Web-Based, Deep Learning Assisted Medical Image Tagging Tool

One of the biggest challenges when building supervised machine learning models is to obtain the desired dataset along with its respective annotations. This is especially true in the medical field where all data produced is expected to be consumed by a human being instead of a machine. More often than not, the data can be found only by itself and data scientists are burdened with the task of manually creating the tags for it, a tedious and time-consuming task. This project aims to speed up the process of manually annotating regions of interest (ROI) in images from computed tomography (CT) scans by leveraging fully convolutional deep networks and web technologies. A partially trained deep learning model suggests ROI to the user who evaluate and adjust them. These corrected images can then be fed to the model as ground truths to continue training. The end result of this process is the tagged dataset and a fully trained machine learning model for predicting ROI in CT scans. In an experiment performed with the help of a medically trained volunteer, tagging images aided by a model trained with 2.3% of the dataset resulted in a 7x speedup over the manual process

Guía de diseño estructural de torres de telecomunicaciones auto soportadas en Colombia para alturas de 20, 30 y 40 metros

Trabajo de InvestigaciónSe trata de una guía de diseño estructural de torres de telecomunicaciones autosoportadas para el medio colombiano, utilizando las normas ANSI/TIA 222G y NSR-10. Para el desarrollo de la guía se diseñan tres torres de 20, 30 y 40 metros, usando software especializado e incluyendo memorias de calculo, planos estructurales y presupuestoINTRODUCCIÓN 1. GENERALIDADES 2. ESTADO DEL ARTE 3. ALCANCE Y LIMITACIONES 4. OBJETIVOS 5. METODOLOGÍA 6. MARCO DE REFERENCIA 7. MARCO TEÓRICO 8. RESULTADOS 9. ANALISIS DE RESULTADOS 10. ESTRATEGIAS DE COMUNICACIÓN Y DIVULGACIÓN 11. CONCLUSIONES 12. RECOMENDACIONES 13. BIBLIOGRAFÍA 14. RELACIÓN DE ANEXOSPregradoIngeniero Civi

The aflatoxin B1-fumonisin B1 toxicity in BRL-3A hepatocytes is associated to induction of cytochrome P450 activity and arachidonic acid metabolism

Human oral exposure to aflatoxin B1 (AFB1) and fumonisin B1 (FB1) is associated with increased hepatocellular carcinoma. Although evidence suggested interactive AFB1–FB1 hepatotoxicity, the underlying mechanisms remain mostly unidentified. This work was aimed at evaluating the possible AFB1–FB1 interplay to induce genetic and cell cycle toxicities in BRL-3A rat hepatocytes, reactive oxygen species (ROS) involvement, and the AFB1 metabolizing pathways cytochrome P450 (CYP) and arachidonic acid (ArAc) metabolism as ROS contributors. Flow cytometry of stained BRL-3A hepatocytes was used to study the cell cycle (propidium iodide), ROS intracellular production (DCFH-DA, HE, DAF-2 DA), and phospholipase A activity (staining with bis-BODIPY FL C11-PC). The CYP1A activity was assessed by the 7-ethoxyresorufin-O-deethylase (EROD) assay. Despite a 48-h exposure to FB1 (30 μM) not being genotoxic, the AFB1 (20 μM)-induced micronucleus frequency was overcome by the AFB1–FB1 mixture (MIX), presumably showing toxin interaction. The mycotoxins blocked G1/S-phase, but only MIX caused cell death. Overall, the oxidative stress led these alterations as the pretreatment with N-acetyl-l-cysteine reduced such toxic effects. While AFB1 had a major input to the MIX pro-oxidant activity, with CYP and ArAc metabolism being ROS contributors, these pathways were not involved in the FB1-elicited weak oxidative stress. The MIX-induced micronucleus frequency in N-acetyl-l-cysteine pretreated cells was greater than that caused by AFB1 without antioxidants, suggesting enhanced AFB1 direct genotoxicity probably owing to the higher CYP activity and ArAc metabolism found in MIX. The metabolic pathways modulation by AFB1–FB1 mixtures could raise its hepatocarcinogenic properties.Fil: Mary, Verónica Sofía. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Córdoba. Centro de Investigaciones en Bioquímica Clínica e Inmunología; ArgentinaFil: Arias, Silvina Lorena. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Córdoba. Centro de Investigaciones en Bioquímica Clínica e Inmunología; ArgentinaFil: Otaiza González, Santiago Nicolás. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Córdoba. Centro de Investigaciones en Bioquímica Clínica e Inmunología; ArgentinaFil: Velez, Pilar Andrea. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Córdoba. Centro de Investigaciones en Bioquímica Clínica e Inmunología; ArgentinaFil: Rubinstein, Héctor Ramón. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Córdoba. Centro de Investigaciones en Bioquímica Clínica e Inmunología; ArgentinaFil: Theumer, Martín Gustavo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Córdoba. Centro de Investigaciones en Bioquímica Clínica e Inmunología; Argentin

Where does the peanut smut pathogen, Thecaphora frezii, fit in the spectrum of smut diseases?

Smut fungi, such as Ustilago maydis, have been studied extensively as a model for plant-pathogenic basidiomycetes. However, little attention has been paid to smut diseases of agronomic importance that are caused by species of the genus Thecaphora, probably due to their more localized distribution. Peanut smut incited by Thecaphora frezii has been reported only in South America, and Argentina is the only country where this disease has been noted in commercial peanut production. In this work, important advances in deciphering T. frezii specific biology/pathobiology in relation to potato (T. solani), wheat (U. tritici), and barley (U. nuda) smuts are presented. We summarize the state of knowledge of fungal effectors, functionally characterized to date in U. maydis and most recently in T. thlaspeos, as well as the potential to be present in other Thecaphora species involved in dicot-host interactions like T. frezii-peanut. We also discuss applicability and limitations of currently available methods for identification of smut fungi in different situations and management strategies to reduce their impact on agri-food quality. We conclude by describing some of the challenges in elucidating T. frezii strategies that allow it to infect the host and tolerate or evade plant immune defense mechanisms, and assessing other aspects related to pest control and their implications for human health.Fil: Arias, Silvina Lorena. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Córdoba. Centro de Investigaciones en Bioquímica Clínica e Inmunología; Argentina. University of Iowa; Estados UnidosFil: Mary, Verónica Sofía. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Córdoba. Centro de Investigaciones en Bioquímica Clínica e Inmunología; Argentina. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Departamento de Bioquímica Clínica; ArgentinaFil: Velez, Pilar Andrea. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Departamento de Bioquímica Clínica; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Córdoba. Centro de Investigaciones en Bioquímica Clínica e Inmunología; ArgentinaFil: Rodriguez, María G.. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Departamento de Bioquímica Clínica; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Córdoba. Centro de Investigaciones en Bioquímica Clínica e Inmunología; ArgentinaFil: Otaiza González, Santiago Nicolás. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Córdoba. Centro de Investigaciones en Bioquímica Clínica e Inmunología; Argentina. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Departamento de Bioquímica Clínica; ArgentinaFil: Theumer, Martín Gustavo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Córdoba. Centro de Investigaciones en Bioquímica Clínica e Inmunología; Argentina. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Departamento de Bioquímica Clínica; Argentin

Time to Treatment Prediction in Chronic Lymphocytic Leukemia Based on New Transcriptional Patterns

Chronic lymphocytic leukemia (CLL) is the most frequent lymphoproliferative syndrome in western countries. CLL evolution is frequently indolent, and treatment is mostly reserved for those patients with signs or symptoms of disease progression. In this work, we used RNA sequencing data from the International Cancer Genome Consortium CLL cohort to determine new gene expression patterns that correlate with clinical evolution.We determined that a 290-gene expression signature, in addition to immunoglobulin heavy chain variable region (IGHV) mutation status, stratifies patients into four groups with notably different time to first treatment. This finding was confirmed in an independent cohort. Similarly, we present a machine learning algorithm that predicts the need for treatment within the first 5 years following diagnosis using expression data from 2,198 genes. This predictor achieved 90% precision and 89% accuracy when classifying independent CLL cases. Our findings indicate that CLL progression risk largely correlates with particular transcriptomic patterns and paves the way for the identification of high-risk patients who might benefit from prompt therapy following diagnosis.S

Spain: Underwater Exploration on a Narrow Continental Shelf

In spite of Spain’s long coastline (nearly 8000 km) and its well-established tradition in underwater archaeology, the prehistoric settlement of the continental shelf is practically unknown with very few finds. Underwater research has focused on naval archaeology and, until very recently, no attempt had been made to look for prehistoric underwater sites. In the past decade,new research projects have been launched to explore selected areas on the Cantabrian shelf and offshore of Gibraltar. This chapter summarises the currently available evidence of submerged prehistoric archaeology and the preliminary results of these new project

Anti-Spike antibodies 3 months after SARS-CoV-2 mRNA vaccine booster dose in patients on hemodialysis: the prospective SENCOVAC study

Background: Patients on hemodialysis are at high-risk for complications derived from coronavirus disease 2019 (COVID-19). The present analysis evaluated the impact of a booster vaccine dose and breakthrough severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections on humoral immunity 3 months after the booster dose. Methods: This is a multicentric and prospective study assessing immunoglobulin G anti-Spike antibodies 6 and 9 months after initial SARS-CoV-2 vaccination in patients on hemodialysis that had also received a booster dose before the 6-month assessment (early booster) or between the 6- and 9-month assessments (late booster). The impact of breakthrough infections, type of vaccine, time from the booster and clinical variables were assessed. Results: A total of 711 patients [67% male, median age (range) 67 (20-89) years] were included. Of these, 545 (77%) received an early booster and the rest a late booster. At 6 months, 64 (9%) patients had negative anti-Spike antibody titers (3% of early booster and 29% of late booster patients, P =. 001). At 9 months, 91% of patients with 6-month negative response had seroconverted and there were no differences in residual prevalence of negative humoral response between early and late booster patients (0.9% vs 0.6%, P =. 693). During follow-up, 35 patients (5%) developed breakthrough SARS-CoV-2 infection. Antibody titers at 9 months were independently associated with mRNA-1273 booster (P =. 001), lower time from booster (P =. 043) and past breakthrough SARS-CoV-2 infection (P <. 001). Conclusions: In hemodialysis patients, higher titers of anti-Spike antibodies at 9 months were associated with mRNA-1273 booster, lower time from booster and past breakthrough SARS-CoV-2 infectionThe present project has been supported by Fresenius Medical Care, Diaverum, Vifor Pharma, Vircell, Fundación Renal Iñigo Álvarez de Toledo and ISCIII FEDER funds RICORS2040 (RD21/0005

Dilemas de la paz territorial en los tiempos del post-acuerdo: Experiencias territoriales en la región del eje cafetero

El presente libro, tejido a múltiples voces, perspectivas, abordajes teóricos y metodológicos, se inscribe en los proyectos editoriales de la región eje cafetero que se alejan de las lecturas dicotómicas o categóricas, por el contrario, transita los laberintos que se abren camino cuando una sociedad se traza la difícil tarea de construir una paz territorial en medio de los escenarios de la guerra. La memoria social, las voces de sobrevivientes, organizaciones sociales, medios de comunicación, posturas oficiales y cívicas, las apuestas pedagógicas por la paz, las lecturas territoriales del conflicto y las múltiples secuelas de las variadas violencias constituyen los horizontes temáticos de los 12 capítulos del presente libro, interpretando las complejas realidades presentes en el corazón de la región cafetera. Resultado de multiplicidad de voces, formaciones disciplinares y experiencias vitales, así como de la diversidad de organizaciones, entidades y universidades que acogieron el llamado del ¨Programa de Investigación en Transiciones, Violencias y Memoria¨ para construir una apuesta editorial recreada en los marcos de la sociología relacional, las cuales, a partir de perspectivas históricas, críticas y situadas, adelantaron análisis situados en la región cafetera en los tiempos del postacuerdo.Ruta Pacífica de las Mujeres ; Sistema Universitario del Eje Cafetero ; Universidad Católica de Manizales ; Universidad Católica de Pereira ; Vicerrectoría de Investigaciones, Innovación y Extensión Editorial Universidad Tecnológica de Pereira Pereira, Colombia.CONTENIDO Prólogo ....................................................................................................................6 Jefferson Jaramillo Marín Encrucijadas de una paz inacabada. A manera de introducción.....................12 Por: Luis Adolfo Martínez Herrera y Oscar Arango Gaviria PARTE I................................................................................................................20 Las tensiones de la memoria histórica y de los medios de comunicación en el contexto regional ..................................................................................................20 CAPÍTULO UNO.................................................................................................21 La memoria histórica en la región......................................................................22 Alberto Berón Ospina CAPÍTULO DOS .................................................................................................38 La mutación del periodismo en tiempos transicionales....................................39 Juan Antonio Ruiz Romero PARTE II..............................................................................................................73 Excombatientes, reintegrados y sobrevivientes del conflicto armado..............73 CAPÍTULO TRES...............................................................................................74 Una guerra silenciada: enunciaciones iniciales sobre los actores ...................75 y las dinámicas del conflicto armado en el Eje Cafetero ..................................75 Oscar Fernando Martínez Herrera y Miguel Gómez Bermeo CAPÍTULO CUATRO .....................................................................................106 Experiencia institucional de la Agencia para la Reincorporación y la Normalización en la atención de personas que se acogen a procesos de desarme, desmovilización, reintegración y reincorporación en el Eje Cafetero: 2003- 2020 .....................................................................................................................107 José Luis Medrano Benavides, Lina Marcela Duque Ossa, Oscar Fernando Sanmiguel CAPÍTULO CINCO..........................................................................................137 Entre víctimas y victimarios. Percepciones sociales de sobrevivientes del conflicto armado ................................................................................................................138 Luis Adolfo Martínez Herrera y Nicolás Muñoz Giraldo CAPÍTULO SEIS...............................................................................................173 Transición y reincorporación desde el Jimmy Tatamá: entre retórica y territorialidad.....................................................................................................174 Julio César Murillo García PARTE III...........................................................................................................197 Organizaciones sociales, historias y pedagogías regionales para la paz .......197 CAPÍTULO SIETE............................................................................................198 La Unión Patriótica: notas históricas sobre su acción política en el departamento de Risaralda, marzo 28 de 1984 - enero 6 de 1989 ..........................................199 Jahir Rodríguez Rodriguez CAPÍTULO OCHO ...........................................................................................250 Quinchía: memoria latente de un pueblo ultrajado. Reflexiones sobre la reparación simbólica..........................................................................................251 Gina M. Arias-Rodríguez y Érika V. Tobón-González CAPÍTULO NUEVE .........................................................................................279 La escuela de liderazgo para la paz: seis años al servicio dela educación para la paz ...................................................................................................................280 Oscar Arango Gaviria CAPÍTULO DIEZ..............................................................................................313 Una experiencia de formación para la paz ......................................................314 Claudia Mónica Londoño V. y Claudia Patricia Herrera G.. ........................314 PARTE IV...........................................................................................................338 Secuelas del conflicto armado y redefiniciones de las nociones de memoria y transiciones..........................................................................................................338 CAPÍTULO ONCE............................................................................................339 Comprensiones psicosociales sobre la desaparición forzada en Colombia...340 Mitzin Guadalupe Mata Mata y Mauricio Orozco Vallejo CAPÍTULO DOCE............................................................................................362 Narrativas, obsolescencias y hegemonías.........................................................363 Camilo Lozano River

Population-based multicase-control study in common tumors in Spain (MCC-Spain): rationale and study design

Introduction: We present the protocol of a large population-based case-control study of 5 common tumors in Spain (MCC-Spain) that evaluates environmental exposures and genetic factors. Methods: Between 2008-2013, 10,183 persons aged 20-85 years were enrolled in 23 hospitals and primary care centres in 12 Spanish provinces including 1,115 cases of a new diagnosis of prostate cancer, 1,750 of breast cancer, 2,171 of colorectal cancer, 492 of gastro-oesophageal cancer, 554 cases of chronic lymphocytic leukaemia (CLL) and 4,101 population-based controls matched by frequency to cases by age, sex and region of residence. Participation rates ranged from 57% (stomach cancer) to 87% (CLL cases) and from 30% to 77% in controls. Participants completed a face-to-face computerized interview on sociodemographic factors, environmental exposures, occupation, medication, lifestyle, and personal and family medical history. In addition, participants completed a self-administered food-frequency questionnaire and telephone interviews. Blood samples were collected from 76% of participants while saliva samples were collected in CLL cases and participants refusing blood extractions. Clinical information was recorded for cases and paraffin blocks and/or fresh tumor samples are available in most collaborating hospitals. Genotyping was done through an exome array enriched with genetic markers in specific pathways. Multiple analyses are planned to assess the association of environmental, personal and genetic risk factors for each tumor and to identify pleiotropic effects. Discussion: This study, conducted within the Spanish Consortium for Biomedical Research in Epidemiology & Public Health (CIBERESP), is a unique initiative to evaluate etiological factors for common cancers and will promote cancer research and prevention in Spain.The study was partially funded by the “Accion Transversal del Cancer”, approved on the Spanish Ministry Council on the 11th October 2007, by the Instituto de Salud Carlos III-FEDER (PI08/1770, PI08/0533, PI08/1359, PS09/00773, PS09/01286, PS09/01903, PS09/02078, PS09/01662, PI11/01403, PI11/01889, PI11/00226, PI11/01810, PI11/02213, PI12/00488, PI12/00265, PI12/01270, PI12/00715, PI12/00150), by the Fundación Marqués de Valdecilla (API 10/09), by the ICGC International Cancer Genome Consortium CLL, by the Junta de Castilla y León (LE22A10-2), by the Consejería de Salud of the Junta de Andalucía (PI-0571), by the Conselleria de Sanitat of the Generalitat Valenciana (AP 061/10), by the Recercaixa (2010ACUP 00310), by the Regional Government of the Basque Country by European Commission grants FOOD-CT- 2006-036224-HIWATE, by the Spanish Association Against Cancer (AECC) Scientific Foundation, by the The Catalan Government DURSI grant 2009SGR1489

The SADDEN DEATH Study: Results from a Pilot Study in Non-ICU COVID-19 Spanish Patients

Introduction: The worldwide pandemic, coronavirus disease 2019 (COVID-19) is a novel infection with serious clinical manifestations, including death. Our aim is to describe the first non-ICU Spanish deceased series with COVID-19, comparing specifically between unexpected and expected deaths. Methods: In this single-centre study, all deceased inpatients with laboratory-confirmed COVID-19 who had died from March 4 to April 16, 2020 were consecutively included. Demographic, clinical, treatment, and laboratory data, were analyzed and compared between groups. Factors associated with unexpected death were identified by multivariable logistic regression methods. Results: In total, 324 deceased patients were included. Median age was 82 years (IQR 76–87); 55.9% males. The most common cardiovascular risk factors were hypertension (78.4%), hyperlipidemia (57.7%), and diabetes (34.3%). Other common comorbidities were chronic kidney disease (40.1%), chronic pulmonary disease (30.3%), active cancer (13%), and immunosuppression (13%). The Confusion, BUN, Respiratory Rate, Systolic BP and age ≥65 (CURB-65) score at admission was >2 in 40.7% of patients. During hospitalization, 77.8% of patients received antivirals, 43.3% systemic corticosteroids, and 22.2% full anticoagulation. The rate of bacterial co-infection was 5.5%, and 105 (32.4%) patients had an increased level of troponin I. The median time from initiation of therapy to death was 5 days (IQR 3.0–8.0). In 45 patients (13.9%), the death was exclusively attributed to COVID-19, and in 254 patients (78.4%), both COVID-19 and the clinical status before admission contributed to death. Progressive respiratory failure was the most frequent cause of death (92.0%). Twenty-five patients (7.7%) had an unexpected death. Factors independently associated with unexpected death were male sex, chronic kidney disease, insulin-treated diabetes, and functional independence. Conclusions: This case series provides in-depth characterization of hospitalized non-ICU COVID-19 patients who died in Madrid. Male sex, insulin-treated diabetes, chronic kidney disease, and independency for activities of daily living are predictors of unexpected death