Identification of meat spoilage gene biomarkers in Pseudomonas putida using gene profiling

While current food science research mainly focuses on microbial changes in food products that lead to foodborne illnesses, meat spoilage remains as an unsolved problem for the meat industry. This can result in important economic losses, food waste and loss of consumer confidence in the meat market. Gram-negative bacteria involved in meat spoilage are aerobes or facultative anaerobes. These represent the group with the greatest meat spoilage potential, where Pseudomonas tend to dominate the microbial consortium under refrigeration and aerobic conditions. Identifying stress response genes under different environmental conditions can help researchers gain an understanding of how Pseudomonas adapts to current packaging and storage conditions. We examined the gene expression profile of Pseudomonas putida KT2440, which plays an important role in the spoilage of meat products. Gene expression profiles were evaluated to select the most differentially expressed genes at different temperatures (30 °C and 10 °C) and decreasing glucose concentrations, in order to identify key genes actively involved with the spoilage process. A total of 739 and 1269 were found to be differentially expressed at 30 °C and 10 °C respectively; of which 430 and 568 genes were overexpressed, and 309 and 701 genes were repressed at 30 °C and 10 °C respectively

Intraclass image augmentation for defect detection using generative adversarial neural networks

Surface defect identification based on computer vision algorithms often leads to inadequate generalization ability due to large intraclass variation. Diversity in lighting conditions, noise components, defect size, shape, and position make the problem challenging. To solve the problem, this paper develops a pixel-level image augmentation method that is based on image-to-image translation with generative adversarial neural networks (GANs) conditioned on fine-grained labels. The GAN model proposed in this work, referred to as Magna-Defect-GAN, is capable of taking control of the image generation process and producing image samples that are highly realistic in terms of variations. Firstly, the surface defect dataset based on the magnetic particle inspection (MPI) method is acquired in a controlled environment. Then, the Magna-Defect-GAN model is trained, and new synthetic image samples with large intraclass variations are generated. These synthetic image samples artificially inflate the training dataset size in terms of intraclass diversity. Finally, the enlarged dataset is used to train a defect identification model. Experimental results demonstrate that the Magna-Defect-GAN model can generate realistic and high-resolution surface defect images up to the resolution of 512 × 512 in a controlled manner. We also show that this augmentation method can boost accuracy and be easily adapted to any other surface defect identification models

Geochronology of Mexican mineral deposits. II: Veta Madre and Sierra epithermal vein systems, Guanajuato district

This paper presents two new high-resolution geochronological determinations for the epithermal deposits in the World-class Guanajuato mining district, in central Mexico. These are a Rb-Sr isochron age in illite at 28.47 ± 0.55 Ma for the Villalpando and San Juan de Dios low sulfidation veins of the Sierra group of veins, and a 40Ar/39Ar plateau age in adularia ("valencianite") at 30.20 ± 0.17 Ma for the La Valenciana ore shoot of the famous Veta Madre intermediate sulfidation vein. These determinations have greater accuracy, precision and trueness than the preexisting K-Ar determinations for similar adularia samples. The accuracy of such determinations supports the idea of a diachronic emplacement of intermediate and low sulfidation deposits in this district, the former being older than the latter, similar to other epithermal deposits in Mexico. Also, the ~2 m.yr. span between the Veta Madre and Sierra groups of epithermal veins is in agreement with other case studies, regardless of the size of the deposit

Connectivity, neutral theories and the assessment of species vulnerability to global change in temperate estuaries

One of the main adaptation strategies to global change scenarios, aiming to preserve ecosystem functioning and biodiversity, is to maximise ecosystem resilience. The resilience of a species metapopulation can be improved by facilitating connectivity between local populations, which will prevent demographic stochasticity and inbreeding. The objective of this investigation is to estimate the degree of connectivity among estuarine species along the north-eastern Iberian coast, in order to assess community vulnerability to global change scenarios. To address this objective, two connectivity proxy types have been used based upon genetic and ecological drift processes: 1) DNA markers for the bivalve cockle (Cerastoderma edule) and seagrass Zostera noltei, and 2) the decrease in the number of species shared between two sites with geographic distance; neutral biodiversity theory predicts that dispersal limitation modulates this decrease, and this has been explored in estuarine plants and macroinvertebrates. Results indicate dispersal limitation for both saltmarsh plants and seagrass beds community and Z. noltei populations; this suggests they are especially vulnerable to expected climate changes on their habitats. In contrast, unstructured spatial pattern found in macroinvertebrate communities and in C. edule genetic populations in the area suggests that estuarine soft-bottom macroinvertebrates with planktonic larval dispersal strategies may have a high resilience capacity to moderate changes within their habitats. Our findings can help environmental managers to prioritise the most vulnerable species and habitats to be restored

Structural Evolution of a Composite Middle to Lower Crustal Section: The Sierra de Pie de Palo, Northwest Argentina

The Sierra de Pie de Palo of northwest Argentina preserves middle to lower crustal metamorphic rocks that were penetratively deformed during Ordovician accretion of the Precordillera terrane to the Gondwana margin. New structural, petrologic, and geochronologic data from a 40 km structural transect reveals that the Sierra de Pie de Palo preserves a middle to lower crustal ductile thrust complex consisting of individual structural units and not an intact ophiolite and cover sequence. Top-to-the-west thrusting occurred intermittently on discrete ductile shear zones from ∼515 to ∼417 Ma and generally propagated toward the foreland with progressive deformation. Ordovician crustal shortening and peak metamorphic temperatures in the central portion of the Sierra de Pie de Palo were synchronous with retro-arc shortening and magmatic flare-up within the Famatina arc. Accretion of the Precordillera terrane resulted in the end of arc flare-up and the onset of synconvergent extension by ∼439 Ma. Continued synextensional to postextensional convergence was accommodated along progressively lower grade shear zones following terrane accretion and the establishment of a new plate margin west of the Precordillera terrane. The results support models of Cordilleran orogens that link voluminous arc magmatism to periods of regional shortening. The deformation, metamorphic, and magmatic history within the Sierra de Pie de Palo is consistent with models placing the region adjacent to the Famatina margin in the middle Cambrian and not as basement to the Precordillera terrane

Predictive characterization of crop wild relatives and landraces: technical guidelines version 1

Predictive characterization methods use ecogeographical and climatic data derived from the specific location of a collecting or observation site, to predict characteristics of accessions and populations that can inform conservation and use options. The predictive characterization methods presented in these technical guidelines for crop wild relatives (CWR) and landraces (LR) aim to enhance the use of CWR and LR through identification of sets of accessions or occurrences that have a higher likelihood of harbouring genetic diversity for specific adaptive traits than a set selected at random. The methods presented are the ecogeographical filtering and the calibration method. These are two of the various methods that implement the Focused Identification of Germplasm Strategy (FIGS). The guidelines were developed within the framework of the EU funded project PGR Secure ‘Novel characterization of crop wild relative and landrace resources as a basis for improved crop breeding’

Primitive Cretaceous island-arc volcanic rocks in eastern Cuba : the Téneme Formation

The Téneme Formation is located in the Mayarí-Cristal ophiolitic massif and represents one of the three Cretaceous volcanic Formations established in northeastern Cuba. Téneme volcanics are cut by small bodies of 89.70 ± 0.50 Ma quarz-diorite rocks (Río Grande intrusive), and are overthrusted by serpentinized ultramafics. Téneme volcanic rocks are mainly basalts, basaltic andesites, andesites, and minor dacites, and their geochemical signature varies between low-Ti island arc tholeiites (IAT) with boninitic affinity (TiO2 < 0.4 %; high field strength elements « N-type MORB) and typical oceanic arc tholeiites (TiO2 = 0.5-0.8 %). Basaltic rocks exhibit low light REE/Yb ratios (La/Yb < 5), typical of intraoceanic arcs and are comparable to Maimón Formation in Dominican Republic (IAT, pre Albian) and Puerto Rican lavas of volcanic phase I (island arc tholeiites, Aptian to Early Albian). The mantle wedge signature of the Téneme Formation indicates a highly depleted MORB-type mantle source, without any contribution of E-MORB or OIB components. Our results suggest that Téneme volcanism represents a primitive oceanic island arc environment. If the Late Cretaceous age (Turonian or early Coniacian) proposed for Téneme Formation is correct, our results indicate that the Cretaceous volcanic rocks of eastern Cuba and the Dominican Republic are not segments of a single arc system, and that in Late Cretaceous (Albian-Campanian) Caribbean island arc development is not represented only by calc-alkaline (CA) volcanic rocks as has been suggested in previous works

Megrim (Lepidorhombus whiffiagonis) weight-length relationships in the northern Bay of Biscay and Celtic Sea

The weight-length relationships are of a great interest in fish biology, stock assessment and fishery management, by predicting weight from length information and allowing to estimate the stock biomass. Weight-length relationships of megrim (Lepidorhombus whiffiagonis), an economically relevant flatfish species, are studied for two decades (2001 to 2019) in northern Bay of Biscay and Celtic Sea (ICES stock Div. 7.b-k, 8.abd), two important European fishing areas. More than 22000 specimens collected from commercial landings by AZTI and IEO were sampled. Total fish length, total weight and commercial gutted weight were obtained. Four five-year periods (quinquennium) (2000-04; 2005-09; 2010-14; 2015-19) were defined in the studied time-series. Both the large sample size and time-series available, as well as the collaboration between both institutions collecting complementary information from this stock, allowed obtaining robust somatic parameters and analyzing their temporal variations. A weight-length relationship model was fitted and the quinquennium and semester factors, which are of interest biologically and for assessment purposes, and their interactions were significant in the preliminary model. The weight-length relationships, both for total and gutted weight and for the combined sexes of the most recent quinquennium are presented in this work and considered the most suitable to be used in the oncoming annual assessment process of the status of this stock in northern Bay of Biscay and Celtic Sea in ICES

New remains of Nothrotheriinae (Mammalia, Xenarthra) from Late Pleistocene fluvial deposits of Northern Pampa (Santa Fe Province, Argentina)

In this contribution the record of a Nothrotheriinae (Xenarthra, Tardigrada) ground sloth is reported from the Late Pleistocene of the Northern Pampa of Santa Fe Province, Argentina. The stratigraphic unit where the fossil was collected corresponds to fluvial-palustrine sediments of the Timbúes Formation, outcropping along the Carcarañá River valley. The relative stratigraphic position of this lithostratigraphic unit, observed in several sections mainly on the Paraná River cliffs near Carcarañá River distal area, suggests that it was deposited during the Last Interglacial Stage. The specimen (MPAHND-135), assigned to Nothrotherium cf. torresi, is represented by the proximal two-thirds of a left femur that shows a prominent lesser trochanter and no connection between the third trochanter and the ectepicondyle. The presence of Nothrotherium cf. torresi in sediments related to humid conditions supports the idea that Nothrotheriinae had great ecological tolerance and was capable of inhabiting climates ranging from cold and arid, as was previously proposed, to warm and humid.Fil: Vezzosi, Raúl Ignacio. Provincia de Entre Ríos. Centro de Investigaciones Científicas y Transferencia de Tecnología a la Producción. Universidad Autónoma de Entre Ríos. Centro de Investigaciones Científicas y Transferencia de Tecnología a la Producción. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Centro de Investigaciones Científicas y Transferencia de Tecnología a la Producción; ArgentinaFil: Brandoni, Diego. Provincia de Entre Ríos. Centro de Investigaciones Científicas y Transferencia de Tecnología a la Producción. Universidad Autónoma de Entre Ríos. Centro de Investigaciones Científicas y Transferencia de Tecnología a la Producción. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Centro de Investigaciones Científicas y Transferencia de Tecnología a la Producción; ArgentinaFil: Brunetto, Ernesto. Provincia de Entre Ríos. Centro de Investigaciones Científicas y Transferencia de Tecnología a la Producción. Universidad Autónoma de Entre Ríos. Centro de Investigaciones Científicas y Transferencia de Tecnología a la Producción. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Centro de Investigaciones Científicas y Transferencia de Tecnología a la Producción; ArgentinaFil: Zalazar, Maria Cecilia. Universidad Nacional del Litoral; Argentin