Pourquoi sélectionner de nouvelles variétés de blé tendre adaptées à l’agriculture biologique ?

International audienceLongtemps marginale en France, l’agriculture biologique est un secteur émergent à fort potentiel : les objectifs fixés par la loi Grenelle I ambitionnaient de faire passer les surfaces cultivées en agriculture biologique de 2% de la SAU française à 6% en 2012 puis de franchir un nouveau palier avec une couverture de 20% de la SAU en 2020. Même si en réalité c’est seulement 3% de la SAU qui est actuellement cultivée en agriculture biologique, les recherches consacrées à ce domaine, dont le cahier des charges interdit le recours aux produits de la chimie de synthèse, permettent d’anticiper le probable fort renchérissement du coût de l’énergie fossile (pic pétrolier).Ce travail pionnier de réduction des engrais et des pesticides sera alors utile à l’ensemble de l’agriculture. Tous les systèmes de culture ont bénéficié des progrès de la sélection végétale excepté l’agriculture biologique, parent pauvre de l’amélioration génétique. En effet la sélection s’est faite depuis 50 ans pour des itinéraires techniques artificialisés pour lesquels la fertilisation azotée minérale est abondante et où les herbicides sont utilisés pour lutter contre les adventices des cultures. Elle a conduit à l’obtention de variétés à paille courte donc peu concurrentielles vis-à-vis des mauvaises herbes et qui peinent en conditions de disponibilités réduites en azote, conditions rencontrées en agriculture biologique. La sélection variétale sur des critères adaptés à ces milieux aux contraintes fortes se justifie. Nous présenterons pourquoi elle peut être porteuse d’enseignements et discuterons de sa possible évolution au regard des premiers résultats obtenus

Geochemical and Thermodinamic Modeling of Segara Anak Lake and the 2009 Eruption of Rinjani Volcano, Lombok, Indonesia

DOI: 10.17014/ijog.v5i4.106Rinjani is the second highest volcano in Indonesia with an elevation of 3726 m above sea level. The steep and highest cone of Rinjani consists mainly of loose pyroclastic ejecta and contains a crater with a few solfataras. The West of this cone is Segara Anak caldera. The western side of the caldera is occupied by a 230 m deep lake, covering an area of 11 km² and its volume was (before the 2009 eruption) estimated 1.02 km3. This is probably the largest hot volcanic lake in the world.The lake water is neutral (pH: 7-8) and its chemistry dominated by chlorides and sulfates with a relatively high TDS (Total Dissolved Solids: 2640 mg/l). This unusual TDS as well as the lake surface temperatures (20 - 22°C) well above ambient temperatures (14 - 15°C) for this altitude, reflect a strong input of hydrothermal fluids. Numerous hot springs are located along the shore at the foot of Barujari volcanic cone. Bathymetric profiles show also several areas with columns of gas bubbles escaping from the lake floor indicating a significant discharge of CO gas into the lake. The mass and energy balance model of Rinjani Crater Lake produce total heat lost value on the average of 1700 MW. Most of the heating periods of the lake occurred when the heat released by the surface of the lake to the atmosphere was lower than the heat supplied from the hydrothermal system. Peaks of heat losses correspond to period of strong winds. Crater lake monitoring can provide a basic information about deep magmatic activity and surface processes that occur in the volcano. The monitoring also contributes to predict the next eruption in order to improve mitigation of volcanic eruption. Precursory signals of the May 2009 eruption can be seen from significant changes in the temperature and chemistry of some of the hot springs, the increase of Fe concentrations in spring #54, chemical plume of low pH and dissolved oxygen, acidification of Segara Anak Lake, and increasing of lake surface temperatures. The new lava flow from May - August 2009 eruption covers an area of 650,000 m2. The shoreline was significantly modified by the entry of lava into Segara Anak Lake. The area of the lake is reduced by 460,000 m2

What breeding strategy(ies) should be carry up for organic winter wheat? Results and prospects from a long-term comparison with low input variety trials

Breeding varieties adapted to various organic farming conditions is one solution, among others, to increase yields and improve organic winter bread wheat quality. From 2004 to 2011, INRA winter wheat breeders have conducted variety trials in three contrasting agro-climatic regions across north-west France to test the relative response of 25 to 30 diversified genotypes when cultivated in low input (FI) and organic (AB) conditions. The comparison of 17 paired management trials showed the relevance of low input conditions to identify genotypes adapted to organic farming conditions for yield and protein content. Such a selection environment is useful also to screen “GPD+” (positive Grain Protein Deviation) genotypes with better nutrient use efficiency. In contrast, our results highlighted the need to evaluate genotypes baking quality in organic conditions in which bread making ability is frequently lost

Upgrading of the decision-making process for system development

The planning horizon for a system development planner is long and a system planner must take into account potential changes to generation capacity and demand during that horizon. The uncertainties that affect system development are greater than those that apply, for example, in system operations. Thus, it is important to build up a credible set of operating states that is informed by various uncertainties and adequately represents the range of conditions that might reasonably be expected to arise. The next step in the system development process is to assess these operating states for system operability. If a power system is not operable on some (probable) operating states, then it identifies a potential need for investment in the system. However, given the number and range of uncertainties relevant to system development, pragmatic approaches must also be developed allowing their assessment. In this report, a comprehensive system development approach is presented

HPV infection and number of lifetime sexual partners are strong predictors for ‘natural’ regression of CIN 2 and 3

The aim of this paper was to evaluate the factors that predict regression of untreated CIN 2 and 3. A total of 93 patients with colposcopic persistent CIN 2 and 3 lesions after biopsy were followed for 6 months. Human papillomavirus (HPV) types were determined by polymerase chain reaction at enrolment. We analysed the biologic and demographic predictors of natural regression using univariate and multivariate methods. The overall regression rate was 52% (48 out of 93), including 58% (22 out of 38) of CIN 2 and 47% (26 out of 55) of CIN 3 lesions (P=0.31 for difference). Human papillomavirus was detected in 84% (78 out of 93) of patients. In univariate analysis, 80% (12 out of 15) of lesions without HPV regressed compared to 46% (36 out of 78) of lesions with HPV infection (P=0.016). Women without HPV and those who had a resolution of HPV had a four-fold higher chance of regression than those with persistent HPV (relative odds=3.5, 95% CI=1.4-8.6). Women with five or fewer lifetime sexual partners had higher rates of regression than women with more than five partners (P=0.003). In multivariate analysis, HPV status and number of sexual partners remained as significant independent predictors of regression. In conclusion, HPV status and number of lifetime sexual partners were strongly predictive of regression of untreated CIN 2 and 3

Phase II study of preoperative radiation plus concurrent daily tegafur-uracil (UFT) with leucovorin for locally advanced rectal cancer

<p>Abstract</p> <p>Background</p> <p>Considerable variation in intravenous 5-fluorouracil (5-FU) metabolism can occur due to the wide range of dihydropyrimidine dehydrogenase (DPD) enzyme activity, which can affect both tolerability and efficacy. The oral fluoropyrimidine tegafur-uracil (UFT) is an effective, well-tolerated and convenient alternative to intravenous 5-FU. We undertook this study in patients with locally advanced rectal cancer to evaluate the efficacy and tolerability of UFT with leucovorin (LV) and preoperative radiotherapy and to evaluate the utility and limitations of multicenter staging using pre- and post-chemoradiotherapy ultrasound. We also performed a validated pretherapy assessment of DPD activity and assessed its potential influence on the tolerability of UFT treatment.</p> <p>Methods</p> <p>This phase II study assessed preoperative UFT with LV and radiotherapy in 85 patients with locally advanced T3 rectal cancer. Patients with potentially resectable tumors received UFT (300 mg/m/²/day), LV (75 mg/day), and pelvic radiotherapy (1.8 Gy/day, 45 Gy total) 5 days/week for 5 weeks then surgery 4-6 weeks later. The primary endpoints included tumor downstaging and the pathologic complete response (pCR) rate.</p> <p>Results</p> <p>Most adverse events were mild to moderate in nature. Preoperative grade 3/4 adverse events included diarrhea (n = 18, 21%) and nausea/vomiting (n = 5, 6%). Two patients heterozygous for dihydropyrimidine dehydrogenase gene (<it>DPYD</it>) experienced early grade 4 neutropenia (variant IVS14+1G > A) and diarrhea (variant 2846A > T). Pretreatment ultrasound TNM staging was compared with postchemoradiotherapy pathology TN staging and a significant shift towards earlier TNM stages was observed (p < 0.001). The overall downstaging rate was 42% for primary tumors and 44% for lymph nodes. The pCR rate was 8%. The sensitivity and specificity of ultrasound for staging was poor. Anal sphincter function was preserved in 55 patients (65%). Overall and recurrence-free survival at 3 years was 86.1% and 66.7%, respectively. Adjuvant chemotherapy was administered to 36 node-positive patients (mean duration 118 days).</p> <p>Conclusion</p> <p>Preoperative chemoradiotherapy using UFT with LV plus radiotherapy was well tolerated and effective and represents a convenient alternative to 5-FU-based chemoradiotherapy for the treatment of resectable rectal cancer. Pretreatment detection of DPD deficiency should be performed to avoid severe adverse events.</p

Contribution of copy number variants to schizophrenia from a genome-wide study of 41,321 subjects

Copy number variants (CNVs) have been strongly implicated in the genetic etiology of schizophrenia (SCZ). However, genome-wide investigation of the contribution of CNV to risk has been hampered by limited sample sizes. We sought to address this obstacle by applying a centralized analysis pipeline to a SCZ cohort of 21,094 cases and 20,227 controls. A global enrichment of CNV burden was observed in cases (OR=1.11, P=5.7×10−15), which persisted after excluding loci implicated in previous studies (OR=1.07, P=1.7 ×10−6). CNV burden was enriched for genes associated with synaptic function (OR = 1.68, P = 2.8 ×10−11) and neurobehavioral phenotypes in mouse (OR = 1.18, P= 7.3 ×10−5). Genome-wide significant evidence was obtained for eight loci, including 1q21.1, 2p16.3 (NRXN1), 3q29, 7q11.2, 15q13.3, distal 16p11.2, proximal 16p11.2 and 22q11.2. Suggestive support was found for eight additional candidate susceptibility and protective loci, which consisted predominantly of CNVs mediated by non-allelic homologous recombination

No Reliable Association between Runs of Homozygosity and Schizophrenia in a Well-Powered Replication Study

It is well known that inbreeding increases the risk of recessive monogenic diseases, but it is less certain whether it contributes to the etiology of complex diseases such as schizophrenia. One way to estimate the effects of inbreeding is to examine the association between disease diagnosis and genome-wide autozygosity estimated using runs of homozygosity (ROH) in genome-wide single nucleotide polymorphism arrays. Using data for schizophrenia from the Psychiatric Genomics Consortium (n = 21,868), Keller et al. (2012) estimated that the odds of developing schizophrenia increased by approximately 17% for every additional percent of the genome that is autozygous (β = 16.1, CI(β) = [6.93, 25.7], Z = 3.44, p = 0.0006). Here we describe replication results from 22 independent schizophrenia case-control datasets from the Psychiatric Genomics Consortium (n = 39,830). Using the same ROH calling thresholds and procedures as Keller et al. (2012), we were unable to replicate the significant association between ROH burden and schizophrenia in the independent PGC phase II data, although the effect was in the predicted direction, and the combined (original + replication) dataset yielded an attenuated but significant relationship between Froh and schizophrenia (β = 4.86,CI(β) = [0.90,8.83],Z = 2.40,p = 0.02). Since Keller et al. (2012), several studies reported inconsistent association of ROH burden with complex traits, particularly in case-control data. These conflicting results might suggest that the effects of autozygosity are confounded by various factors, such as socioeconomic status, education, urbanicity, and religiosity, which may be associated with both real inbreeding and the outcome measures of interest

Age at first birth in women is genetically associated with increased risk of schizophrenia

Prof. Paunio on PGC:n jäsenPrevious studies have shown an increased risk for mental health problems in children born to both younger and older parents compared to children of average-aged parents. We previously used a novel design to reveal a latent mechanism of genetic association between schizophrenia and age at first birth in women (AFB). Here, we use independent data from the UK Biobank (N = 38,892) to replicate the finding of an association between predicted genetic risk of schizophrenia and AFB in women, and to estimate the genetic correlation between schizophrenia and AFB in women stratified into younger and older groups. We find evidence for an association between predicted genetic risk of schizophrenia and AFB in women (P-value = 1.12E-05), and we show genetic heterogeneity between younger and older AFB groups (P-value = 3.45E-03). The genetic correlation between schizophrenia and AFB in the younger AFB group is -0.16 (SE = 0.04) while that between schizophrenia and AFB in the older AFB group is 0.14 (SE = 0.08). Our results suggest that early, and perhaps also late, age at first birth in women is associated with increased genetic risk for schizophrenia in the UK Biobank sample. These findings contribute new insights into factors contributing to the complex bio-social risk architecture underpinning the association between parental age and offspring mental health.Peer reviewe