Niche evolution reveals disparate signatures of speciation in the ‘great speciator’ (white‐eyes, Aves: Zosterops )

ACKNOWLEDGEMENTS J.O.E. and L.L. coordinated and secured project funding with the support from J.S.C.; we thank AT Peterson and CH Graham and two reviewers for critical feedback on earlier stages of the manuscript. The project was funded by the Research Foundation – Flanders (FWO; 1527918N & G042318N). J.O.E. received additional funds by an FWO Postdoctoral Fellowship (12G4317N). The authors declare no conflict of interest. No permits were needed to conduct the re- search presented here. DATA AVAILABILITY STATEMENT All data are available from open source platforms. Raw GBIF.org occurrence data used for this work (as accessed on 21st October 2016) can be accessed through GBIF Occurrence Download http://doi.org/10.15468/dl.erwqs6. We have deposited the prepared data used for this work on FigShare accessible through https://doi.org/10.6084/m9.figshare.13042031.v1 as well as R scripts for data analysis in a GitHub repository accessible through https://github.com/JOEngler/ZostiNicheEvol.Peer reviewedPublisher PD

Are species occurrence data in global online repositories fit for modeling species distributions? The case of the Global Biodiversity Information Facility (GBIF). Final Report of the Task Group on GBIF Data Fitness for Use in Distribution Modelling.

Primary Biodiversity Data (PBD) are defined as the basic attributes of observations or records of the occurrences of species. PBD is a fundamental concept of biodiversity informatics since it is substantial in quantity and provides the links to organize other large and independent bodies of data concerning species (= taxonomic information) and environments. In fact, PBD is at the core of the exploding field of biodiversity informatics, which in some sense now underlies biogeography, macroecology, landscape ecology and several other subdisciplines of biology. A principal - and rapidly growing - class of research that can be performed using PBD is the estimation of a species' environmental requirements and the projection of these in both environmental and geographic spaces to estimate niches or distributional ranges, generally by using models of ecological niches and species' distributions (often called ENMs or SDMs, respectively). The largest point of access to PBD in the world is the Global Biodiversity Information Facility (GBIF), and hundreds of papers have now used GBIF-mediated data to fit and apply ENM/SDM. Experience has shown that GBIF, like other aggregated data research infrastructures, holds a number of potential problems related to incomplete or difficult access to all the fields in its schema, inconsistent information among fields, or simply erroneous or incomplete data. These drawbacks complicate ENM/SDM analyses considerably, and detract from the enormous scientific value of this information storehouse. Three overlapping communities participate in GBIF's data process: providers (museums, herbaria, and observer's networks), users (scientists, analysts working for governments, NGOs or the private sector, the public) and the technical staff managing the huge databases, web services and servers at GBIF. Each can play a different role in fixing data issues of GBIF. Our main recommendations for the GBIF Secretariat are the following: GBIF.org should serve indicators of precision, quality, and uncertainty of data that can be calculated practically, and preferably "on the fly", as well as summaries and metrics of completeness of inventories, at scales and for regions defined by the user. The summaries should display maps and graphs of completeness by region, time-period and taxa. The implementation of the GBIF information resource should go beyond unique identifiers of queries (DOIs for downloads, including the capability to re-run queries, http://www.gbif.org/publishing-data/summary#supporteddatasettypes), and to include identifiers of the individual data that make up the queried data. GBIF.org should include applications or functionalities enabling users to annotate errors or problems, and communicate those changes directly to providers, as it may be practical and appropriate. This point may need to be discussed with providers. A procedure enabling users to make accessible versions of their databases that have been improved and annotated should be supported, but this functionality should not lose the vital tie back to the original data records and the actual data provider. GBIF should partner with and/or support initiatives to do more for training and guiding users on the proper use of the data; such initiatives should incorporate actual expert uses in ENM/SDM to assure that current best practices are followed

The effects of r-process heating on fall-back accretion in compact object mergers

We explore the effects of r-process nucleosynthesis on fall-back accretion in neutron star(NS)-NS and black hole-NS mergers, and the resulting implications for short-duration gamma-ray bursts (GRBs). Though dynamically important, the energy released during the r-process is not yet taken into account in merger simulations. We use a nuclear reaction network to calculate the heating (due to beta-decays and nuclear fission) experienced by material on the marginally-bound orbits nominally responsible for late-time fall-back. Since matter with longer orbital periods t_orb experiences lower densities, for longer periods of time, the total r-process heating rises rapidly with t_orb, such that material with t_orb > 1 seconds can become completely unbound. Thus, r-process heating fundamentally changes the canonical prediction of an uninterrupted power-law decline in the fall-back rate dM/dt at late times. When the timescale for r-process to complete is > 1 second, the heating produces a complete cut-off in fall-back accretion after ~ 1 second; if robust, this would imply that fall-back accretion cannot explain the late-time X-ray flaring observed following some short GRBs. However, for a narrow, but physically plausible, range of parameters, fall-back accretion can resume after ~ 10 s, despite having been strongly suppressed for ~ 1-10 s after the merger. This suggests the intriguing possibility that the gap observed between the prompt and extended emission in short GRBs is a manifestation of r-process heating.Comment: 7 pages; 4 figures; submitted to MNRA

Electron fraction constraints based on Nuclear Statistical Equilibrium with beta equilibrium

The electron-to-nucleon ratio or electron fraction is a key parameter in many astrophysical studies. Its value is determined by weak-interaction rates that are based on theoretical calculations subject to several nuclear physics uncertainties. Consequently, it is important to have a model independent way of constraining the electron fraction value in different astrophysical environments. Here we show that nuclear statistical equilibrium combined with beta equilibrium can provide such a constraint. We test the validity of this approximation in presupernova models and give lower limits for the electron fraction in type Ia supernova and accretion-induced collapse.Comment: 10 pages, 9 figures, Astronomy and Astrophysic

In situ observation of stress relaxation in epitaxial graphene

Upon cooling, branched line defects develop in epitaxial graphene grown at high temperature on Pt(111) and Ir(111). Using atomically resolved scanning tunneling microscopy we demonstrate that these defects are wrinkles in the graphene layer, i.e. stripes of partially delaminated graphene. With low energy electron microscopy (LEEM) we investigate the wrinkling phenomenon in situ. Upon temperature cycling we observe hysteresis in the appearance and disappearance of the wrinkles. Simultaneously with wrinkle formation a change in bright field imaging intensity of adjacent areas and a shift in the moire spot positions for micro diffraction of such areas takes place. The stress relieved by wrinkle formation results from the mismatch in thermal expansion coefficients of graphene and the substrate. A simple one-dimensional model taking into account the energies related to strain, delamination and bending of graphene is in qualitative agreement with our observations.Comment: Supplementary information: S1: Photo electron emission microscopy and LEEM measurements of rotational domains, STM data of a delaminated bulge around a dislocation. S2: Movie with increasing brightness upon wrinkle formation as in figure 4. v2: Major revision including new experimental dat

Electromagnetic Counterparts of Compact Object Mergers Powered by the Radioactive Decay of R-process Nuclei

The most promising astrophysical sources of kHz gravitational waves (GWs) are the inspiral and merger of binary neutron star(NS)/black hole systems. Maximizing the scientific return of a GW detection will require identifying a coincident electro-magnetic (EM) counterpart. One of the most likely sources of isotropic EM emission from compact object mergers is a supernova-like transient powered by the radioactive decay of heavy elements synthesized in ejecta from the merger. We present the first calculations of the optical transients from compact object mergers that self-consistently determine the radioactive heating by means of a nuclear reaction network; using this heating rate, we model the light curve with a one dimensional Monte Carlo radiation transfer calculation. For an ejecta mass ~1e-2 M_sun[1e-3 M_sun] the resulting light curve peaks on a timescale ~ 1 day at a V-band luminosity nu L_nu ~ 3e41[1e41] ergs/s (M_V = -15[-14]); this corresponds to an effective "f" parameter ~3e-6 in the Li-Paczynski toy model. We argue that these results are relatively insensitive to uncertainties in the relevant nuclear physics and to the precise early-time dynamics and ejecta composition. Due to the rapid evolution and low luminosity of NS merger transients, EM counterpart searches triggered by GW detections will require close collaboration between the GW and astronomical communities. NS merger transients may also be detectable following a short-duration Gamma-Ray Burst or "blindly" with present or upcoming optical transient surveys. Because the emission produced by NS merger ejecta is powered by the formation of rare r-process elements, current optical transient surveys can directly constrain the unknown origin of the heaviest elements in the Universe.Comment: 14 pages, 7 figures; accepted to MNRAS; title changed to highlight r-process connection and new figure added

Svestka's Research: Then and Now

Zdenek Svestka's research work influenced many fields of solar physics, especially in the area of flare research. In this article I take five of the areas that particularly interested him and assess them in a "then and now" style. His insights in each case were quite sound, although of course in the modern era we have learned things that he could not readily have envisioned. His own views about his research life have been published recently in this journal, to which he contributed so much, and his memoir contains much additional scientific and personal information (Svestka, 2010).Comment: Invited review for "Solar and Stellar Flares," a conference in honour of Prof. Zden\v{e}k \v{S}vestka, Prague, June 23-27, 2014. This is a contribution to a Topical Issue in Solar Physics, based on the presentations at this meeting (Editors Lyndsay Fletcher and Petr Heinzel

On-Surface Synthesis and Characterization of a High-Spin Aza-[5]-Triangulene

Triangulenes are open-shell triangular graphene flakes with total spin increasing with their size. In the last years, on-surface-synthesis strategies have permitted fabricating and engineering triangulenes of various sizes and structures with atomic precision. However, direct proof of the increasing total spin with their size remains elusive. In this work, we report the combined in-solution and on-surface synthesis of a large nitrogen-doped triangulene (aza-[5]-triangulene) and the detection of its high spin ground state on a Au(111) surface. Bond-resolved scanning tunneling microscopy images uncovered radical states distributed along the zigzag edges, which were detected as weak zero-bias resonances in scanning tunneling spectra. These spectral features reveal the partial Kondo screening of a high spin state. Through a combination of several simulation tools, we find that the observed distribution of radical states is explained by a quintet ground state (S = 2), instead of the expected quartet state (S = 3/2), confirming the positively charged state of the molecule on the surface. We further provide a qualitative description of the change of (anti)aromaticity introduced by N-substitution, and its role in the charge stabilization on a surface, resulting in a S = 2 aza-[5]-triangulene on Au(111).Comment: 8 pages with 4 figure

Consistent phenological shifts in the making of a biodiversity hotspot: the Cape flora

Background The best documented survival responses of organisms to past climate change on short (glacial-interglacial) timescales are distributional shifts. Despite ample evidence on such timescales for local adaptations of populations at specific sites, the long-term impacts of such changes on evolutionary significant units in response to past climatic change have been little documented. Here we use phylogenies to reconstruct changes in distribution and flowering ecology of the Cape flora - South Africa's biodiversity hotspot - through a period of past (Neogene and Quaternary) changes in the seasonality of rainfall over a timescale of several million years. Results Forty-three distributional and phenological shifts consistent with past climatic change occur across the flora, and a comparable number of clades underwent adaptive changes in their flowering phenology (9 clades; half of the clades investigated) as underwent distributional shifts (12 clades; two thirds of the clades investigated). Of extant Cape angiosperm species, 14-41% have been contributed by lineages that show distributional shifts consistent with past climate change, yet a similar proportion (14-55%) arose from lineages that shifted flowering phenology. Conclusions Adaptive changes in ecology at the scale we uncover in the Cape and consistent with past climatic change have not been documented for other floras. Shifts in climate tolerance appear to have been more important in this flora than is currently appreciated, and lineages that underwent such shifts went on to contribute a high proportion of the flora's extant species diversity. That shifts in phenology, on an evolutionary timescale and on such a scale, have not yet been detected for other floras is likely a result of the method used; shifts in flowering phenology cannot be detected in the fossil record

Models and Observations of Sunspot Penumbrae

The mysteries of sunspot penumbrae have been under an intense scrutiny for the past 10 years. During this time, some models have been proposed and refuted, while the surviving ones had to be modified, adapted and evolved to explain the ever-increasing array of observational constraints. In this contribution I will review two of the present models, emphasizing their contributions to this field, but also pinpointing some of their inadequacies to explain a number of recent observations at very high spatial resolution. To help explaining these new observations I propose some modifications to each of them. These modifications bring those two seemingly opposite models closer together into a general picture that agrees well with recent 3D magneto-hydrodynamic simulations.Comment: 9 pages, 1 color figure. Review talk to appear in the proceedings of the International Workshop of 2008 Solar Total Eclipse: Solar Magnetism, Corona and Space Weather--Chinese Space Solar Telescope Scienc