Looking for the mechanism of arsenate respiration of Fusibacter sp. strain 3D3, independent of ArrAB

The literature has reported the isolation of arsenate-dependent growing microorganisms which lack a canonical homolog for respiratory arsenate reductase, ArrAB. We recently isolated an arsenate-dependent growing bacterium from volcanic arsenic-bearing environments in Northern Chile, Fusibacter sp. strain 3D3 (Fas) and studied the arsenic metabolism in this Gram-positive isolate. Features of Fas deduced from genome analysis and comparative analysis with other arsenate-reducing microorganisms revealed the lack of ArrAB coding genes and the occurrence of two arsC genes encoding for putative cytoplasmic arsenate reductases named ArsC-1 and ArsC-2. Interestingly, ArsC-1 and ArsC-2 belong to the thioredoxin-coupled family (because of the redox-active disulfide protein used as reductant), but they conferred differential arsenate resistance to the E. coli WC3110 ΔarsC strain. PCR experiments confirmed the absence of arrAB genes and results obtained using uncouplers revealed that Fas growth is linked to the proton gradient. In addition, Fas harbors ferredoxin-NAD+ oxidoreductase (Rnf) and electron transfer flavoprotein (etf) coding genes. These are key molecular markers of a recently discovered flavin-based electron bifurcation mechanism involved in energy conservation, mainly in anaerobic metabolisms regulated by the cellular redox state and mostly associated with cytoplasmic enzyme complexes. At least three electron-bifurcating flavoenzyme complexes were evidenced in Fas, some of them shared in conserved genomic regions by other members of the Fusibacter genus. These physiological and genomic findings permit us to hypothesize the existence of an uncharacterized arsenate-dependent growth metabolism regulated by the cellular redox state in the Fusibacter genus.Fil: Acosta Grinok, Mauricio. Universidad Católica del Norte; ChileFil: Vázquez, Susana Claudia. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay. Instituto de Nanobiotecnología. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Instituto de Nanobiotecnología; Argentina. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Departamento de Microbiología, Inmunología y Biotecnología. Cátedra de Microbiología Industrial y Biotecnología; ArgentinaFil: Guiliani, Nicolás. Universidad de Chile; ChileFil: Marín, Sabrina. Universidad Católica del Norte; ChileFil: Demergasso, Cecilia. Universidad Católica del Norte; Chil

Investigating microbial diversity and UV radiation impact at the high-altitude lake Aguas Calientes, Chile

The High-Lakes Project is funded by the NAI and explores the highest perennial volcanic lakes on Earth in the Bolivian and Chilean Andes, including several lakes ∼6,000 m elevation. These lakes represent an opportunity to study the evolution of microbial organisms in relatively shallow waters not providing substantial protection against UV radiation. Aguas Calientes (5,870 m) was investigated (November 2006) and samples of water and sediment collected at 1, 3, 5, and 10 cm depth. An Eldonet UV dosimeter positioned on the shore records UV radiation and temperature, and is logging data year round. A UV SolarLight sensor allowed acquisition of point measurements in all channels at the time of the sampling. UVA, UVB, and PAR peaks between 11:00 am and 1:00 pm reached 7.7 mW/cm2, 48.5 μW/cm2, and 511 W/m 2, respectively. The chemical composition of the water sample was analyzed. DNA was extracted and DGGE analyses with bacterial and archaeal 16S fragments were performed to describe microbial diversity. Antibiotic resistances were established previously in similar environments in Argentine Andean wetlands. In order to determine these resistances in our samples, they were inoculated onto LB and R2A media and onto R2A medium containing either chloramphenicol, ampicillin or tetracycline. Bacterial was higher than archeal cell number determined by RT-PCR in all the samples, reaching maximum total values of 5×105 cell mL-1. DGGE results from these samples and Licancabur summit lake (5,916 m) samples were also compared. Eight antibiotic-resistant Gram negative strains have been isolated with distinct resistance patterns.Fil: Escudero, Lorena. Centro de Investigación Científica y Tecnológica para la Minería; ArgentinaFil: Chong, Guillermo. Centro de Investigación Científica y Tecnológica para la Minería; ArgentinaFil: Demergasso, Cecilia. Universidad Católica de Chile; ChileFil: Farias, Maria Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Cabrol, Nathalie A.. Nasa Ames Research Center; Estados UnidosFil: Grin, Edmond. Nasa Ames Research Center; Estados UnidosFil: Minkley Jr., Edwin. University of Carnegie Mellon; Estados UnidosFil: Yu, Youngeob. University of Carnegie Mellon; Estados Unido

On the Origin of saline compounds in acidic salt flats (Central Andean Altiplano)

Volcanism, aridity, and endorheism converge in the central zone of the Andean Cordillera (Bolivia, Chile, and Argentina, between latitudes 19◦ S and 27◦ S). The Gorbea and Ignorado basins are pristine Andean sites in which the transfer of saline compounds from endogenous to exogenous environments occurs. In this area the regional volcanic rocks display strong argillic alteration, with Al and Fe (alunite, jarosite) and Ca (gypsum/ anhydrite) sulfates. Native sulfur is also present in paleosolfataras. The Gorbea salt flat is covered by a discontinuous layer of selenitic gypsum of varying thickness (maximum 2 m). The discontinuity of the layer as well as its variable thickness is due to the fact that the original bed has been partially destroyed mainly by dissolution but also by deflation. Saline pond brines (Cl-SO4-Na [-Mg]) are strongly acidic reaching pH values lower than 2. The high temperature processes that caused the hydrothermal alteration in the Gorbea and Ignorado basins occurred in the Miocene (14 Ma) coinciding with a wet period that reached 9 Ma. Subsequently, the weather up to 120 ka was predominantly hyper-arid with a less arid interval between 6 and 3 Ma and the epithermal sulfates were recycled in saline lakes mainly in the Late Pleistocene wet period (120 to 11.7 ka). Evolution into the current salt flat occurred in the mid-early Holocene (11.7 to 4 ka), through a salt lake that first evolved into a 'salina' environment that gave rise to a selenitic gypsum layer (6.4 ka), and later to the final dryness. The highest values of δ34SVCDT and δ18OVSMOW found in the selenitic gypsum layer (+20¿ and + 28¿, respectively) show that the recycling was locally produced, mainly from isotopically heavier hypogene sulfates. The δ18OVSMOW (and less clearly, δ34SVCDT) values are higher in the basal part of the gypsum crust (about +27¿), which suggests an initial hypogene source that decreased towards the top due to mixing with supergene sulfate inputs. Bacterial activity, although catalyzing the supergene reactions, does not appear to have had a significant influence on the isotopic composition of sulfates. The crystallization water of the gypsum is isotopically lighter in the basal part of the selenitic layer (δ18OVSMOW ≈ +7¿), which indicates that the brines of the saline lake were still poorly evolved. These brines evolved to heavier (approximately +13¿) towards the top of the layer and towards the center of the salt flat, before the final drying. The partial destruction of the selenitic gypsum layer occurred during more recent wet periods over the last 4 ka that have been identified in wetlands and lakes in the Central Andean area. Isotopic data (δ34SVCDT and δ18OVSMOW) clearly suggest that sulfates in the saline compounds and evaporites from the entire Central Andean arid area have mostly a thermal origin with contributions from atmospheric deposition and locally, near the Pacific coast, marine aerosols. In addition, the great difference in altitude (approximately 3000 m) between the Altiplano and the lands located to the west, up to the Pacific coast, generated a constant flow of groundwater containing saline compounds that gave rise, to the salt flats of the basins located in lower topographic areas (Atacama, Punta Negra, Hilaricos, Soledad, Tamarugal, Salar de Pintados, Salar Grande) throughout the Cenozoic. Such salt flats have lower δ34SVCDT and δ18OVSMOW valuesmostly for two reasons: the secular mixing with atmospheric sulfate, and the isotope fractionation related to repetitive dissolution (or leaking)¿migration¿precipitation along the hydraulic gradient, a process that occurred throughout a large part of the Cenozoic. The last process also explains that the evaporites of some of these salt flats (e.g., Salar de Atacama, Salar Grande) display very high Cl/SO4 ratios

Diversity of Bacteroidetes in high altitude saline evaporitic basins in northern Chile

The phylum Bacteroidetes represents one of the most abundant bacterial groups of marine and freshwater bacterioplankton. We investigated the diversity of Bacteroidetes in water and sediment samples from three evaporitic basins located in the highlands of northern Chile. We used both 16S rRNA gene clone libraries created with targeted Bacteroidetes-specific primers and separation of specifically amplified gene fragments by denaturing gradient gel electrophoresis (DGGE). DGGE analysis revealed a reduced richness of these organisms in samples from Salar de Huasco (two to four DGGE bands) increasing in Salar de Ascotán (two to seven DGGE bands) and Laguna Tebenquiche at Salar de Atacama (four to eight DGGE bands). Cluster analysis (WPGMA) of DGGE bands showed that bands from Salar de Huasco and Salar de Ascotán grouped together and samples from Salar de Atacama formed separate clusters in water and sediment samples, reflecting different Bacteroidetes communities between sites. Most of the sequences analyzed belonged to the family Flavobacteriaceae and clustered with the genera Psychroflexus, Gillisia, Maribacter, Muricauda, Flavobacterium, and Salegentibacter. The most abundant phylotype was highly related to Psychroflexus spp. and was recovered from all three study sites. The similarity of the analyzed sequences with their closest relatives in GenBank was typically <97% and notably lower when compared with type strains, demonstrating the unique character of these sequences. Culture efforts will be necessary to get a better description of the diversity of this group in saline evaporitic basins of northern Chile

Draft genome sequence of chloride-tolerant Leptospirillum ferriphilum Sp-Cl from industrial bioleaching operations in northern Chile

Indexación: Web of Science; PubMedLeptospirillum ferriphilum Sp-Cl is a Gram negative, thermotolerant, curved, rod- shaped bacterium, isolated from an industrial bioleaching operation in northern Chile, where chalcocite is the major copper mineral and copper hydroxychloride atacamite is present in variable proportions in the ore. This strain has unique features as compared to the other members of the species, namely resistance to elevated concentrations of chloride, sulfate and metals. Basic microbiological features and genomic properties of this biotechnologically relevant strain are described in this work. The 2,475,669 bp draft genome is arranged into 74 scaffolds of 74 contigs. A total of 48 RNA genes and 2,834 protein coding genes were predicted from its annotation; 55 % of these were assigned a putative function. Release of the genome sequence of this strain will provide further understanding of the mechanisms used by acidophilic bacteria to endure high osmotic stress and high chloride levels and of the role of chloride-tolerant iron-oxidizers in industrial bioleaching operations.https://standardsingenomics.biomedcentral.com/articles/10.1186/s40793-016-0142-

Cyanobacterial diversity in Salar de Huasco, a high altitude saline wetland in Northern Chile, are highly similar to Antarctic cyanobacteria

The diversity of Cyanobacteria in water and sediment samples from four representative sites of the Salar de Huasco was examined using denaturing gradient gel electrophoresis and analysis of clone libraries of 16S rRNA gene PCR products. Salar de Huasco is a high altitude (3800 m altitude) saline wetland located in the Chilean Altiplano. We analyzed samples from a tributary stream (H0) and three shallow lagoons (H1, H4, H6) that contrasted in their physicochemical conditions and associated biota. Seventy-eight phylotypes were identified in a total of 268 clonal sequences deriving from seven clone libraries of water and sediment samples. Oscillatoriales were frequently found in water samples from sites H0, H1 and H4 and in sediment samples from sites H1 and H4. Pleurocapsales were found only at site H0, while Chroococcales were recovered from sediment samples of sites H0 and H1, and from water samples of site H1. Nostocales were found in sediment samples from sites H1 and H4, and water samples from site H1 and were largely represented by sequences highly similar to Nodularia spumigena. We suggest that cyanobacterial communities from Salar de Huasco are unique - they include sequences related to others previously described from the Antarctic, along with others from diverse, but less extreme environments