ICT-based solution approach for collaborative delivery of customised products

© 2016 Taylor & Francis. Growing interest on business collaboration motivates todays industries, especially small and medium enterprises (SMEs) to establish and manage dynamic and non-hierarchical business networks to respond to market opportunities with added business benefits. This business environment requires concurrent work and real-time information sharing between key business partners in order to design and develop customised products. The use of traditional communication media such as e-mail, phone and fax is not satisfactory to get real-time information and is time-consuming and most often ineffective. In such environments, an Information and Communication Technology (ICT)/Web-based technology supports real-time information sharing among networked SMEs for the collaborative design and manufacturing of customised products. This study proposes an innovative ICT platform supporting SMEs collaboration, through Web and the Internet of Things technologies, which follows the Net-Challenge conceptual approach and methodological guidelines for SMEs to form and operate virtual organisations for the collaborative development and delivery of customised products. The ICT Platform was assessed in three different industry domains, namely the textile and apparel, the footwear and the machine tools, respectively. This ICT solution promotes collaboration, with substantial advantages for SMEs including the reduction of costs and delivery time and improvement of the innovation potential

Conformational effects on the Circular Dichroism of Human Carbonic Anhydrase II: a multilevel computational study

Circular Dichroism (CD) spectroscopy is a powerful method for investigating conformational changes in proteins and therefore has numerous applications in structural and molecular biology. Here a computational investigation of the CD spectrum of the Human Carbonic Anhydrase II (HCAII), with main focus on the near-UV CD spectra of the wild-type enzyme and it seven tryptophan mutant forms, is presented and compared to experimental studies. Multilevel computational methods (Molecular Dynamics, Semiempirical Quantum Mechanics, Time-Dependent Density Functional Theory) were applied in order to gain insight into the mechanisms of interaction between the aromatic chromophores within the protein environment and understand how the conformational flexibility of the protein influences these mechanisms. The analysis suggests that combining CD semi empirical calculations, crystal structures and molecular dynamics (MD) could help in achieving a better agreement between the computed and experimental protein spectra and provide some unique insight into the dynamic nature of the mechanisms of chromophore interactions

The influence of using digital diagnostic information on orthodontic treatment planning - a pilot study

The purpose of this pilot study was to assess whether orthodontic treatment planning is reproducible when carried out using digital records compared with clinical examinations or using standard records. The study also assessed patients' opinion of face-to-face consultations and potential use of teleorthodontics. The study was designed as a prospective observational cross-sectional pilot study and carried out in a UK dental teaching hospital involving 27 subjects. Four consultant Orthodontists carried out treatment planning, firstly following a clinical examination, then using standard records, and then using digital records. Each subject completed a questionnaire. Cohen's kappa coefficient and Fleiss' kappa coefficient were used to assess intra-observer reproducibility and inter-observer reproducibility of treatment planning decisions, respectively. A change in the diagnostic information format affected treatment planning reproducibility for half of the observers. Inter-observer reproducibility was greater when using hard copy records in comparison to digital records. No subjects were unsatisfied with their face-to-face consultation

Electron Capture Dissociation Mass Spectrometry of Tyrosine Nitrated Peptides

In vivo protein nitration is associated with many disease conditions that involve oxidative stress and inflammatory response. The modification involves addition of a nitro group at the position ortho to the phenol group of tyrosine to give 3-nitrotyrosine. To understand the mechanisms and consequences of protein nitration, it is necessary to develop methods for identification of nitrotyrosine-containing proteins and localization of the sites of modification.Here, we have investigated the electron capture dissociation (ECD) and collision-induced association (CID) behavior of 3-nitrotyrosine-containing peptides. The presence of nitration did not affect the CID behavior of the peptides. For the doubly-charged peptides, addition of nitration severely inhibited the production of ECD sequence fragments. However, ECD of the triply-charged nitrated peptides resulted in some singly-charged sequence fragments. ECD of the nitrated peptides is characterized by multiple losses of small neutral species including hydroxyl radicals, water and ammonia. The origin of the neutral losses has been investigated by use of activated ion (AI) ECD. Loss of ammonia appears to be the result of non-covalent interactions between the nitro group and protonated lysine side-chains

Statistical analysis of the sampling design: FishPi case study on the biological sampling of the European hake fishery

FishPi is a pilot project financed through an European grant (MARE/2014/19) aiming to strengthen regional coordination in the area of fisheries data collection. This project includes four case studies, one of which aims at analyzing alternative sampling plans for fisheries operating on Northern & Southern hake stocks. The case study analyzes a variety of sampling design scenarios, from Simple Random Sampling to combinations of stratified sampling designs (by country, by port, by quarter…), using anonymised landings data from logbooks and sales notes (2013-2014). The results were compared regarding bias and precision to evaluate the best approach. The most precise estimates of total catch were obtained in scenarios stratified by port and, secondly, by port and country and by port and quarter. The general conclusion was that regional sampling designs stratified by port provided improved precision in this fishery. Apart from statistical considerations, this conclusion was also discussed under other points of view to give a feasibility perspective showing that coverage by country, and also by domain (stock), would be compromised if regional design is simply based on statistical analyses. Efficiency and precision of sampling were found to be highly sensitive to the sampling assumptions and in general countries with smaller contributions to overall landings of hake would see their sampling plans reduced, compromising other requirements for advice such as those related to other stocks or local management measures established by National governments. Hence further analyses are being considered that integrate biometrics, cost-benefit aspects, and concurrent or single-stock sampling strategies

Report of the Working Group on Commercial Catches (WGCATCH)

The Working Group on Commercial Catches (WGCATCH), chaired by Hans Gerritsen (Ireland) and Nuno Prista (Sweden), met in Lisbon, Portugal, 9–13 November 2015. WGCATCH is responsible for documenting national fishery sampling schemes, establishing best practice and guidelines on sampling and estimation procedures, and providing advice on other uses of fishery data. The meeting was attended by 30 participants from 15 countries. The group addressed a large number of terms of reference and the meeting was con-ducted through presentations, discussions and analysis of questionnaires. The main terms of reference were addressed in subgroups. The report is structured directly along the terms of reference and the main outcomes are listed below. Data collection schemes for small-scale fisheries WGCATCH provided descriptions of national small-scale fisheries through question-naires. An overview was obtained on the current data collection methods. Two major approaches were identified - census (e.g., sales, logbooks) and sampling methods (e.g., catch surveys) - and their main pros and cons were discussed. In most cases, specific sampling approaches are needed for these fisheries. The group developed a work plan to establish good-practice guidelines. Analysis of case studies of commercial fishery sampling designs and estimation Case studies of sampling designs and estimation involving megrim in divisions 7-8 were presented. A common theme is that issues with practical implementation of prob-ability-based sampling remain. WGCATCH summarized the main issues and provided a set of possible solutions. The group also provided guidance on dealing with previous data collected under métier-based sampling designs. Simulation models to investigate survey designs Several simulation studies were presented, most of them outlining the work of fishPi project (funded under MARE/2014/19) in evaluating regional sampling designs. A crit-ical review was carried out and WGCATCH produced general considerations and guidelines. WGCATCH recommends that these are taken into account when analysing the results of simulations of regional sampling design at RCM level. The affect of the landing obligation on catch sampling opportunities The affects on sampling and data quality of the current implementation of the landing obligation in the Baltic were reviewed. The group found that refusal rates for observer trips have increased to nearly 100% in at least one country, while in many other coun-tries on-board observer programmes did not suffer noticeable changes. WGCATCH established that the catches below the minimum size cannot be accurately estimated by sampling the landings below the minimum size because an unknown proportion of the catches may be discarded. The group also reiterated that it is important that the logbooks distinguish landings below and above the minimum size. Publication on statistically sound sampling schemes WGCATCH drafted detailed plans to produce a peer-reviewed paper in 2016. The pa-per will provide a synthesis of the evolution of sampling design towards best practice, illustrated with a number of concise case studies. Estimation procedures in the Regional Database (RDB) The work of WKRDB 2015 presented alongside existing and planned estimation pro-cedures in the RDB. Current work by Norway on a software package that will allow design-based estimation and optimization for stock assessment purposes was also pre-sented. The advantages of ensuring compatibility of this new software with the devel-opments currently planned for RDB-FishFrame are underscored. Repository of resources relevant to catch sampling WGCATCH initiated a repository with key resources; putting them into context with brief descriptions or review of each report, paper, book, website, software package etc. The intention is for this repository to be made available online by ICES. Sampling of incidental bycatches WGCATCH agreed to start routine documentation of sampling practices for bycatches of protected, endangered and threatened species (PETS) and rare fish species as well as routine evaluation of the limitations of current methods for collection and analysis. Training course on Design and Analysis of Statistical Sound catch sampling pro-grammes WGCATCH considered continuous training and expertise on sampling design, estima-tion and simulation to be the basis for successful implementation of statistical sound catch sampling programs. A new ICES Training Course in Design and Analysis of Sta-tistical Sound will take place at ICES HQ in Copenhagen, 12–16 September 2016. WGCATCH recommends that RCMs promote the attendance of these meetings among all MS involved

Intratumoural and peripheral blood lymphocyte subsets in patients with metastatic renal cell carcinoma undergoing interleukin-2 based immunotherapy: association to objective response and survival

The aim of the present study was to analyse lymphocyte subsets in consecutive peripheral blood samples and consecutive tumour tissue core needle biopsies performed before and during interleukin-2 based immunotherapy, and to correlate the findings with objective response and survival. Twenty-six patients with metastatic renal cell carcinoma were treated with low dose s.c. interleukin-2, interferon-α and histamine. A total of 250 blood samples and 62 core needle biopsies from 23 and 19 of these patients, respectively, were analysed. After 2 weeks of treatment, a significant positive correlation between absolute number of peripheral blood lymphocytes (P=0.028), CD3 (P=0.017), CD57 (P=0.041) and objective response was demonstrated. There was no correlation between any peripheral blood leukocyte subsets and survival. Cytotoxicity of peripheral blood mononuclear cells was not correlated to objective response or survival. Within the tumour tissue at baseline, a significant positive correlation between CD4 (P=0.027), CD8 (P=0.028), CD57 (P=0.007) and objective response was demonstrated. After one month of immunotherapy, a significant positive correlation between intratumoral CD3 (P=0.026), CD8 (P=0.015), CD57 (P=0.009) and objective response was demonstrated. A significant positive correlation between intratumoral baseline CD4 (P=0.047), baseline CD57 (P=0.035), CD3 at one month (P=0.049) and survival was demonstrated. These data provide novel in vivo evidence of the possible contribution of lymphocyte subsets in the tumour reduction in responding patients during interleukin-2 based immunotherapy. Confirmation of the results requires further studies including a larger number of patients

Discovery of catalases in members of the Chlamydiales order.

Catalase is an important virulence factor for survival in macrophages and other phagocytic cells. In Chlamydiaceae, no catalase had been described so far. With the sequencing and annotation of the full genomes of Chlamydia-related bacteria, the presence of different catalase-encoding genes has been documented. However, their distribution in the Chlamydiales order and the functionality of these catalases remain unknown. Phylogeny of chlamydial catalases was inferred using MrBayes, maximum likelihood, and maximum parsimony algorithms, allowing the description of three clade 3 and two clade 2 catalases. Only monofunctional catalases were found (no catalase-peroxidase or Mn-catalase). All presented a conserved catalytic domain and tertiary structure. Enzymatic activity of cloned chlamydial catalases was assessed by measuring hydrogen peroxide degradation. The catalases are enzymatically active with different efficiencies. The catalase of Parachlamydia acanthamoebae is the least efficient of all (its catalytic activity was 2 logs lower than that of Pseudomonas aeruginosa). Based on the phylogenetic analysis, we hypothesize that an ancestral class 2 catalase probably was present in the common ancestor of all current Chlamydiales but was retained only in Criblamydia sequanensis and Neochlamydia hartmannellae. The catalases of class 3, present in Estrella lausannensis and Parachlamydia acanthamoebae, probably were acquired by lateral gene transfer from Rhizobiales, whereas for Waddlia chondrophila they likely originated from Legionellales or Actinomycetales. The acquisition of catalases on several occasions in the Chlamydiales suggests the importance of this enzyme for the bacteria in their host environment

Ratings of age of acquisition of 299 words across 25 languages: Is there a cross-linguistic order of words?

We present a new set of subjective age-of-acquisition (AoA) ratings for 299 words (158 nouns, 141 verbs) in 25 languages from five language families (Afro-Asiatic: Semitic languages; Altaic: one Turkic language: Indo-European: Baltic, Celtic, Germanic, Hellenic, Slavic, and Romance languages; Niger-Congo: one Bantu language; Uralic: Finnic and Ugric languages). Adult native speakers reported the age at which they had learned each word. We present a comparison of the AoA ratings across all languages by contrasting them in pairs. This comparison shows a consistency in the orders of ratings across the 25 languages. The data were then analyzed (1) to ascertain how the demographic characteristics of the participants influenced AoA estimations and (2) to assess differences caused by the exact form of the target question (when did you learn vs. when do children learn this word); (3) to compare the ratings obtained in our study to those of previous studies; and (4) to assess the validity of our study by comparison with quasi-objective AoA norms derived from the MacArthur–Bates Communicative Development Inventories (MB-CDI). All 299 words were judged as being acquired early (mostly before the age of 6 years). AoA ratings were associated with the raters’ social or language status, but not with the raters’ age or education. Parents reported words as being learned earlier, and bilinguals reported learning them later. Estimations of the age at which children learn the words revealed significantly lower ratings of AoA. Finally, comparisons with previous AoA and MB-CDI norms support the validity of the present estimations. Our AoA ratings are available for research or other purposes