299 research outputs found
Impact of sodium aluminate on the hydration process of alkali-activated ground granulated blast furnace slag
In the present investigation, the effect of the presence of highly soluble alumina source (sodium aluminate, NaAlO2) on Ground Granulated Blast furnace Slag (GGBS) hydration was considered. The GGBS was alkali-activated with sodium hydroxide (NaOH) or sodium carbonate (Na2CO3). The impact on the evolution on the setting time, hydration kinetics and strength development was first considered. In the case of NaOH-activated mixes, the presence of the alumina source led to the delay in setting and an extension of the induction period. The alumina additive led then to an extension of the workable time of the binder. For instance the initial setting time was extended from 30 min to more than 6 hours when adding 1% by weight of NaAlO2. The strength development was also significantly improved with addition of NaAlO2, both at early age and long term. In contrast, addition of NaAlO2 to the Na2CO3-activated mixes led to almost complete cessation of hydration (no measurable strength) within the whole dosage rate interval considered (0.1% to 2% of NaAlO2). Different techniques were used to investigate the impact of NaAlO2 on the hydration products development, including XRD, SEM image analysis and 27Al/29Si/23Na high-resolution NMR spectroscopy. It was found that the presence of the highly soluble alumina source led to rapid precipitation of Afm phases. It is suspected that, due to the low pH level in the case of the Na2CO3-activated mixes, the calcium ions are mainly distributed near the slag grain surfaces. The Afm phases may then mainly precipitate on the slag grains leading hydration blockage. Actually only Afm phases and Gaylussite were detected in the case of NaAlO2 blended Na2CO3-blended mixes
Two Novel PET Image Restoration Methods Guided by PET-MR Kernels:Application to Brain Imaging
Purpose: Post-reconstruction PET image restoration methods that take advantage of available anatomical information can play an important role in accurate quantification of PET images. However, when using anatomical information, the resulting PET image may lose resolution incertain regions where the anatomy does not agree with the change in functional activity. In thiswork this problem is addressed by using both MR and filtered PET images to guide the denoising process.Methods: In this work, two novel post-reconstruction methods for restoring PET images using the subject’s registered T1-weighted MR image, are proposed. The first method is based on a representation of the image using basis functions extracted from T1-weighted MR and filtered PET image. The coefficients for these basis functions are estimated using a sparsity-penalized least squares objective function. The second method is a non-iterative fast method that usesguided kernel filtering in combination with twicing to restore the noisy PET image. When applied after conventional PVE correction, these methods can be considered as voxel-based MR-guided partial volume effect (PVE) correction methods.Results: Using simulation analyses of [18F]FDG PET images of the brain with lesions, the proposed methods are compared to other denoising methods through different figures-of-merit. The results show promising improvements in image quality as well as reduction in bias and variance of the lesions. We also show the application of the second method on real [18F]FDG data.Conclusion: Two methods for restoring PET images were proposed. The methods were evaluated on simulation and real brain images. Most MR-guided PVE correction methods are only based on segmented T1-weighted images and their accuracy is very sensitive to segmentation errors, especially in regions of abnormalities and lesions. However, both proposed methods can use theT1-weighted image without segmentation. The simplicity and the very low computational cost of the second method make it suitable for clinical applications and large data studies. The proposed methods can be naturally extended to PVE correction and denoising of other functional modalitiesusing corresponding anatomical information
Oppositional COMT Val158Met effects on resting state functional connectivity in adolescents and adults
© 2014, The Author(s).Prefrontal dopamine levels are relatively increased in adolescence compared to adulthood. Genetic variation of COMT (COMT Val158Met) results in lower enzymatic activity and higher dopamine availability in Met carriers. Given the dramatic changes of synaptic dopamine during adolescence, it has been suggested that effects of COMT Val158Met genotypes might have oppositional effects in adolescents and adults. The present study aims to identify such oppositional COMT Val158Met effects in adolescents and adults in prefrontal brain networks at rest. Resting state functional connectivity data were collected from cross-sectional and multicenter study sites involving 106 healthy young adults (mean age 24 ± 2.6 years), gender matched to 106 randomly chosen 14-year-olds. We selected the anterior medial prefrontal cortex (amPFC) as seed due to its important role as nexus of the executive control and default mode network. We observed a significant age-dependent reversal of COMT Val158Met effects on resting state functional connectivity between amPFC and ventrolateral as well as dorsolateral prefrontal cortex, and parahippocampal gyrus. Val homozygous adults exhibited increased and adolescents decreased connectivity compared to Met homozygotes for all reported regions. Network analyses underscored the importance of the parahippocampal gyrus as mediator of observed effects. Results of this study demonstrate that adolescent and adult resting state networks are dose-dependently and diametrically affected by COMT genotypes following a hypothetical model of dopamine function that follows an inverted U-shaped curve. This study might provide cues for the understanding of disease onset or dopaminergic treatment mechanisms in major neuropsychiatric disorders such as schizophrenia and attention deficit hyperactivity disorder
Anxiety onset in adolescents : a machine-learning prediction
Publisher Copyright: © 2022, The Author(s).Recent longitudinal studies in youth have reported MRI correlates of prospective anxiety symptoms during adolescence, a vulnerable period for the onset of anxiety disorders. However, their predictive value has not been established. Individual prediction through machine-learning algorithms might help bridge the gap to clinical relevance. A voting classifier with Random Forest, Support Vector Machine and Logistic Regression algorithms was used to evaluate the predictive pertinence of gray matter volumes of interest and psychometric scores in the detection of prospective clinical anxiety. Participants with clinical anxiety at age 18–23 (N = 156) were investigated at age 14 along with healthy controls (N = 424). Shapley values were extracted for in-depth interpretation of feature importance. Prospective prediction of pooled anxiety disorders relied mostly on psychometric features and achieved moderate performance (area under the receiver operating curve = 0.68), while generalized anxiety disorder (GAD) prediction achieved similar performance. MRI regional volumes did not improve the prediction performance of prospective pooled anxiety disorders with respect to psychometric features alone, but they improved the prediction performance of GAD, with the caudate and pallidum volumes being among the most contributing features. To conclude, in non-anxious 14 year old adolescents, future clinical anxiety onset 4–8 years later could be individually predicted. Psychometric features such as neuroticism, hopelessness and emotional symptoms were the main contributors to pooled anxiety disorders prediction. Neuroanatomical data, such as caudate and pallidum volume, proved valuable for GAD and should be included in prospective clinical anxiety prediction in adolescents.Peer reviewe
A multi-model approach to evaluate the role of environmental variability and fishing pressure in sardine fisheries
Understanding the fluctuations in population abundance is a central question in fisheries. Sardine fisheries is of great importance to Portugal and is data-rich and of primary concern to fisheries managers. In Portugal, sub-stocks of Sardina pilchardus (sardine) are found in different regions: the Northwest (IXaCN), Southwest (IXaCS) and the South coast (IXaS-Algarve). Each of these sardine sub-stocks is affected differently by a unique set of climate and ocean conditions, mainly during larval development and recruitment, which will consequently affect sardine fisheries in the short term. Taking this hypothesis into consideration we examined the effects of hydrographic (river discharge), sea surface temperature, wind driven phenomena, upwelling, climatic (North Atlantic Oscillation) and fisheries variables (fishing effort) on S. pilchardus catch rates (landings per unit effort, LPUE, as a proxy for sardine biomass). A 20-year time series (1989-2009) was used, for the different subdivisions of the Portuguese coast (sardine sub-stocks). For the purpose of this analysis a multi-model approach was used, applying different time series models for data fitting (Dynamic Factor Analysis, Generalised Least Squares), forecasting (Autoregressive Integrated Moving Average), as well as Surplus Production stock assessment models. The different models were evaluated, compared and the most important variables explaining changes in LPUE were identified. The type of relationship between catch rates of sardine and environmental variables varied across regional scales due to region-specific recruitment responses. Seasonality plays an important role in sardine variability within the three study regions. In IXaCN autumn (season with minimum spawning activity, larvae and egg concentrations) SST, northerly wind and wind magnitude were negatively related with LPUE. In IXaCS none of the explanatory variables tested was clearly related with LPUE. In IXaS-Algarve (South Portugal) both spring (period when large abundances of larvae are found) northerly wind and wind magnitude were negatively related with LPUE, revealing that environmental effects match with the regional peak in spawning time. Overall, results suggest that management of small, short-lived pelagic species, such as sardine quotas/sustainable yields, should be adapted to a regional scale because of regional environmental variability
Genetic variations within human gained enhancer elements affect human brain sulcal morphology.
The expansion of the cerebral cortex is one of the most distinctive changes in the evolution of the human brain. Cortical expansion and related increases in cortical folding may have contributed to emergence of our capacities for high-order cognitive abilities. Molecular analysis of humans, archaic hominins, and non-human primates has allowed identification of chromosomal regions showing evolutionary changes at different points of our phylogenetic history. In this study, we assessed the contributions of genomic annotations spanning 30 million years to human sulcal morphology measured via MRI in more than 18,000 participants from the UK Biobank. We found that variation within brain-expressed human gained enhancers, regulatory genetic elements that emerged since our last common ancestor with Old World monkeys, explained more trait heritability than expected for the left and right calloso-marginal posterior fissures and the right central sulcus. Intriguingly, these are sulci that have been previously linked to the evolution of locomotion in primates and later on bipedalism in our hominin ancestors
Multiscale structure description of positon Emission tomography difference images
A method is presented here which aims at analyzing Positon Emission Tomography difference images . This method is based on
a explicit description of the structure of the images. Positon Emission Tomography images are used to investigate the functional
organisation of the brain, looking at the cerebral blood flow . The differences between two images from the same subject lead to th e
changes of activity between two particular states . These differences, called "functional activations", are supposed to be specific o f
a particular task . The aim is then to detect functional activations while preserving individual information, unlike classical statistica l
methods which look mainly for the average information across several subjects . We then build a 3-dimensional linear scale-spac e
from the original image. Objects are extracted at each level of scale in a fully-automatic way. Then they are linked across th e
scales to get multi-scale objects in the scale-space . A vector of measures is associated to each of these multi-scale objects in order
to characterize functional activations . We present a short study to determine the relevancy of these measures and the way the y
can be used .Nous présentons ici une méthode d'analyse d'images de différence issues de la Tomographie par Emission de Positons (TEP) qui repose sur une description explicite de la structure de ces images. Les images TEP permettent, par l'intermédiaire du débit sanguin cérébral, de rendre compte de l'état fonctionnel du cerveau. En utilisant la différence entre deux images d'un même sujet, on essaye de déterminer les différences d'activité cérébrale entre deux états. Ces différences sont supposées être spécifiques d'une tâche isolée par la différence entre les deux états, et nous les appellerons « activations fonctionnelles ». L'objectif est donc de caractériser les activations fonctionnelles dans ces images de différence, tout en préservant l'information individuelle propre au sujet, ce qui n'est pas le cas des méthodes statistiques classiques, qui s'intéressent surtout à l'information moyenne sur l'ensemble des sujets. Un espace d'échelles (« scale-space ») linéaire tri-dimensionnel est d'abord construit à partir de l'image de différence originale, puis des objets sont extraits à chaque niveau d'échelle de manière entièrement automatique. ces objets sont ensuites liés dans les échelles pour former d'autres objets dans le scale-space. Des mesures sont alors définies et associées à chacun d'eux, afin de caractériser les activations fonctionnelles. Une étude sur la pertinence des objets définis et l'utilisation possible des mesures associées est présentée
Human subcortical brain asymmetries in 15,847 people worldwide reveal effects of age and sex
The two hemispheres of the human brain differ functionally and structurally. Despite over a century of research, the extent to which brain asymmetry is influenced by sex, handedness, age, and genetic factors is still controversial. Here we present the largest ever analysis of subcortical brain asymmetries, in a harmonized multi-site study using meta-analysis methods. Volumetric asymmetry of seven subcortical structures was assessed in 15,847 MRI scans from 52 datasets worldwide. There were sex differences in the asymmetry of the globus pallidus and putamen. Heritability estimates, derived from 1170 subjects belonging to 71 extended pedigrees, revealed that additive genetic factors influenced the asymmetry of these two structures and that of the hippocampus and thalamus. Handedness had no detectable effect on subcortical asymmetries, even in this unprecedented sample size, but the asymmetry of the putamen varied with age. Genetic drivers of asymmetry in the hippocampus, thalamus and basal ganglia may affect variability in human cognition, including susceptibility to psychiatric disorders
Dermatologic findings in 16 patients with Cockayne syndrome and cerebro-oculo-facial-skeletal syndrome
IMPORTANCE: Cockayne syndrome (CS) and cerebro-oculo-facial-skeletal (COFS) syndrome are autosomal recessive diseases that belong to the family of nucleotide excision repair disorders. Our aim was to describe the cutaneous phenotype of patients with these rare diseases. OBSERVATIONS: A systematic dermatologic examination of 16 patients included in a European study of CS was performed. The patients were aged 1 to 28 years. Six patients (38%) had mutations in the Cockayne syndrome A (CSA) gene, and the remaining had Cockayne syndrome B (CSB) gene mutations. Fourteen patients were classified clinically as having CS and 2 as having COFS syndrome. Photosensitivity was present in 75% of the patients and was characterized by sunburn after brief sun exposure. Six patients developed symptoms after short sun exposure through a windshield. Six patients had pigmented macules on sun-exposed skin, but none developed a skin neoplasm. Twelve patients (75%) displayed cyanotic acral edema of the extremities. Eight patients had nail dystrophies and 7 had hair anomalies. CONCLUSIONS AND RELEVANCE: The dermatologic findings of 16 cases of CS and COFS syndrome highlight the high prevalence of photosensitivity and hair and nail disorders. Cyanotic acral edema was present in 75% of our patients, a finding not previously reported in CS
Marker-assisted introgression of the salinity tolerance locus Saltol in temperate japonica rice
Background Rice is one of the most salt sensitive crops at seedling, early vegetative and reproductive stages. Varieties
with salinity tolerance at seedling stage promote an efficient growth at early stages in salt affected soils, leading
to healthy vegetative growth that protects crop yield. Saltol major QTL confers capacity to young rice plants growing
under salt condition by maintaining a low Na+/
K+ molar ratio in the shoots.
Results Marker-assisted backcross (MABC) procedure was adopted to transfer Saltol locus conferring salt tolerance
at seedling stage from donor indica IR64-Saltol to two temperate japonica varieties, Vialone Nano and Onice. Forward
and background selections were accomplished using polymorphic KASP markers and a final evaluation of genetic
background recovery of the selected lines was conducted using 15,580 SNP markers obtained from Genotyping by
Sequencing. Three MABC generations followed by two selfing, allowed the identification of introgression lines achieving
a recovery of the recurrent parent (RP) genome up to 100% (based on KASP markers) or 98.97% (based on GBS).
Lines with highest RP genome recovery (RPGR) were evaluated for agronomical-phenological traits in field under nonsalinized
conditions. VN1, VN4, O1 lines were selected considering the agronomic evaluations and the RPGR% results
as the most interesting for commercial exploitation. A physiological characterization was conducted by evaluating
salt tolerance under hydroponic conditions. The selected lines showed lower standard evaluation system (SES) scores:
62% of VN4, and 57% of O1 plants reaching SES 3 or SES 5 respectively, while only 40% of Vialone Nano and 25% of
Onice plants recorded scores from 3 to 5, respectively. VN1, VN4 and O1 showed a reduced electrolyte leakage values,
and limited negative effects on relative water content and shoot/root fresh weight ratio.
Conclusion The Saltol locus was successfully transferred to two elite varieties by MABC in a time frame of three years.
The application of background selection until BC3F3
allowed the selection of lines with a RPGR up to 98.97%. Physiological
evaluations for the selected lines indicate an improved salinity tolerance at seedling stage. The results supported
the effectiveness of the Saltol locus in temperate japonica and of the MABC procedure for recovering of the RP
favorable traits
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