Classification of Medical Data Based On Sparse Representation Using Dictionary Learning

Due to the increase in the sources of image acquisition and storage capacity, the search for relevant information in large medical image databases has become more challenging. Classification of medical data into different categories is an important task, and enables efficient cataloging and retrieval with large image collections. The medical image classification systems available today classify medical images based on modality, body part, disease or orientation. Recent work in this direction seek to use the semantics of medical data to achieve better classification. However, representation of semantics is a challenging task and sparse representation has been explored in this thesis for this task

Radio Continuum Surveys with Square Kilometre Array Pathfinders

In the lead-up to the Square Kilometre Array (SKA) project, several next-generation radio telescopes and upgrades are already being built around the world. These include APERTIF (The Netherlands), ASKAP (Australia), e-MERLIN (UK), VLA (USA), e-EVN (based in Europe), LOFAR (The Netherlands), MeerKAT (South Africa), and the Murchison Widefield Array. Each of these new instruments has different strengths, and coordination of surveys between them can help maximise the science from each of them. A radio continuum survey is being planned on each of them with the primary science objective of understanding the formation and evolution of galaxies over cosmic time, and the cosmological parameters and large-scale structures which drive it. In pursuit of this objective, the different teams are developing a variety of new techniques, and refining existing ones. To achieve these exciting scientific goals, many technical challenges must be addressed by the survey instruments. Given the limited resources of the global radio-astronomical community, it is essential that we pool our skills and knowledge. We do not have sufficient resources to enjoy the luxury of re-inventing wheels. We face significant challenges in calibration, imaging, source extraction and measurement, classification and cross-identification, redshift determination, stacking, and data-intensive research. As these instruments extend the observational parameters, we will face further unexpected challenges in calibration, imaging, and interpretation. If we are to realise the full scientific potential of these expensive instruments, it is essential that we devote enough resources and careful study to understanding the instrumental effects and how they will affect the data. We have established an SKA Radio Continuum Survey working group, whose prime role is to maximise science from these instruments by ensuring we share resources and expertise across the projects. Here we describe these projects, their science goals, and the technical challenges which are being addressed to maximise the science return

Caracterización de Patrones Anormales en Mamografías

Abstract. Computer-guided image interpretation is an extensive research area whose main purpose is to provide tools to support decision-making, for which a large number of automatic techniques have been proposed, such as, feature extraction, pattern recognition, image processing, machine learning, among others. In breast cancer, the results obtained at this area, they have led to the development of diagnostic support systems, which have even been approved by the FDA (Federal Drug Administration). However, the use of those systems is not widely extended in clinic scenarios, mainly because their performance is unstable and poorly reproducible. This is due to the high variability of the abnormal patterns associated with this neoplasia. This thesis addresses the main problem associated with the characterization and interpretation of breast masses and architectural distortion, mammographic findings directly related to the presence of breast cancer with higher variability in their form, size and location. This document introduces the design, implementation and evaluation of strategies to characterize abnormal patterns and to improve the mammographic interpretation during the diagnosis process. The herein proposed strategies allow to characterize visual patterns of these lesions and the relationship between them to infer their clinical significance according to BI-RADS (Breast Imaging Reporting and Data System), a radiologic tool used for mammographic evaluation and reporting. The obtained results outperform some obtained by methods reported in the literature both tasks classification and interpretation of masses and architectural distortion, respectively, demonstrating the effectiveness and versatility of the proposed strategies.Resumen. La interpretación de imágenes guiada por computador es una área extensa de investigación cuyo objetivo principal es proporcionar herramientas para el soporte a la toma de decisiones, para lo cual se han usado un gran número de técnicas de extracción de características, reconocimiento de patrones, procesamiento de imágenes, aprendizaje de máquina, entre otras. En el cáncer de mama, los resultados obtenidos en esta área han dado lugar al desarrollo de sistemas de apoyo al diagnóstico que han sido incluso aprobados por la FDA (Federal Drug Administration). Sin embargo, el uso de estos sistemas no es ampliamente extendido, debido principalmente, a que su desempeño resulta inestable y poco reproducible frente a la alta variabilidad de los patrones anormales asociados a esta neoplasia. Esta tesis trata el principal problema asociado a la caracterización y análisis de masas y distorsión de la arquitectura debido a que son hallazgos directamente relacionados con la presencia de cáncer y que usualmente presentan mayor variabilidad en su forma, tamaño y localización, lo que altera los resultados diagnósticos. Este documento introduce el diseño, implementación y evaluación de un conjunto de estrategias para caracterizar patrones anormales relacionados con este tipo de hallazgos para mejorar la interpretación y soportar el diagnóstico mediante la imagen mamaria. Los modelos aquí propuestos permiten caracterizar patrones visuales y la relación entre estos para inferir su significado clínico según el estándar BI-RADS (Breast Imaging Reporting and Data System) usado para la evaluación y reporte mamográfico. Los resultados obtenidos han demostrado mejorar a los resultados obtenidos por los métodos reportados en la literatura en tareas como clasificación e interpretación de masas y distorsión arquitectural, demostrando la efectividad y versatilidad de las estrategia propuestas.Doctorad

Cloud removal from optical remote sensing images

Optical remote sensing images used for Earth surface observations are constantly contaminated by cloud cover. Clouds dynamically affect the applications of optical data and increase the difficulty of image analysis. Therefore, cloud is considered as one of the sources of noise in optical image data, and its detection and removal need to be operated as a pre-processing step in most remote sensing image processing applications. This thesis investigates the current cloud detection and removal algorithms and develops three new cloud removal methods to improve the accuracy of the results. A thin cloud removal method based on signal transmission principles and spectral mixture analysis (ST-SMA) for pixel correction is developed in the first contribution. This method considers not only the additive reflectance from the clouds but also the energy absorption when solar radiation passes through them. Data correction is achieved by subtracting the product of the cloud endmember signature and the cloud abundance and rescaling according to the cloud thickness. The proposed method has no requirement for meteorological data and does not rely on reference images. The experimental results indicate that the proposed approach is able to perform effective removal of thin clouds in different scenarios. In the second study, an effective cloud removal method is proposed by taking advantage of the noise-adjusted principal components transform (CR-NAPCT). It is found that the signal-to-noise ratio (S/N) of cloud data is higher than data without cloud contamination, when spatial correlation is considered and are shown in the first NAPCT component (NAPC1) in the NAPCT data. An inverse transformation with a modified first component is then applied to generate the cloud free image. The effectiveness of the proposed method is assessed by performing experiments on simulated and real data to compare the quantitative and qualitative performance of the proposed approach. The third study of this thesis deals with both cloud and cloud shadow problems with the aid of an auxiliary image in a clear sky condition. A new cloud removal approach called multitemporal dictionary learning (MDL) is proposed. Dictionaries of the cloudy areas (target data) and the cloud free areas (reference data) are learned separately in the spectral domain. An online dictionary learning method is then applied to obtain the two dictionaries in this method. The removal process is conducted by using the coefficients from the reference image and the dictionary learned from the target image. This method is able to recover the data contaminated by thin and thick clouds or cloud shadows. The experimental results show that the MDL method is effective from both quantitative and qualitative viewpoints