5,226 research outputs found
Breather trapping and breather transmission in a DNA model with an interface
We study the dynamics of moving discrete breathers in an interfaced piecewise
DNA molecule.
This is a DNA chain in which all the base pairs are identical and there
exists an interface such that the base pairs dipole moments at each side are
oriented in opposite directions.
The Hamiltonian of the Peyrard--Bishop model is augmented with a term that
includes the dipole--dipole coupling between base pairs. Numerical simulations
show the existence of two dynamical regimes. If the translational kinetic
energy of a moving breather launched towards the interface is below a critical
value, it is trapped in a region around the interface collecting vibrational
energy. For an energy larger than the critical value, the breather is
transmitted and continues travelling along the double strand with lower
velocity. Reflection phenomena never occur.
The same study has been carried out when a single dipole is oriented in
opposite direction to the other ones.
When moving breathers collide with the single inverted dipole, the same
effects appear. These results emphasize the importance of this simple type of
local inhomogeneity as it creates a mechanism for the trapping of energy.
Finally, the simulations show that, under favorable conditions, several
launched moving breathers can be trapped successively at the interface region
producing an accumulation of vibrational energy. Moreover, an additional
colliding moving breather can produce a saturation of energy and a moving
breather with all the accumulated energy is transmitted to the chain.Comment: 15 pages, 11 figure
Control of a utility connected microgrid
This paper describes the control algorithm of a utility connected microgrid, based on independent control of active and reactive power (PQ control) and working in centralized
operation mode. The microgrid under investigation is composed of three configurable units: a generation unit, a storage unit and a load. These units are interfaced with the microgrid through a
Voltage Source Converter (VSC) and are controlled by the nodes of the communication system by means of IEC 61850. A set of
tests have been conducted to evaluate the microgrid behavior.Postprint (published version
Perspectives on the Trypanosoma cruzi-host cell receptor interaction
Chagas disease is caused by the parasite Trypanosoma cruzi. The critical initial event is the interaction of the trypomastigote form of the parasite with host receptors. This review highlights recent observations concerning these interactions. Some of the key receptors considered are those for thromboxane, bradykinin, and for the nerve growth factor TrKA. Other important receptors such as galectin-3, thrombospondin, and laminin are also discussed. Investigation into the molecular biology and cell biology of host receptors for T. cruzi may provide novel therapeutic targets
Solitary waves in the Nonlinear Dirac Equation
In the present work, we consider the existence, stability, and dynamics of
solitary waves in the nonlinear Dirac equation. We start by introducing the
Soler model of self-interacting spinors, and discuss its localized waveforms in
one, two, and three spatial dimensions and the equations they satisfy. We
present the associated explicit solutions in one dimension and numerically
obtain their analogues in higher dimensions. The stability is subsequently
discussed from a theoretical perspective and then complemented with numerical
computations. Finally, the dynamics of the solutions is explored and compared
to its non-relativistic analogue, which is the nonlinear Schr{\"o}dinger
equation. A few special topics are also explored, including the discrete
variant of the nonlinear Dirac equation and its solitary wave properties, as
well as the PT-symmetric variant of the model
A search for resonant production of pairs in $4.8\ \rm{fb}^{-1}p\bar{p}\sqrt{s}=1.96\ \rm{TeV}$
We search for resonant production of tt pairs in 4.8 fb^{-1} integrated
luminosity of ppbar collision data at sqrt{s}=1.96 TeV in the lepton+jets decay
channel, where one top quark decays leptonically and the other hadronically. A
matrix element reconstruction technique is used; for each event a probability
density function (pdf) of the ttbar candidate invariant mass is sampled. These
pdfs are used to construct a likelihood function, whereby the cross section for
resonant ttbar production is estimated, given a hypothetical resonance mass and
width. The data indicate no evidence of resonant production of ttbar pairs. A
benchmark model of leptophobic Z \rightarrow ttbar is excluded with m_{Z'} <
900 GeV at 95% confidence level.Comment: accepted for publication in Physical Review D Sep 21, 201
Combined search for the standard model Higgs boson decaying to a bb pair using the full CDF data set
We combine the results of searches for the standard model Higgs boson based
on the full CDF Run II data set obtained from sqrt(s) = 1.96 TeV p-pbar
collisions at the Fermilab Tevatron corresponding to an integrated luminosity
of 9.45/fb. The searches are conducted for Higgs bosons that are produced in
association with a W or Z boson, have masses in the range 90-150 GeV/c^2, and
decay into bb pairs. An excess of data is present that is inconsistent with the
background prediction at the level of 2.5 standard deviations (the most
significant local excess is 2.7 standard deviations).Comment: To be published in Phys. Rev. Lett (v2 contains minor updates based
on comments from PRL
Precision Top-Quark Mass Measurements at CDF
We present a precision measurement of the top-quark mass using the full
sample of Tevatron TeV proton-antiproton collisions collected
by the CDF II detector, corresponding to an integrated luminosity of 8.7
. Using a sample of candidate events decaying into the
lepton+jets channel, we obtain distributions of the top-quark masses and the
invariant mass of two jets from the boson decays from data. We then compare
these distributions to templates derived from signal and background samples to
extract the top-quark mass and the energy scale of the calorimeter jets with
{\it in situ} calibration. The likelihood fit of the templates from signal and
background events to the data yields the single most-precise measurement of the
top-quark mass, \mtop = 172.85 \pm\pmComment: submitted to Phys. Rev. Let
Measurement of branching ratio and Bs0 lifetime in the decay Bs0 -> J/psi f0(980) at CDF
We present a study of Bs0 decays to the CP-odd final state J/psi f0(980) with
J/psi -> mu+ mu- and f0(980) -> pi+ pi-. Using ppbar collision data with an
integrated luminosity of 3.8/fb collected by the CDF II detector at the
Tevatron we measure a Bs0 lifetime of tau(Bs0 -> J/psi f0(980)) = 1.70
-0.11+0.12(stat) +-0.03(syst) ps. This is the first measurement of the Bs0
lifetime in a decay to a CP eigenstate and corresponds in the standard model to
the lifetime of the heavy Bs0 eigenstate. We also measure the product of
branching fractions of Bs0 -> J/psi f0(980) and f0(980) -> pi+ pi- relative to
the product of branching fractions of Bs0 -> J/psi phi and phi -> K+ K- to be
R_f0/phi = 0.257 +_0.020(stat) +-0.014(syst), which is the most precise
determination of this quantity to date.Comment: accepted by Phys. Rev.
The stb Operon Balances the Requirements for Vegetative Stability and Conjugative Transfer of Plasmid R388
The conjugative plasmid R388 and a number of other plasmids carry an operon, stbABC, adjacent to the origin of conjugative transfer. We investigated the role of the stbA, stbB, and stbC genes. Deletion of stbA affected both conjugation and stability. It led to a 50-fold increase in R388 transfer frequency, as well as to high plasmid loss. In contrast, deletion of stbB abolished conjugation but provoked no change in plasmid stability. Deletion of stbC showed no effect, neither in conjugation nor in stability. Deletion of the entire stb operon had no effect on conjugation, which remained as in the wild-type plasmid, but led to a plasmid loss phenotype similar to that of the R388ΔstbA mutant. We concluded that StbA is required for plasmid stability and that StbA and StbB control conjugation. We next observed the intracellular positioning of R388 DNA molecules and showed that they localize as discrete foci evenly distributed in live Escherichia coli cells. Plasmid instability of the R388ΔΔstbA mutant correlated with aberrant localization of the plasmid DNA molecules as clusters, either at one cell pole, at both poles, or at the cell center. In contrast, plasmid molecules in the R388ΔΔstbB mutant were mostly excluded from the cell poles. Thus, results indicate that defects in both plasmid maintenance and transfer are a consequence of variations in the intracellular positioning of plasmid DNA. We propose that StbA and StbB constitute an atypical plasmid stabilization system that reconciles two modes of plasmid R388 physiology: a maintenance mode (replication and segregation) and a propagation mode (conjugation). The consequences of this novel concept in plasmid physiology will be discussed
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