Geochronological reconsideration of the eastern European key loess section at Stayky in Ukraine

Event-stratigraphical correlations between regional terrestrial sedimentary archives and marine or ice-core records that provide climate history are highly desirable for a deeper understanding of the effects of global climate change. However, such correlations are not simple, as the terrestrial records tend to be floating and fragmentary, and usually show varying sedimentation rates. Therefore, a reliable chronometric framework is a prerequisite for any event stratigraphy involving terrestrial archives. We propose that the age model underlying the event-stratigraphical approach for the eastern European key loess section at Stayky in Ukraine needs revision. Here we explore why it is unlikely that the Middle Pleniglacial Vytachiv Soil developed during Greenland interstadial (GIS) 8, and why the embryonic soils in the upper part of the Upper Pleniglacial part of the loess section most likely post-date the Heinrich 2 event. As a consequence, the revised age-model challenges the earlier suggested correlation of the suite of incipient soils above the Vytachiv Soil with Greenland Interstadials, which was supposed to start with GIS7 but for which matching from after GIS5 seems more likely. The revised chronology suggests that the transition from Middle to Upper Pleniglacial environmental conditions at the eastern European key section occurred during the final phase of marine isotope stage (MIS) 3. Thus, the picture appears to be in accordance with that of the western European key section at Nussloch. This points to a common driver of palaeo-environmental change in both regions, such as early late glacial maximum (LGM) advances of the Arctic ice shield or changes of the North Atlantic circulation and sea-ice distribution associated with changes in the palaeowind field relevant to aeolian loess deposition and soil formation. To test and substantiate the alternative age model, more chronologies for well-stratified loess sections throughout the European loess belt are required

Revision of the Mediterranean and southern African Triglochin bulbosa complex (Juncaginaceae)

The Triglochin bulbosa complex (Juncaginaceae) from the Mediterranean region and Africa is revised. One new species, Triglochin buchenaui Kocke, Mering & Kadereit, and two new subspecies, Triglochin bulbosa subsp. calcicola Mering, Kocke & Kadereit and Triglochin bulbosa subsp. quarcicola Mering, Kocke & Kadereit, are described from South Africa. The only two Mediterranean taxa in the complex (Triglochin barrelieri, T. laxiflora) are elevated to species rank. Altogether seven species and four subspecies are recognised: Triglochin barrelieri, T. buchenaui, T. bulbosa subsp. bulbosa, T. bulbosa subsp. calcicola, T. bulbosa subsp. quarcicola, T. bulbosa subsp. tenuifolia, T. compacta, T. elongata, T. laxiflora and T. milnei. An identification key, detailed descriptions and accounts of the ecology and distribution of the taxa are provided. An IUCN conservation status is proposed for each taxon

Böden auf Flussterrassen der Rhône (Frankreich) als Archive eines zeitlich veränderlichen Gradienten vom gemäßigten zum mediterranen Klima

Das Rhônetal verläuft zwischen Lyon und dem Rhônedelta in der Camargue weitgehend in nordsüdlicher Richtung und folgt damit einem klimatischen Gradienten vom feucht-gemäßigten ins mediterrane Klima. Dieser Gradient spiegelt sich auch in den Böden wider. Dementsprechend sollten Paläoböden und polygenetische Oberflächenböden entlang der Rhône dokumentieren, wie dieser klimatische Gradient zu anderen Zeiten ausgeprägt war. Aufgrund der unterschiedlich alten Flussterrassen und Lössvorkommen in mehreren Regionen sind überall entlang der Rhône entsprechende Paläobodenarchive vorhanden. Ziel dieser Arbeit ist es, diese Archive zur Rekonstruktion des Verlaufs des Klimagradienten entlang der Rhône zu früheren Zeiten zu nutzen. Besonders interessant ist hierbei die Frage, wie weit der Mediterranraum während des Eems nach Norden ausgedehnt war, da für das Eem im Vergleich zu heute höhere Temperaturen angenommen werden. Ähnliche Grenzen des Mediterranraums könnten sich als Resultat des derzeitigen Klimawandels in den kommenden Jahrzehnten wieder einstellen. Ausgehend von der Position des derzeitigen Übergangs vom Mediterranraum in die gemäßigte Zone im Rhônetal (etwa bei Valence), wird für das Eem der Übergang weiter nördlich angenommen. Bereits in den 70er Jahren wurden Böden der pleistozänen Terrassen der Rhône untersucht. Dabei lag der Fokus jedoch nicht darauf, den Klimagradienten entlang der Rhône während vergangener Warm- und Kaltzeiten herauszuarbeiten. Die hier vorgestellte Arbeit zielt darauf ab, anhand von ausgewählten Bodenprofilen in risszeitlichen Schottern entlang des Klimagradienten die eem-zeitliche Übergangszone vom Mediterranraum ins gemäßigte Klima zu identifizieren. Geeignete Profilstandorte werden mit Hilfe eines hochauflösenden DGM ausgewählt. Die Bodenprofile werden u. a. hinsichtlich Bodenfarbe und Verwitterungsindizes analysiert. Auf dem Poster werden die in den Jahren 2016 und 2017 beprobten Profile entlang der Rhône vorgestellt

Inter- and intra-island speciation and their morphological and ecological correlates in Aeonium (Crassulaceae), a species-rich Macaronesian radiation

Background and Aims The most species-rich and ecologically diverse plant radiation on the Canary Islands is the Aeonium alliance (Crassulaceae). In island radiations like this, speciation can take place either within islands or following dispersal between islands. Aiming at quantifying intra- and inter-island speciation events in the evolution of Aeonium, and exploring their consequences, we hypothesized that (1) intra-island diversification resulted in stronger ecological divergence of sister lineages, and that (2) taxa on islands with a longer history of habitation by Aeonium show stronger ecological differentiation and produce fewer natural hybrids. Methods We studied the biogeographical and ecological setting of diversification processes in Aeonium with a fully sampled and dated phylogeny inferred using a ddRADseq approach. Ancestral areas and biogeographical events were reconstructed in BioGeoBEARS. Eleven morphological characters and three habitat characteristics were taken into account to quantify the morphological and ecological divergence between sister lineages. A co-occurrence matrix of all Aeonium taxa is presented to assess the spatial separation of taxa on each island. Key Results We found intra- and inter-island diversification events in almost equal numbers. In lineages that diversified within single islands, morphological and ecological divergence was more pronounced than in lineages derived from inter-island diversification, but only the difference in morphological divergence was significant. Those islands with the longest history of habitation by Aeonium had the lowest percentages of co-occurring and hybridizing taxon pairs compared with islands where Aeonium arrived later. Conclusions Our findings illustrate the importance of both inter- and intra-island speciation, the latter of which is potentially sympatric speciation. Speciation on the same island entailed significantly higher levels of morphological divergence compared with inter-island speciation, but ecological divergence was not significantly different. Longer periods of shared island habitation resulted in the evolution of a higher degree of spatial separation and stronger reproductive barriers.info:eu-repo/semantics/publishedVersio

Phylogeny, biogeography and systematics of Dysphanieae (Amaranthaceae)

After a rather turbulent taxonomic history, Dysphanieae (Chenopodioideae, Amaranthaceae) were established to contain five genera, four of which are monospecific (Cycloloma, Neomonolepis, Suckleya, Teloxys) and geographically restricted, and the fifth genus, Dysphania, having a nearly worldwide distribution and comprising ca. 50 species. This study investigates the phylogeny, biogeography and taxonomy of Dysphanieae. We studied specimens from 32 herbaria to infer morphological differences and distribution areas of the species and sampled 121 accessions representing 39 accepted species of the tribe for molecular phylogenetic analyses. The molecular phylogeny tested generic relationships of the tribe and infrageneric relationships of Dysphania on the basis of two plastid DNA markers (atpB-rbcL spacer, rpl16 intron) and two nuclear ribosomal markers (ETS, ITS) and was also used for an ancestral area reconstruction with BioGeoBEARS. Three of the monospecific genera (Neomonolepis, Suckleya, Teloxys) form a basal grade and appear to be relictual lineages of the tribe, while Cycloloma is nested within Dysphania. The ancestral area reconstruction favors a widespread ancestry for Dysphanieae, and the relictual lineages in Asia (Teloxys) and North America (Neomonolepis, Suckleya) might be explained by a wide distribution across Beringia during the Late Oligocene/Early Miocene. Dysphania likely originated in North America; however, the simultaneous diversification into three major clades, an Asian/African, an American and an Australian/African clade, indicates a widespread ancestor at the crown node of Dysphania. Our taxonomic revision results in four accepted genera in Dysphanieae, Dysphania, Neomonolepis, Suckleya and Teloxys. The sectional subdivision for Dysphania is revised. We subdivide the genus into five sections, D. sect. Adenois (13 spp.), D. sect. Botryoides (10 spp.), D. sect. Dysphania (17 spp.), D. sect. Incisa (2 spp.) and D. sect. Margaritaria (4 spp.); three strongly deviating species remain unplaced and need further attention.Peer reviewe

How challenging RADseq data turned out to favor coalescent-based species tree inference. A case study in Aichryson (Crassulaceae)

Analysing multiple genomic regions while incorporating detection and qualification of discordance among regions has become standard for understanding phylogenetic relationships. In plants, which usually have comparatively large genomes, this is feasible by the combination of reduced-representation library (RRL) methods and high-throughput sequencing enabling the cost effective acquisition of genomic data for thousands of loci from hundreds of samples. One popular RRL method is RADseq. A major disadvantage of established RADseq approaches is the rather short fragment and sequencing range, leading to loci of little individual phylogenetic information. This issue hampers the application of coalescent-based species tree inference. The modified RADseq protocol presented here targets ca. 5,000 loci of 300-600nt length, sequenced with the latest short-read-sequencing (SRS) technology, has the potential to overcome this drawback. To illustrate the advantages of this approach we use the study group Aichryson Webb & Berthelott (Crassulaceae), a plant genus that diversified on the Canary Islands. The data analysis approach used here aims at a careful quality control of the long loci dataset. It involves an informed selection of thresholds for accurate clustering, a thorough exploration of locus properties, such as locus length, coverage and variability, to identify potential biased data and a comparative phylogenetic inference of filtered datasets, accompanied by an evaluation of resulting BS support, gene and site concordance factor values, to improve overall resolution of the resulting phylogenetic trees. The final dataset contains variable loci with an average length of 373nt and facilitates species tree estimation using a coalescent-based summary approach. Additional improvements brought by the approach are critically discussed

Rubisco evolution in C₄ eudicots: an analysis of Amaranthaceae sensu lato.

BACKGROUND: Rubisco (ribulose-1,5-bisphosphate carboxylase/oxygenase) catalyses the key reaction in the photosynthetic assimilation of CO₂. In C₄ plants CO₂ is supplied to Rubisco by an auxiliary CO₂-concentrating pathway that helps to maximize the carboxylase activity of the enzyme while suppressing its oxygenase activity. As a consequence, C₄ Rubisco exhibits a higher maximum velocity but lower substrate specificity compared with the C₃ enzyme. Specific amino-acids in Rubisco are associated with C₄ photosynthesis in monocots, but it is not known whether selection has acted on Rubisco in a similar way in eudicots. METHODOLOGY/PRINCIPAL FINDINGS: We investigated Rubisco evolution in Amaranthaceae sensu lato (including Chenopodiaceae), the third-largest family of C₄ plants, using phylogeny-based maximum likelihood and Bayesian methods to detect Darwinian selection on the chloroplast rbcL gene in a sample of 179 species. Two Rubisco residues, 281 and 309, were found to be under positive selection in C₄ Amaranthaceae with multiple parallel replacements of alanine by serine at position 281 and methionine by isoleucine at position 309. Remarkably, both amino-acids have been detected in other C₄ plant groups, such as C₄ monocots, illustrating a striking parallelism in molecular evolution. CONCLUSIONS/SIGNIFICANCE: Our findings illustrate how simple genetic changes can contribute to the evolution of photosynthesis and strengthen the hypothesis that parallel amino-acid replacements are associated with adaptive changes in Rubisco

Mesenchymal Stem Cells Prevent the Rejection of Fully Allogenic Islet Grafts by the Immunosuppressive Activity of Matrix Metalloproteinase-2 and -9

OBJECTIVE Mesenchymal stem cells (MSCs) are known to be capable of suppressing immune responses, but the molecular mechanisms involved and the therapeutic potential of MSCs remain to be clarified. RESEARCH DESIGN AND METHODS We investigated the molecular mechanisms underlying the immunosuppressive effects of MSCs in vitro and in vivo. RESULTS Our results demonstrate that matrix metalloproteinases (MMPs) secreted by MSCs, in particular MMP-2 and MMP-9, play an important role in the suppressive activity of MSCs by reducing surface expression of CD25 on responding T-cells. Blocking the activity of MMP-2 and MMP-9 in vitro completely abolished the suppression of T-cell proliferation by MSCs and restored T-cell expression of CD25 as well as responsiveness to interleukin-2. In vivo, administration of MSCs significantly reduced delayed-type hypersensitivity responses to allogeneic antigen and profoundly prolonged the survival of fully allogeneic islet grafts in transplant recipients. Significantly, these MSC-mediated protective effects were completely reversed by in vivo inhibition of MMP-2 and MMP-9. CONCLUSIONS We demonstrate that MSCs can prevent islet allograft rejection leading to stable, long-term normoglycemia. In addition, we provide a novel insight into the mechanism underlying the suppressive effects of MSCs on T-cell responses to alloantigen.</p

Macro-Climatic Distribution Limits Show Both Niche Expansion and Niche Specialization among C4 Panicoids

Grasses are ancestrally tropical understory species whose current dominance in warm open habitats is linked to the evolution of C4 photosynthesis. C4 grasses maintain high rates of photosynthesis in warm and water stressed environments, and the syndrome is considered to induce niche shifts into these habitats while adaptation to cold ones may be compromised. Global biogeographic analyses of C4 grasses have, however, concentrated on diversity patterns, while paying little attention to distributional limits. Using phylogenetic contrast analyses, we compared macro-climatic distribution limits among ~1300 grasses from the subfamily Panicoideae, which includes 4/5 of the known photosynthetic transitions in grasses. We explored whether evolution of C4 photosynthesis correlates with niche expansions, niche changes, or stasis at subfamily level and within the two tribes Paniceae and Paspaleae. We compared the climatic extremes of growing season temperatures, aridity, and mean temperatures of the coldest months. We found support for all the known biogeographic distribution patterns of C4 species, these patterns were, however, formed both by niche expansion and niche changes. The only ubiquitous response to a change in the photosynthetic pathway within Panicoideae was a niche expansion of the C4 species into regions with higher growing season temperatures, but without a withdrawal from the inherited climate niche. Other patterns varied among the tribes, as macro-climatic niche evolution in the American tribe Paspaleae differed from the pattern supported in the globally distributed tribe Paniceae and at family level.Fil: Aagesen, Lone. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Botánica Darwinion. Academia Nacional de Ciencias Exactas, Físicas y Naturales. Instituto de Botánica Darwinion; ArgentinaFil: Biganzoli, Fernando. Universidad de Buenos Aires. Facultad de Agronomía. Departamento de Métodos Cuantitativos y Sistemas de Información; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Bena, María Julia. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Botánica Darwinion. Academia Nacional de Ciencias Exactas, Físicas y Naturales. Instituto de Botánica Darwinion; ArgentinaFil: Godoy Bürki, Ana Carolina. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Botánica Darwinion. Academia Nacional de Ciencias Exactas, Físicas y Naturales. Instituto de Botánica Darwinion; ArgentinaFil: Reinheimer, Renata. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Agrobiotecnología del Litoral. Universidad Nacional del Litoral. Instituto de Agrobiotecnología del Litoral; ArgentinaFil: Zuloaga, Fernando Omar. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Botánica Darwinion. Academia Nacional de Ciencias Exactas, Físicas y Naturales. Instituto de Botánica Darwinion; Argentin

State-of-the-art of 3D cultures (organs-on-a-chip) in safety testing and pathophysiology.

Integrated approaches using different in vitro methods in combination with bioinformatics can (i) increase the success rate and speed of drug development; (ii) improve the accuracy of toxicological risk assessment; and (iii) increase our understanding of disease. Three-dimensional (3D) cell culture models are important building blocks of this strategy which has emerged during the last years. The majority of these models are organotypic, i.e., they aim to reproduce major functions of an organ or organ system. This implies in many cases that more than one cell type forms the 3D structure, and often matrix elements play an important role. This review summarizes the state of the art concerning commonalities of the different models. For instance, the theory of mass transport/metabolite exchange in 3D systems and the special analytical requirements for test endpoints in organotypic cultures are discussed in detail. In the next part, 3D model systems for selected organs--liver, lung, skin, brain--are presented and characterized in dedicated chapters. Also, 3D approaches to the modeling of tumors are presented and discussed. All chapters give a historical background, illustrate the large variety of approaches, and highlight up- and downsides as well as specific requirements. Moreover, they refer to the application in disease modeling, drug discovery and safety assessment. Finally, consensus recommendations indicate a roadmap for the successful implementation of 3D models in routine screening. It is expected that the use of such models will accelerate progress by reducing error rates and wrong predictions from compound testing