LongDocFACTScore: Evaluating the Factuality of Long Document Abstractive Summarisation

Maintaining factual consistency is a critical issue in abstractive text summarisation, however, it cannot be assessed by traditional automatic metrics used for evaluating text summarisation, such as ROUGE scoring. Recent efforts have been devoted to developing improved metrics for measuring factual consistency using pre-trained language models, but these metrics have restrictive token limits, and are therefore not suitable for evaluating long document text summarisation. Moreover, there is limited research evaluating whether existing automatic evaluation metrics are fit for purpose when applied to long document data sets. In this work, we evaluate the efficacy of automatic metrics at assessing factual consistency in long document text summarisation and propose a new evaluation framework LongDocFACTScore. This framework allows metrics to be extended to any length document. This framework outperforms existing state-of-the-art metrics in its ability to correlate with human measures of factuality when used to evaluate long document summarisation data sets. Furthermore, we show LongDocFACTScore has performance comparable to state-of-the-art metrics when evaluated against human measures of factual consistency on short document data sets. We make our code and annotated data publicly available: https://github.com/jbshp/LongDocFACTScore.Comment: 12 pages, 5 figure

Identity and Counterparthood in a Many Worlds Universe

The Many Worlds Interpretation of quantum mechanics - arguably our most powerfully predictive scientific theory to date - describes a branching Universe composed of an infinite number of quasi-classical macroscopic physical worlds. Though elegant in its straightforward rendering of the mechanics, the Many Worlds Interpretation presents a challenge for understanding identity over time. If we wish to preserve the notion of strict numerical identity, we are faced with the choice between: denying the transitivity of identity; very short-lived lives with near constant death; or accepting that the world is filled with many more individuals than we previously dreamed. In adopting a perdurantist account of identity over time, I argue for this last option. But questions remain about the relationship that branching individuals have to those from whom they’ve split. In this dissertation, I develop a novel account that I call Many Worlds Counterparts. This theory takes its inspiration from Lewis’s Counterpart Theory in offering a modal analysis of de re possibility, but avoids the major challenges that Lewis’s theory faces

A light-front coupled-cluster method for the nonperturbative solution of quantum field theories

We propose a new method for the nonperturbative solution of quantum field theories and illustrate its use in the context of a light-front analog to the Greenberg--Schweber model. The method is based on light-front quantization and uses the exponential-operator technique of the many-body coupled-cluster method. The formulation produces an effective Hamiltonian eigenvalue problem in the valence Fock sector of the system of interest, combined with nonlinear integral equations to be solved for the functions that define the effective Hamiltonian. The method avoids the Fock-space truncations usually used in nonperturbative light-front Hamiltonian methods and, therefore, does not suffer from the spectator dependence, Fock-sector dependence, and uncanceled divergences caused by such truncations.Comment: 11 pages, 4 figures, RevTeX 4.1; expanded description of method and replaced QED with simpler model for illustratio

The Integration of Optical Stimulation in a Mechanically Dynamic Cell Culture Substrate

A cell culture well with integrated mechanical and optical stimulation is presented. This is achieved by combining dielectric elastomer soft actuators, also known as artificial muscles, and a varifocal micro-electromechanical mirror that couples light from an optical fiber and focuses it onto the transparent cell substrate. The device enables unprecedented control of in vitro cell cultures by allowing the experimenter to tune and synchronize mechanical and optical stimuli, thereby enabling new experimental assays in optogenetics, fluorescent microscopy, or laser stimulation that include dynamic mechanical strain as a controlled input parameter

Science CONOPS for Application of SPORT Mission Data to Study Large (~1000km) Ionospheric Plasma Depletions

The Scintillation Prediction Observations Research Task (SPORT) mission is a single 6U CubeSat space weather satellite planned for an October 2022 launch into an ISS-like orbit. The primary purpose of the SPORT mission is to determine the longitudinal effects on equatorial plasma bubble (EPB) growth resulting from the offset dipole magnetic field of the Earth. By combining field and plasma measurements from SPORT with other low-altitude (i.e., alt \u3c 1000 km) spacecraft, it is possible to investigate large-scale (\u3e 1000 km) EPB structures. The types of investigation made possible by measurements from SPORT and other contemporaneous missions include 1) dynamics of depleted magnetic flux tubes; 2) dynamics of field-aligned EPB expansion versus propagation speed; 3) EPB vertical extent; and 4) EPB temporal evolution. To support these investigation types, the respective modes of conjunctions are: 1) simultaneous intersection of a magnetic flux tube; 2) intersection of magnetic flux tube separated in time; 3) Simultaneous Latitude/Longitude position conjunction; and 4) Non-simultaneous latitude/longitude position conjunction. This paper will summarize the SPORT satellite and data used for Science CONOPS to accomplish these objectives

A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.

We conducted a multi-stage, genome-wide association study of bladder cancer with a primary scan of 591,637 SNPs in 3,532 affected individuals (cases) and 5,120 controls of European descent from five studies followed by a replication strategy, which included 8,382 cases and 48,275 controls from 16 studies. In a combined analysis, we identified three new regions associated with bladder cancer on chromosomes 22q13.1, 19q12 and 2q37.1: rs1014971, (P = 8 × 10⁻¹²) maps to a non-genic region of chromosome 22q13.1, rs8102137 (P = 2 × 10⁻¹¹) on 19q12 maps to CCNE1 and rs11892031 (P = 1 × 10⁻⁷) maps to the UGT1A cluster on 2q37.1. We confirmed four previously identified genome-wide associations on chromosomes 3q28, 4p16.3, 8q24.21 and 8q24.3, validated previous candidate associations for the GSTM1 deletion (P = 4 × 10⁻¹¹) and a tag SNP for NAT2 acetylation status (P = 4 × 10⁻¹¹), and found interactions with smoking in both regions. Our findings on common variants associated with bladder cancer risk should provide new insights into the mechanisms of carcinogenesis

A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.

We conducted a multi-stage, genome-wide association study of bladder cancer with a primary scan of 591,637 SNPs in 3,532 affected individuals (cases) and 5,120 controls of European descent from five studies followed by a replication strategy, which included 8,382 cases and 48,275 controls from 16 studies. In a combined analysis, we identified three new regions associated with bladder cancer on chromosomes 22q13.1, 19q12 and 2q37.1: rs1014971, (P = 8 × 10⁻¹²) maps to a non-genic region of chromosome 22q13.1, rs8102137 (P = 2 × 10⁻¹¹) on 19q12 maps to CCNE1 and rs11892031 (P = 1 × 10⁻⁷) maps to the UGT1A cluster on 2q37.1. We confirmed four previously identified genome-wide associations on chromosomes 3q28, 4p16.3, 8q24.21 and 8q24.3, validated previous candidate associations for the GSTM1 deletion (P = 4 × 10⁻¹¹) and a tag SNP for NAT2 acetylation status (P = 4 × 10⁻¹¹), and found interactions with smoking in both regions. Our findings on common variants associated with bladder cancer risk should provide new insights into the mechanisms of carcinogenesis

Comparison of Proliferation and Genomic Instability Responses to WRN Silencing in Hematopoietic HL60 and TK6 Cells

BACKGROUND: Werner syndrome (WS) results from defects in the RecQ helicase (WRN) and is characterized by premature aging and accelerated tumorigenesis. Contradictorily, WRN deficient human fibroblasts derived from WS patients show a characteristically slower cell proliferation rate, as do primary fibroblasts and human cancer cell lines with WRN depletion. Previous studies reported that WRN silencing in combination with deficiency in other genes led to significantly accelerated cellular proliferation and tumorigenesis. The aim of the present study was to examine the effects of silencing WRN in p53 deficient HL60 and p53 wild-type TK6 hematopoietic cells, in order to further the understanding of WRN-associated tumorigenesis. METHODOLOGY/PRINCIPAL FINDINGS: We found that silencing WRN accelerated the proliferation of HL60 cells and decreased the cell growth rate of TK6 cells. Loss of WRN increased DNA damage in both cell types as measured by COMET assay, but elicited different responses in each cell line. In HL60 cells, but not in TK6 cells, the loss of WRN led to significant increases in levels of phosphorylated RB and numbers of cells progressing from G1 phase to S phase as shown by cell cycle analysis. Moreover, WRN depletion in HL60 cells led to the hyper-activation of homologous recombination repair via up-regulation of RAD51 and BLM protein levels. This resulted in DNA damage disrepair, apparent by the increased frequencies of both spontaneous and chemically induced structural chromosomal aberrations and sister chromatid exchanges. CONCLUSIONS/SIGNIFICANCE: Together, our data suggest that the effects of WRN silencing on cell proliferation and genomic instability are modulated probably by other genetic factors, including p53, which might play a role in the carcinogenesis induced by WRN deficiency