4,214 research outputs found
Super-Fast Distributed Algorithms for Metric Facility Location
This paper presents a distributed O(1)-approximation algorithm, with
expected- running time, in the model for
the metric facility location problem on a size- clique network. Though
metric facility location has been considered by a number of researchers in
low-diameter settings, this is the first sub-logarithmic-round algorithm for
the problem that yields an O(1)-approximation in the setting of non-uniform
facility opening costs. In order to obtain this result, our paper makes three
main technical contributions. First, we show a new lower bound for metric
facility location, extending the lower bound of B\u{a}doiu et al. (ICALP 2005)
that applies only to the special case of uniform facility opening costs. Next,
we demonstrate a reduction of the distributed metric facility location problem
to the problem of computing an O(1)-ruling set of an appropriate spanning
subgraph. Finally, we present a sub-logarithmic-round (in expectation)
algorithm for computing a 2-ruling set in a spanning subgraph of a clique. Our
algorithm accomplishes this by using a combination of randomized and
deterministic sparsification.Comment: 15 pages, 2 figures. This is the full version of a paper that
appeared in ICALP 201
Towards a complexity theory for the congested clique
The congested clique model of distributed computing has been receiving
attention as a model for densely connected distributed systems. While there has
been significant progress on the side of upper bounds, we have very little in
terms of lower bounds for the congested clique; indeed, it is now know that
proving explicit congested clique lower bounds is as difficult as proving
circuit lower bounds.
In this work, we use various more traditional complexity-theoretic tools to
build a clearer picture of the complexity landscape of the congested clique:
-- Nondeterminism and beyond: We introduce the nondeterministic congested
clique model (analogous to NP) and show that there is a natural canonical
problem family that captures all problems solvable in constant time with
nondeterministic algorithms. We further generalise these notions by introducing
the constant-round decision hierarchy (analogous to the polynomial hierarchy).
-- Non-constructive lower bounds: We lift the prior non-uniform counting
arguments to a general technique for proving non-constructive uniform lower
bounds for the congested clique. In particular, we prove a time hierarchy
theorem for the congested clique, showing that there are decision problems of
essentially all complexities, both in the deterministic and nondeterministic
settings.
-- Fine-grained complexity: We map out relationships between various natural
problems in the congested clique model, arguing that a reduction-based
complexity theory currently gives us a fairly good picture of the complexity
landscape of the congested clique
Design, Implementation and First Measurements with the Medipix Neutron Camera in CMS
The Medipix detector is the first device dedicated to measuring mixed-field
radiation in the CMS cavern and able to distinguish between different particle
types. Medipix2-MXR chips bump bonded to silicon sensors with various neutron
conversion layers developed by the IEAP CTU in Prague were successfully
installed for the 2008 LHC start-up in the CMS experimental and services
caverns to measure the flux of various particle types, in particular neutrons.
They have operated almost continuously during the 2010 run period, and the
results shown here are from the proton run between the beginning of July and
the end of October 2010. Clear signals are seen and different particle types
have been observed during regular LHC luminosity running, and an agreement in
the measured flux rate is found with the simulations. These initial results are
promising, and indicate that these devices have the potential for further and
future LHC and high energy physics applications as radiation monitoring devices
for mixed field environments, including neutron flux monitoring. Further
extensions are foreseen in the near future to increase the performance of the
detector and its coverage for monitoring in CMS.Comment: 15 pages, 16 figures, submitted to JINS
Improve your Galaxy text life: The Query Tabular Tool [version 1; referees: 1 approved, 2 approved with reservations]
Galaxy provides an accessible platform where multi-step data analysis workflows integrating disparate software can be run, even by researchers with limited programming expertise. Applications of such sophisticated workflows are many, including those which integrate software from different ‘omic domains (e.g. genomics, proteomics, metabolomics). In these complex workflows, intermediate outputs are often generated as tabular text files, which must be transformed into customized formats which are compatible with the next software tools in the pipeline. Consequently, many text manipulation steps are added to an already complex workflow, overly complicating the process and decreasing usability, especially for non-expert bench researchers focused on obtaining results. In some cases, limitations to existing text manipulation are such that desired analyses can only be carried out using highly sophisticated processing steps beyond the reach of most users. As a solution, we have developed the Query Tabular Galaxy tool, which leverages a SQLite database generated from tabular input data. This database can be queried and manipulated to produce transformed and customized tabular outputs compatible with downstream processing steps. Regular expressions can also be utilized for even more sophisticated manipulations, such as find and replace and other filtering actions. Using several Galaxy-based multi-omic workflows as an example, we demonstrate how the Query Tabular tool dramatically streamlines and simplifies the creation of multi-step analyses, efficiently enabling complicated textual manipulations and processing. This tool should find broad utility for users of the Galaxy platform seeking to develop and use sophisticated workflows involving text manipulation on tabular outputs
Effectiveness of antifungal treatments during chytridiomycosis epizootics in populations of an endangered frog
The recently-emerged amphibian chytrid fungus Batrachochytrium dendrobatidis (Bd) has had an unprecedented impact on global amphibian populations, and highlights the urgent need to develop effective mitigation strategies. We conducted in-situ antifungal treatment experiments in wild populations of the endangered mountain yellow-legged frog during or immediately after Bd-caused mass die-off events. The objective of treatments was to reduce Bd infection intensity (“load”) and in doing so alter frog-Bd dynamics and increase the probability of frog population persistence despite ongoing Bd infection. Experiments included treatment of early life stages (tadpoles and subadults) with the antifungal drug itraconazole, treatment of adults with itraconazole, and augmentation of the skin microbiome of subadults with Janthinobacterium lividum, a commensal bacterium with antifungal properties. All itraconazole treatments caused immediate reductions in Bd load, and produced longer-term effects that differed between life stages. In experiments focused on early life stages, Bd load was reduced in the 2 months immediately following treatment and was associated with increased survival of subadults. However, Bd load and frog survival returned to pre-treatment levels in less than 1 year, and treatment had no effect on population persistence. In adults, treatment reduced Bd load and increased frog survival over the entire 3-year post-treatment period, consistent with frogs having developed an effective adaptive immune response against Bd. Despite this protracted period of reduced impacts of Bd on adults, recruitment into the adult population was limited and the population eventually declined to near-extirpation. In the microbiome augmentation experiment, exposure of subadults to a solution of J. lividum increased concentrations of this potentially protective bacterium on frogs. However, concentrations declined to baseline levels within 1 month and did not have a protective effect against Bd infection. Collectively, these results indicate that our mitigation efforts were ineffective in causing long-term changes in frog-Bd dynamics and increasing population persistence, due largely to the inability of early life stages to mount an effective immune response against Bd. This results in repeated recruitment failure and a low probability of population persistence in the face of ongoing Bd infection
Search for single top quarks in the tau+jets channel using 4.8 fb of collision data
We present the first direct search for single top quark production using tau
leptons. The search is based on 4.8 fb of integrated luminosity
collected in collisions at =1.96 TeV with the D0 detector
at the Fermilab Tevatron Collider. We select events with a final state
including an isolated tau lepton, missing transverse energy, two or three jets,
one or two of them tagged. We use a multivariate technique to discriminate
signal from background. The number of events observed in data in this final
state is consistent with the signal plus background expectation. We set in the
tau+jets channel an upper limit on the single top quark cross section of
\TauLimObs pb at the 95% C.L. This measurement allows a gain of 4% in expected
sensitivity for the observation of single top production when combining it with
electron+jets and muon+jets channels already published by the D0 collaboration
with 2.3 fb of data. We measure a combined cross section of
\SuperCombineXSall pb, which is the most precise measurement to date.Comment: 12 pages, 5 figure
Precise measurement of the W-boson mass with the CDF II detector
We have measured the W-boson mass MW using data corresponding to 2.2/fb of
integrated luminosity collected in proton-antiproton collisions at 1.96 TeV
with the CDF II detector at the Fermilab Tevatron collider. Samples consisting
of 470126 W->enu candidates and 624708 W->munu candidates yield the measurement
MW = 80387 +- 12 (stat) +- 15 (syst) = 80387 +- 19 MeV. This is the most
precise measurement of the W-boson mass to date and significantly exceeds the
precision of all previous measurements combined
Search for the standard model Higgs boson decaying to a pair in events with no charged leptons and large missing transverse energy using the full CDF data set
We report on a search for the standard model Higgs boson produced in
association with a vector boson in the full data set of proton-antiproton
collisions at TeV recorded by the CDF II detector at the
Tevatron, corresponding to an integrated luminosity of 9.45 fb. We
consider events having no identified charged lepton, a transverse energy
imbalance, and two or three jets, of which at least one is consistent with
originating from the decay of a quark. We place 95% credibility level upper
limits on the production cross section times standard model branching fraction
for several mass hypotheses between 90 and . For a Higgs
boson mass of , the observed (expected) limit is 6.7
(3.6) times the standard model prediction.Comment: Accepted by Phys. Rev. Let
- …