Farmers as data sources: Cooperative framework for mapping soil properties for permanent crops in South Tyrol (Northern Italy)

Abstract Detailed knowledge of agricultural soil properties is a key element for high-quality food production. However, high-resolution soil data covering a large agricultural region are generally unavailable. This study explores a demand-driven cooperative framework for soil data sourcing that connects individual farmers to several stakeholders by means of a centralised database containing more than 16,000 records of soil information collected within the framework of an integrated production program for intensively managed permanent crops in the Adige/Etsch and Venosta/Vinschgau valleys in South Tyrol, Italy. Data for soil pH, soil organic matter (SOM), and soil texture were used to produce digital soil maps with a RMSE of 0.21, 1.25% and a cross-validation of 43%, respectively. Spatialisation was conducted using either regression-kriging or multinomial logistic regression. Collaboration among farmers, public administrators, and researchers provided a successful cooperative framework for digital soil mapping. The maps highlight the complex interplay of the postglacial evolution of these valleys due to the presence of a cluster of large alluvial fans and the anthropogenic influences of intense farming on pH, SOM, and soil texture. This study regarded a subset of the available soil properties, which can be dealt with using the geostatistical approaches presented herein. Thus, a long-term soil monitoring program and the combination of all available variables will allow digital assessment of the spatial patterns of nutrient availability, ecological risk assessments, change detection studies, and an overall long-term plan for soil security at larger spatial scales

An Historical Overview: The Discovery of How NK Cells Can Kill Enemies, Recruit Defense Troops, and More

Natural killer (NK) cells were originally defined as effector lymphocytes of innate immunity characterized by the unique ability of killing tumor and virally infected cells without any prior priming and expansion of specific clones. The \u201cmissing-self\u201d theory, proposed by Klas Karre, the seminal discovery of the first prototypic HLA class I-specific inhibitory receptors, and, later, of the Natural Cytotoxicity Receptors (NCRs) by Alessandro Moretta, provided the bases to understand the puzzling behavior of NK cells. Actually, those discoveries proved crucial also for many of the achievements that, along the years, have contributed to the modern view of these cells. Indeed, NK cells, besides killing susceptible targets, are now known to functionally interact with different immune cells, sense pathogens using TLR, adapt their responses to the local environment, and, even, mount a sort of immunological memory. In this review, we will specifically focus on the main activating NK receptors and on their crucial role in the ever-increasing number of functions assigned to NK cells and other innate lymphoid cells (ILCs)

Reutilizar purines de tambo como oportunidad para reciclar nitrógeno y reducir su impacto ambiental

Los purines de tambo (excretas mezcladas con agua de las instalaciones de ordeñe) se pueden reutilizar en la producción agrícola como reemplazo de los fertilizantes sintéticos. Sin embargo, su alta concentración nitrogenada podría estimular la volatilización de amoníaco (NH3 ) y la emisión de óxido nitroso (N2 O), con consecuencias sobre el calentamiento global. Nuestros objetivos fueron cuantificar las salidas de NH3 y N2 O en un cultivo de maíz fertilizado con purín o urea aplicados superficialmente y relacionar las emisiones de N2 O con los cambios en el contenido de amonio, nitrato y agua del suelo. Se realizó un experimento manipulativo a campo en el que se midieron ambas salidas gaseosas durante una campaña agrícola. El purín estimuló la volatilización de NH3 al día siguiente de la aplicación (2.7±0.25 vs. 1.1±0.25 y 0.6±0.25 kg N-NH3 .ha-1.dia-1 para purín, urea y control, respectivamente), y la emisión directa de N2 O durante los tres días siguientes a la aplicación (75±13 vs. 28±5 y 26±6 µg N-N2 O. m-2.h-1 para purín, urea y control, respectivamente). A partir del cuarto día, la volatilización de NH3 fue mayor con urea y las emisiones de N2 O se equipararon entre tratamientos. La volatilización acumulada durante el ciclo de maíz fue mayor con urea, y la emisión directa de N2 O acumulada fue similar para ambos fertilizantes. Las emisiones de N2 O estuvieron asociadas a la humedad del suelo, que aumentó inicialmente por el agua del purín y luego por las lluvias. Las salidas de NH3 +N2 O de los fertilizantes luego de descontar el control fueron mayores con urea que con purín (10.8±1.2 y 3.1±0.7 kg N/ha o 0.53±0.06 y 0.18±0.04 kg N/t MS), y el rendimiento de maíz fue similar entre tratamientos (19.0±0.7 t MS/ha). Estos resultados muestran que el uso de purines es una práctica promisoria para reducir el impacto ambiental de los fertilizantes sintéticos.Dairy cattle slurry (liquid mixture of manure and water from the milking operation) can be reused for agricultural production in replacement for synthetic fertilizers. However, its high nitrogen (N) concentration could stimulate the volatilization of ammonia (NH3) and nitrous oxide (N2O) emission, with consequences for global warming. Our objectives were: to quantify NH3 and N2O loss in maize fertilized with surface-applied dairy cattle slurry or urea, and to relate N2O emission with soil ammonium, nitrate and water contents. We performed a manipulative field experiment where we measured both gaseous losses during an agricultural campaign. Slurry enhanced NH3 volatilization the day after the application (2.7±0.25 vs. 1.1±0.25 and 0.6±0.25 kg N-NH3 .ha-1 .day-1 for slurry, urea and the control, respectively) and direct N2O emission during three days after the application (75±13 vs. 28±5 y 26±6 μg N-N2O .m-2 .h-1 for slurry, urea and the control, respectively). Four days after application, volatilization was higher with urea and N2O emissions were similar between treatments. The loss of NH3 accumulated throughout the maize growing season was higher for urea than for slurry, and the accumulated N2O emission was similar for both fertilizers. Nitrous oxide emissions were related to soil water content, initially introduced with slurry and then with rainfall. The loss of NH3+N2O from the fertilizers after subtracting that of the control, was higher after the application of urea than slurry (10.8±1.2 and 3.1±0.7 kg N/ha or 0.53±0.06 and 0.18±0.04 kg N/t MS), and maize yield was similar for both fertilization treatments (19.0±0.7 t MS/ha). These results show that fertilization with dairy cattle slurry is a promising practice because it has a lower environmental footprint compared to synthetic fertilizers.EEA PergaminoFil: Portela, Silvina Isabel. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino. Laboratorio de Suelos; ArgentinaFil: Araujo, Patricia Inés. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino. Laboratorio de Suelo; ArgentinaFil: Araujo, Patricia Inés. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Restovich, Silvina B. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Pergamino. Laboratorio de Suelos; ArgentinaFil: Della Chiesa, Tomas. Universidad de Buenos Aires. Instituto de Investigaciones Fisiológicas y Ecológicas Vinculadas a la Agricultura; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones Fisiológicas y Ecológicas Vinculadas a la Agricultura; ArgentinaFil: Della Chiesa, Tomas. Universidad de Buenos Aires. Facultad de Agronomía. Catedra de Climatología y Fenología Agrícolas; ArgentinaFil: Ponsa, Juliana M. Universidad Nacional del Noroeste de la Provincia de Buenos Aires. Escuela de Ciencias Agrarias, Naturales y Ambientales; ArgentinaFil: Peña Ballesteros, Andrea. Universidad Nacional del Noroeste de la Provincia de Buenos Aires. Escuela de Ciencias Agrarias, Naturales y Ambientales; Argentin

GPR56 as a novel marker identifying the CD56dull CD16+ NK cell subset both in blood stream and in inflamed peripheral tissues

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Hepatitis B Virus Lacks Immune Activating Capacity, but Actively Inhibits Plasmacytoid Dendritic Cell Function

Chronic hepatitis B virus (HBV) infection is caused by inadequate anti-viral immunity. Activation of plasmacytoid dendritic cells (pDC) leading to IFNα production is important for effective anti-viral immunity. Hepatitis B virus (HBV) infection lacks IFNα induction in animal models and patients and chronic HBV patients display impaired IFNα production by pDC. Therefore, HBV and HBV-derived proteins were examined for their effect on human pDC in vitro. In addition, the in vitro findings were compared to the function of pDC derived from chronic HBV patients ex vivo. In contrast to other viruses, HBV did not activate pDC. Moreover, HBV and HBsAg abrogated CpG-A/TLR9-induced, but not Loxoribine/TLR7-induced, mTOR-mediated S6 phosphorylation, subsequent IRF7 phosphorylation and IFNα gene transcription. HBV/HBsAg also diminished upregulation of co-stimulatory molecules, production of TNFα, IP-10 and IL-6 and pDC-induced NK cell function, whereas TLR7-induced pDC function was hardly affected. In line, HBsAg preferentially bound to TLR9-triggered pDC demonstrating that once pDC are able to bind HBV/HBsAg, the virus exerts its immune regulatory effect. HBV not only directly interfered with pDC function, but also indirectly by interfering with monocyte-pDC interaction. Also HBeAg diminished pDC function to a certain extent, but via another unknown mechanism. Interestingly, patients with HBeAg-positive chronic hepatitis B displayed impaired CpG-induced IFNα production by pDC without significant alterations in Loxoribine-induced pDC function compared to HBeAg-negative patients and healthy controls. The lack of activation and the active inhibition of pDC by HBV may both contribute to HBV persistence. The finding that the interaction between pDC and HBV may change upon activation may aid in the identification of a scavenging receptor supporting immunosuppressive effects of HBV and also in the design of novel treatment strategies for chronic HBV

Global maps of soil temperature

Research in global change ecology relies heavily on global climatic grids derived from estimates of air temperature in open areas at around 2 m above the ground. These climatic grids do not reflect conditions below vegetation canopies and near the ground surface, where critical ecosystem functions occur and most terrestrial species reside. Here, we provide global maps of soil temperature and bioclimatic variables at a 1-km² resolution for 0–5 and 5–15 cm soil depth. These maps were created by calculating the difference (i.e., offset) between in-situ soil temperature measurements, based on time series from over 1200 1-km² pixels (summarized from 8500 unique temperature sensors) across all the world’s major terrestrial biomes, and coarse-grained air temperature estimates from ERA5-Land (an atmospheric reanalysis by the European Centre for Medium-Range Weather Forecasts). We show that mean annual soil temperature differs markedly from the corresponding gridded air temperature, by up to 10°C (mean = 3.0 ± 2.1°C), with substantial variation across biomes and seasons. Over the year, soils in cold and/or dry biomes are substantially warmer (+3.6 ± 2.3°C) than gridded air temperature, whereas soils in warm and humid environments are on average slightly cooler (-0.7 ± 2.3°C). The observed substantial and biome-specific offsets emphasize that the projected impacts of climate and climate change on near-surface biodiversity and ecosystem functioning are inaccurately assessed when air rather than soil temperature is used, especially in cold environments. The global soil-related bioclimatic variables provided here are an important step forward for any application in ecology and related disciplines. Nevertheless, we highlight the need to fill remaining geographic gaps by collecting more in-situ measurements of microclimate conditions to further enhance the spatiotemporal resolution of global soil temperature products for ecological applications

Global maps of soil temperature

Research in global change ecology relies heavily on global climatic grids derived from estimates of air temperature in open areas at around 2 m above the ground. These climatic grids do not reflect conditions below vegetation canopies and near the ground surface, where critical ecosystem functions occur and most terrestrial species reside. Here, we provide global maps of soil temperature and bioclimatic variables at a 1-km2 resolution for 0–5 and 5–15 cm soil depth. These maps were created by calculating the difference (i.e. offset) between in situ soil temperature measurements, based on time series from over 1200 1-km2 pixels (summarized from 8519 unique temperature sensors) across all the world\u27s major terrestrial biomes, and coarse-grained air temperature estimates from ERA5-Land (an atmospheric reanalysis by the European Centre for Medium-Range Weather Forecasts). We show that mean annual soil temperature differs markedly from the corresponding gridded air temperature, by up to 10°C (mean = 3.0 ± 2.1°C), with substantial variation across biomes and seasons. Over the year, soils in cold and/or dry biomes are substantially warmer (+3.6 ± 2.3°C) than gridded air temperature, whereas soils in warm and humid environments are on average slightly cooler (−0.7 ± 2.3°C). The observed substantial and biome-specific offsets emphasize that the projected impacts of climate and climate change on near-surface biodiversity and ecosystem functioning are inaccurately assessed when air rather than soil temperature is used, especially in cold environments. The global soil-related bioclimatic variables provided here are an important step forward for any application in ecology and related disciplines. Nevertheless, we highlight the need to fill remaining geographic gaps by collecting more in situ measurements of microclimate conditions to further enhance the spatiotemporal resolution of global soil temperature products for ecological applications