is available from Wiley via the DOI in this recordExtreme weather events have become a dominant feature of the narrative surrounding changes in global climate. with large impacts on ecosystem stability, functioning and resilience, however, understanding of their risk of co-occurrence at the regional scale is lacking. Based on the UK Met Office’s long-term temperature and rainfall records, we present the first evidence demonstrating significant increases in the magnitude, direction of change and spatial co-localization of extreme weather events since 1961. Combining this new understanding with land use datasets allowed us to assess the likely consequences on future agricultural production and conservation priority areas. All land uses are impacted by the increasing risk of at least one extreme event and conservation areas were identified as hotspots of risk for the cooccurrence of multiple event types. Our findings provide a basis to regionally guide land use optimisation, land management practices and regulatory actions preserving ecosystem services against multiple climate threats.Welsh GovernmentHigher Education Funding Council for Wale

Innerbetriebliche Ecopreneure durch Umweltmanagementsysteme? : eine Langzeitanalyse von Bedingungen für proaktives Umweltschutzverhalten

Erworben im Rahmen der Schweizer Nationallizenzen (http://www.nationallizenzen.ch)Die vorliegende Arbeit thematisiert, welche Unterstützungspotentiale Umweltmanagementsysteme (UMS) für Innerbetriebliches Ecopreneurship – proaktives, umweltbewusstes Arbeitsverhalten aller Unternehmensmitglieder – bieten. Eine Längsschnittuntersuchung in sechs deutschen Unternehmen ermittelt situative und personelle Faktoren, die Ecopreneurship maßgeblich beeinflussen. Unternehmen mit UMS-Aktivitäten weisen positivere Einschätzungen in den relevanten Verhaltensbedingungen und dem Ecopreneurship auf, aber keine kontinuierliche Verbesserungen von Ecopreneurship im Zeitverlauf. Daraus ergeben sich weitere Forschungsfragen, etwa zur Volatilität des proaktiven Arbeitsverhaltens