The intergalactic medium thermal history at redshift z=1.7--3.2 from the Lyman alpha forest: a comparison of measurements using wavelets and the flux distribution

We investigate the thermal history of the intergalactic medium (IGM) in the redshift interval z=1.7--3.2 by studying the small-scale fluctuations in the Lyman alpha forest transmitted flux. We apply a wavelet filtering technique to eighteen high resolution quasar spectra obtained with the Ultraviolet and Visual Echelle Spectrograph (UVES), and compare these data to synthetic spectra drawn from a suite of hydrodynamical simulations in which the IGM thermal state and cosmological parameters are varied. From the wavelet analysis we obtain estimates of the IGM thermal state that are in good agreement with other recent, independent wavelet-based measurements. We also perform a reanalysis of the same data set using the Lyman alpha forest flux probability distribution function (PDF), which has previously been used to measure the IGM temperature-density relation. This provides an important consistency test for measurements of the IGM thermal state, as it enables a direct comparison of the constraints obtained using these two different methodologies. We find the constraints obtained from wavelets and the flux PDF are formally consistent with each other, although in agreement with previous studies, the flux PDF constraints favour an isothermal or inverted IGM temperature-density relation. We also perform a joint analysis by combining our wavelet and flux PDF measurements, constraining the IGM thermal state at z=2.1 to have a temperature at mean density of T0/[10^3 K]=17.3 +/- 1.9 and a power-law temperature-density relation exponent gamma=1.1 +/- 0.1 (1 sigma). Our results are consistent with previous observations that indicate there may be additional sources of heating in the IGM at z<4.Comment: 15 pages, 14 figures, matches version accepted for publication on MNRA

Construction and Modelling of an Inducible Positive Feedback Loop Stably Integrated in a Mammalian Cell-Line

Understanding the relationship between topology and dynamics of transcriptional regulatory networks in mammalian cells is essential to elucidate the biology of complex regulatory and signaling pathways. Here, we characterised, via a synthetic biology approach, a transcriptional positive feedback loop (PFL) by generating a clonal population of mammalian cells (CHO) carrying a stable integration of the construct. The PFL network consists of the Tetracycline-controlled transactivator (tTA), whose expression is regulated by a tTA responsive promoter (CMV-TET), thus giving rise to a positive feedback. The same CMV-TET promoter drives also the expression of a destabilised yellow fluorescent protein (d2EYFP), thus the dynamic behaviour can be followed by time-lapse microscopy. The PFL network was compared to an engineered version of the network lacking the positive feedback loop (NOPFL), by expressing the tTA mRNA from a constitutive promoter. Doxycycline was used to repress tTA activation (switch off), and the resulting changes in fluorescence intensity for both the PFL and NOPFL networks were followed for up to 43 h. We observed a striking difference in the dynamics of the PFL and NOPFL networks. Using non-linear dynamical models, able to recapitulate experimental observations, we demonstrated a link between network topology and network dynamics. Namely, transcriptional positive autoregulation can significantly slow down the “switch off” times, as comparared to the nonautoregulatated system. Doxycycline concentration can modulate the response times of the PFL, whereas the NOPFL always switches off with the same dynamics. Moreover, the PFL can exhibit bistability for a range of Doxycycline concentrations. Since the PFL motif is often found in naturally occurring transcriptional and signaling pathways, we believe our work can be instrumental to characterise their behaviour

A White Paper on keV sterile neutrino Dark Matter

We present a comprehensive review of keV-scale sterile neutrino Dark Matter, collecting views and insights from all disciplines involved—cosmology, astrophysics, nuclear, and particle physics—in each case viewed from both theoretical and experimental/observational perspectives. After reviewing the role of active neutrinos in particle physics, astrophysics, and cosmology, we focus on sterile neutrinos in the context of the Dark Matter puzzle. Here, we first review the physics motivation for sterile neutrino Dark Matter, based on challenges and tensions in purely cold Dark Matter scenarios. We then round out the discussion by critically summarizing all known constraints on sterile neutrino Dark Matter arising from astrophysical observations, laboratory experiments, and theoretical considerations. In this context, we provide a balanced discourse on the possibly positive signal from X-ray observations. Another focus of the paper concerns the construction of particle physics models, aiming to explain how sterile neutrinos of keV-scale masses could arise in concrete settings beyond the Standard Model of elementary particle physics. The paper ends with an extensive review of current and future astrophysical and laboratory searches, highlighting new ideas and their experimental challenges, as well as future perspectives for the discovery of sterile neutrinos

A White Paper on keV Sterile Neutrino Dark Matter

We present a comprehensive review of keV-scale sterile neutrino Dark Matter,collecting views and insights from all disciplines involved - cosmology,astrophysics, nuclear, and particle physics - in each case viewed from boththeoretical and experimental/observational perspectives. After reviewing therole of active neutrinos in particle physics, astrophysics, and cosmology, wefocus on sterile neutrinos in the context of the Dark Matter puzzle. Here, wefirst review the physics motivation for sterile neutrino Dark Matter, based onchallenges and tensions in purely cold Dark Matter scenarios. We then round outthe discussion by critically summarizing all known constraints on sterileneutrino Dark Matter arising from astrophysical observations, laboratoryexperiments, and theoretical considerations. In this context, we provide abalanced discourse on the possibly positive signal from X-ray observations.Another focus of the paper concerns the construction of particle physicsmodels, aiming to explain how sterile neutrinos of keV-scale masses could arisein concrete settings beyond the Standard Model of elementary particle physics.The paper ends with an extensive review of current and future astrophysical andlaboratory searches, highlighting new ideas and their experimental challenges,as well as future perspectives for the discovery of sterile neutrinos

The broadening of Lyman-α forest absorption lines

We provide an analytical description of the line broadening of H I absorbers in the Lyman-α forest resulting from Doppler broadening and Jeans smoothing. We demonstrate that our relation captures the dependence of the line width on column density for narrow lines in z ∼ 3 mock spectra remarkably well. Broad lines at a given column density arise when the underlying density structure is more complex, and such clustering is not captured by our model. Our understanding of the line broadening opens the way to a new method to characterize the thermal state of the intergalactic medium and to determine the sizes of the absorbing structures

Is Poor Lithium Response in Individuals with Bipolar Disorder Associated with Increased Degradation of Tryptophan along the Kynurenine Pathway? Results of an Exploratory Study

Bipolar disorder is associated with an inflammation-triggered elevated catabolism of tryptophan to the kynurenine pathway, which impacts psychiatric symptoms and outcomes. The data indicate that lithium exerts anti-inflammatory effects by inhibiting indoleamine-2,3-dioxygenase (IDO)-1 activity. This exploratory study aimed to investigate the tryptophan catabolism in individuals with bipolar disorder (n = 48) compared to healthy controls (n = 48), and the associations with the response to mood stabilizers such as lithium, valproate, or lamotrigine rated with the Retrospective Assessment of the Lithium Response Phenotype Scale (or the Alda scale). The results demonstrate an association of a poorer response to lithium with higher levels of kynurenine, kynurenine/tryptophan ratio as a proxy for IDO-1 activity, as well as quinolinic acid, which, overall, indicates a pro-inflammatory state with a higher degradation of tryptophan towards the neurotoxic branch. The treatment response to valproate and lamotrigine was not associated with the levels of the tryptophan metabolites. These findings support the anti-inflammatory properties of lithium. Furthermore, since quinolinic acid has neurotoxic features via the glutamatergic pathway, they also strengthen the assumption that the clinical drug response might be associated with biochemical processes. The relationship between the lithium response and the measurements of the tryptophan to the kynurenine pathway is of clinical relevance and may potentially bring advantages towards a personalized medicine approach to bipolar disorder that allows for the selection of the most effective mood-stabilizing drug