Mapping Prosopis glandulosa (mesquite) invasion in the arid environment of South African using remote sensing techniques

A dissertation submitted to the School of Geography, Archaeology and Environmental Studies, Faculty of Science, University of the Witwatersrand, Johannesburg, in fulfilment of requirements for the degree of Master of Science in Environmental Sciences. Johannesburg, March 2016.Mapping Prosopis glandulosa (mesquite) invasion in the arid environment of South Africa using remote sensing techniques Mureriwa, Nyasha Abstract Decades after the first introduction of the Prosopis spp. (mesquite) to South Africa in the late 1800s for its benefits, the invasive nature of the species became apparent as its spread in regions of South Africa resulting in devastating effects to biodiversity, ecosystems and the socio-economic wellbeing of affected regions. Various control and management practices that include biological, physical, chemical and integrated methods have been tested with minimal success as compared to the rapid spread of the species. From previous studies, it has been noted that one of the reasons for the low success rates in mesquite control and management is a lack of sufficient information on the species invasion dynamic in relation to its very similar co-existing species. In order to bridge this gap in knowledge, vegetation species mapping techniques that use remote sensing methods need to be tested for the monitoring, detection and mapping of the species spread. Unlike traditional field survey methods, remote sensing techniques are better at monitoring vegetation as they can cover very large areas and are time-effective and cost-effective. Thus, the aim of this research was to examine the possibility of mapping and spectrally discriminating Prosopis glandulosa from its native co-existing species in semi-arid parts of South Africa using remote sensing methods. The specific objectives of the study were to investigate the spectral separability between Prosopis glandulosa and its co-existing species using field spectral data as well as to upscale the results to different satellites resolutions. Two machine learning algorithms (Random Forest (RF) and Support Vector Machines (SVM)) were also tested in the mapping processes. The first chapter of the study evaluated the spectral discrimination of Prosopis glandulosa from three other species (Acacia karoo, Acacia mellifera and Ziziphus mucronata) in the study area using in-situ spectroscopy in conjunction with the newly developed guided regularized random forest (GRRF) algorithm in identifying key wavelengths for multiclass classification. The GRRF algorithm was used as a method of reducing the problem of high dimensionality associated with hyperspectral data. Results showed that there was an increase in the accuracy of discrimination between the four species when the full set of 1825 wavelengths was used in classification (79.19%) as compared to the classification used by the 11 key wavelengths identified by GRRF (88.59%). Results obtained from the second chapter showed that it is possible to spatially discriminate mesquite from its co-existing acacia species and other general land-cover types at a 2 m resolution with overall accuracies of 86.59% for RF classification and 85.98% for SVM classification. The last part of the study tested the use of the more cost effective SPOT-6 imagery and the RF and SVM algorithms in mapping Prosopis glandulosa invasion and its co-existing indigenous species. The 6 m resolution analysis obtained accuracies of 78.46% for RF and 77.62% for SVM. Overall it was concluded that spatial and spectral discrimination of Prosopis glandulosa from its native co-existing species in semi-arid South Africa was possible with high accuracies through the use of (i) two high resolution, new generation sensors namely, WorldView-2 and SPOT-6; (ii) two robust classification algorithms specifically, RF and SVM and (iii) the newly developed GRRF algorithm for variable selection and reducing the high dimensionality problem associated with hyperspectral data. Some recommendations for future studies include the replication of this study on a larger scale in different invaded areas across the country as well as testing the robustness of the RF and SVM classifiers by making use of other machine learning algorithms and classification methods in species discrimination. Keywords: Prosopis glandulosa, field spectroscopy, cost effectiveness, Guided Regularised Random Forest, Support Vector Machines, Worldview-2, Spot-

Characterizing degradation gradients through land cover change analysis in rural Eastern Cape, South Africa

CITATION: Munch, Z., et al. 2017. Characterizing degradation gradients through land cover change analysis in rural Eastern Cape, South Africa. Geosciences, 7(1):7, doi:10.3390/geosciences7010007.The original publication is available at http://www.mdpi.comLand cover change analysis was performed for three catchments in the rural Eastern Cape, South Africa, for two time steps (2000 and 2014), to characterize landscape conversion trajectories for sustained landscape health. Land cover maps were derived: (1) from existing data (2000); and (2) through object-based image analysis (2014) of Landsat 8 imagery. Land cover change analysis was facilitated using land cover labels developed to identify landscape change trajectories. Land cover labels assigned to each intersection of the land cover maps at the two time steps provide a thematic representation of the spatial distribution of change. While land use patterns are characterized by high persistence (77%), the expansion of urban areas and agriculture has occurred predominantly at the expense of grassland. The persistence and intensification of natural or invaded wooded areas were identified as a degradation gradient within the landscape, which amounted to almost 10% of the study area. The challenge remains to determine significant signals in the landscape that are not artefacts of error in the underlying input data or scale of analysis. Systematic change analysis and accurate uncertainty reporting can potentially address these issues to produce authentic output for further modelling.http://www.mdpi.com/2076-3263/7/1/7Publisher's versio

Applications of Remote Sensing to Alien Invasive Plant Studies

Biological invasions can affect ecosystems across a wide spectrum of bioclimatic conditions. Therefore, it is often important to systematically monitor the spread of species over a broad region. Remote sensing has been an important tool for large-scale ecological studies in the past three decades, but it was not commonly used to study alien invasive plants until the mid 1990s. We synthesize previous research efforts on remote sensing of invasive plants from spatial, temporal and spectral perspectives. We also highlight a recently developed state-of-the-art image fusion technique that integrates passive and active energies concurrently collected by an imaging spectrometer and a scanning-waveform light detection and ranging (LiDAR) system, respectively. This approach provides a means to detect the structure and functional properties of invasive plants of different canopy levels. Finally, we summarize regional studies of biological invasions using remote sensing, discuss the limitations of remote sensing approaches, and highlight current research needs and future directions

Remote Sensing of Riparian Areas and Invasive Species

Riparian areas are critical landscape features situated between terrestrial and aquatic environments, which provide a host of ecosystem functions and services. Although important to the environmental health of an ecosystem, riparian areas have been degraded by anthropogenic disturbances. These routine disturbances have decreased the resiliency of riparian areas and increased their vulnerability to invasive plant species. Invasive plant species are non-native species which cause harm to the ecosystem and thrive in riparian areas due to the access to optimal growing conditions.Remote sensing provides an opportunity to manage riparian habitats at a regional and local level with imagery collected by satellites and unmanned aerial systems (UAS). The aim of this study was two-fold: firstly, to investigate riparian delineation methods using moderate resolution satellite imagery; and secondly, the feasibility of UAS to detect the invasive plant Fallopia japonica (Japanese Knotweed) within the defined areas. I gathered imagery from the Landsat 8 OLI and Sentinel-2 satellites to complete the regional level study and collected UAS imagery at a study site in northern New Hampshire for the local level portion. I obtained a modest overall accuracy from the regional riparian classification of 59% using the Sentinel-2 imagery. The local invasive species classification yielded thematic maps with overall accuracies of up to 70%, which is comparable to other studies with the same focus species. Remote sensing is a valuable tool in the management of riparian habitat and invasive plant species

The integration of freely available medium resolution optical sensors with Synthetic Aperture Radar (SAR) imagery capabilities for American bramble (Rubus cuneifolius) invasion detection and mapping.

Doctoral Degree. University of KwaZulu- Natal, Pietermaritzburg.The emergence of American bramble (Rubus cuneifolius) across South Africa has caused severe ecological and economic damage. To date, most of the efforts to mitigate its effects have been largely unsuccessful due to its prolific growth and widespread distribution. Accurate and timeous detection and mapping of Bramble is therefore critical to the development of effective eradication management plans. Hence, this study sought to determine the potential of freely available, new generation medium spatial resolution satellite imagery for the detection and mapping of American Bramble infestations within the UNESCO world heritage site of the uKhahlamba Drakensberg Park (UDP). The first part of the thesis determined the potential of conventional freely available remote sensing imagery for the detection and mapping of Bramble. Utilizing the Support Vector Machine (SVM) learning algorithm, it was established that Bramble could be detected with limited users (45%) and reasonable producers (80%) accuracies. Much of the confusion occurred between the grassland land cover class and Bramble. The second part of the study focused on fusing the new age optical imagery and Synthetic Aperture Radar (SAR) imagery for Bramble detection and mapping. The synergistic potential of fused imagery was evaluated using multiclass SVM classification algorithm. Feature level image fusion of optical imagery and SAR resulted in an overall classification accuracy of 76%, with increased users and producers’ accuracies for Bramble. These positive results offered an opportunity to explore the polarization variables associated with SAR imagery for improved classification accuracies. The final section of the study dwelt on the use of Vegetation Indices (VIs) derived from new age satellite imagery, in concert with SAR to improve Bramble classification accuracies. Whereas improvement in classification accuracies were minimal, the potential of stand-alone VIs to detect and map Bramble (80%) was noteworthy. Lastly, dual-polarized SAR was fused with new age optical imagery to determine the synergistic potential of dual-polarized SAR to increase Bramble mapping accuracies. Results indicated a marked increase in overall Bramble classification accuracy (85%), suggesting improved potential of dual-polarized SAR and optical imagery in invasive species detection and mapping. Overall, this study provides sufficient evidence of the complimentary and synergistic potential of active and passive remote sensing imagery for invasive alien species detection and mapping. Results of this study are important for supporting contemporary decision making relating to invasive species management and eradication in order to safeguard ecological biodiversity and pristine status of nationally protected areas

Remote-Sensing Detection of Invasive Chinese Tallow (Triadica sebifera) in a Floodplain Environment

Chinese tallow (Tradica sebifera) is an established invasive species in many southern woodlands in the United States. Its ability to adapt and spread quickly into disturbed areas has made it an invasive species of much concern to land managers. Riparian/floodplain environments have been affected by tallow as much as upland areas and entail a high degree of Chinese tallow invasion. Remote sensing is a tool that may provide a means of detecting, or classifying, Chinese tallow. There have been very few studies that have attempted to map Chinese tallow in a floodplain environment. This research focused on mapping Chinese tallow on a single river meander bend. The purpose of this study was to determine which of the nonparametric detection methods considered, such as Multivariate Regression Splines (MARS), Stochastic Gradient Boosting (SGB) and the Random Forest (RF) models, as well as common spectral-extraction algorithms, were able to most accurately detect Chinese tallow in a floodplain forest based on remote-sensing data. In addition, it was the purpose of this study to attempt to determine factors affecting tallow growth and spread, and to map the spatial distribution of tallow in the study area. Fieldwork was conducted in 2010 and 2014 to acquire Chinese tallow presence/absence information to be used for classification model training and testing. A hyperspectral Hyperion satellite image from summer 2010 constituted the primary remote-sensing data source, as well as airborne LiDAR data. The three nonparametric models tested were used to predict Chinese tallow occurrences in the study area. A variety of input variables were employed in the modeling process, including: Hyperion image bands, dimensionality-reduced Minimum Noise Fraction (MNF) images, vegetation indices, and topographic and soil variables. An endmember-based approach was also used to classify tallow presence but was not very successful. Results show that the most accurate dataset-combination trials involving both SGB and MARS yield high overall classification accuracy, 92.85%, whereas the most accurate RF dataset-combination trial provides lower overall classification accuracy, at 80%. Both spatial and aspatial statistical analyses were performed on the classification results. Significance testing indicates that the most accurate RF classification is not statistically significantly different from the most accurate SGB and MARS classifications. However, other error matrix significance testing finds the most accurate RF classification to be statistically significantly different from the most accurate SGB and MARS Chinese tallow classifications. A hot-spot analysis revealed that homogenous areas classified as tallow or as non-tallow can be detected and identified. Results from this study are promising in many areas of the meander bend, such as the transition zone where tallow is prevalent but less so in areas that have more established forest. Some methods tested were successful in detecting tallow and their use may aid land managers in the managing Chinese tallow growth and spread

Remote Sensing of Plant Biodiversity

This Open Access volume aims to methodologically improve our understanding of biodiversity by linking disciplines that incorporate remote sensing, and uniting data and perspectives in the fields of biology, landscape ecology, and geography. The book provides a framework for how biodiversity can be detected and evaluated—focusing particularly on plants—using proximal and remotely sensed hyperspectral data and other tools such as LiDAR. The volume, whose chapters bring together a large cross-section of the biodiversity community engaged in these methods, attempts to establish a common language across disciplines for understanding and implementing remote sensing of biodiversity across scales. The first part of the book offers a potential basis for remote detection of biodiversity. An overview of the nature of biodiversity is described, along with ways for determining traits of plant biodiversity through spectral analyses across spatial scales and linking spectral data to the tree of life. The second part details what can be detected spectrally and remotely. Specific instrumentation and technologies are described, as well as the technical challenges of detection and data synthesis, collection and processing. The third part discusses spatial resolution and integration across scales and ends with a vision for developing a global biodiversity monitoring system. Topics include spectral and functional variation across habitats and biomes, biodiversity variables for global scale assessment, and the prospects and pitfalls in remote sensing of biodiversity at the global scale