Fonctions génératrices des polynômes de Hartley des algèbres de Lie simples de rang 2.

Ce mémoire étudie deux familles de fonctions orthogonales, soit les fonctions d'orbite de Weyl et les fonctions d'orbite de Hartley. Chacune de ces familles est associée à une algèbre de Lie simple et cette recherche se limite aux algèbres A₂, C₂ et G₂ de rang 2. Les fonctions d'orbite de Weyl ont été largement étudiées depuis des années en raison de leurs propriétés exceptionnelles. Nouvellement, elles ont été utilisées pour générer des polynômes de Chebyshev généralisés et calculer les fonctions génératrices de ces polynômes pour les algèbres de Lie simples de rang 2. Les fonctions d'orbite de Hartley, quant à elles, ont été récemment introduites par Hrivnák et Juránek et l'étude de ces dernières ne fait que débuter. L'objectif de ce mémoire est de définir des polynômes de Chebyshev généralisés associés aux fonctions de Hartley et de calculer les fonctions génératrices de ceux-ci pour les algèbres A₂, C₂ et G₂. Le premier chapitre introduit les systèmes de racines et le groupe de Weyl, original et affine, ainsi que leurs domaines fondamentaux, afin que le lecteur ait les notations et définitions pour comprendre les chapitres suivants. Le deuxième chapitre présente et étudie les fonctions de Weyl. Il définit également leurs polynômes de Chebyshev généralisés et se termine en présentant les différentes fonctions génératrices de ces polynômes pour les algèbres de Lie simples de rang 2. Finalement, le troisième chapitre contient les résultats originaux; il expose les fonctions de Hartley et certaines de leurs propriétés. Il définit les polynômes de Chebyshev généralisés de celles-ci et énonce également leurs relations d'orthogonalité discrète. Il conclut en calculant les fonctions génératrices de ces polynômes pour les algèbres A₂, C₂ et G₂.This master's thesis studies two families of orthogonal functions, the Weyl orbit functions and the Hartley orbit functions. Each of these families is associated to a simple Lie algebra and the present work is limited to the algebras A₂, C₂ and G₂ of rank 2. Weyl orbit functions have been widely studied for years because of their exceptional properties. Recently, these properties have been used to generate generalized Chebyshev polynomials and to compute the generating functions of these polynomials for the simple Lie algebras of rank 2. Hartley orbit functions, on the other hand, were recently introduced by Hrivnák and Juránek and the study of the latter has only begun. The objective of this thesis is to define the generalized Chebyshev polynomials of Hartley orbit functions and to compute their generating functions for the algebras A₂, C₂ and G₂. The first chapter introduces root systems and the Weyl group, original and affine, and their fundamental domains, so that the reader has the notations and definitions at hand to read the following chapters. The second chapter introduces and studies Weyl orbit functions. It also defines their generalized Chebyshev polynomials and ends by presenting the different generating functions of these polynomials for simple Lie algebras of rank 2. Finally, the third chapter contains the original contribution; it presents the Hartley functions and some of their properties. It defines the generalized Chebyshev polynomials of these and also states their discrete orthogonality relations. It concludes by computing the generating functions of these polynomials for the algebras A₂, C₂ and G₂

Complementary network-based approaches for exploring genetic structure and functional connectivity in two vulnerable, endemic ground squirrels

The persistence of small populations is influenced by genetic structure and functional connectivity. We used two network-based approaches to understand the persistence of the northern Idaho ground squirrel (Urocitellus brunneus) and the southern Idaho ground squirrel (U. endemicus), two congeners of conservation concern. These graph theoretic approaches are conventionally applied to social or transportation networks, but here are used to study population persistence and connectivity. Population graph analyses revealed that local extinction rapidly reduced connectivity for the southern species, while connectivity for the northern species could be maintained following local extinction. Results from gravity models complemented those of population graph analyses, and indicated that potential vegetation productivity and topography drove connectivity in the northern species. For the southern species, development (roads) and small-scale topography reduced connectivity, while greater potential vegetation productivity increased connectivity. Taken together, the results of the two network-based methods (population graph analyses and gravity models) suggest the need for increased conservation action for the southern species, and that management efforts have been effective at maintaining habitat quality throughout the current range of the northern species. To prevent further declines, we encourage the continuation of management efforts for the northern species, whereas conservation of the southern species requires active management and additional measures to curtail habitat fragmentation. Our combination of population graph analyses and gravity models can inform conservation strategies of other species exhibiting patchy distributions

Geochemical evolution of the Critical Zone across variable time scales informs concentration-discharge relationships: Jemez River Basin Critical Zone Observatory

This study investigates the influence of water, carbon, and energy fluxes on solute production and transport through the Jemez Critical Zone (CZ) and impacts on C-Q relationships over variable spatial and temporal scales. Chemical depletion-enrichment profiles of soils, combined with regolith thickness and groundwater data indicate the importance to stream hydrochemistry of incongruent dissolution of silicate minerals during deep bedrock weathering, which is primarily limited by water fluxes, in this highly fractured, young volcanic terrain. Under high flow conditions (e.g., spring snowmelt), wetting of soil and regolith surfaces and presence of organic acids promote mineral dissolution and provide a constant supply of base cations, Si, and DIC to soil water and groundwater. Mixing of waters from different hydrochemical reservoirs in the near stream environment during “wet” periods leads to the chemostatic behavior of DIC, base cations, and Si in stream flow. Metals transported by organic matter complexation (i.e., Ge, Al) and/or colloids (i.e., Al) during periods of soil saturation and lateral connectivity to the stream display a positive relationship with Q. Variable Si-Q relationships, under all but the highest flow conditions, can be explained by nonconservative transport and precipitation of clay minerals, which influences long versus short-term Si weathering fluxes. By combining measurements of the CZ obtained across different spatial and temporal scales, we were able to constrain weathering processes in different hydrological reservoirs that may be flushed to the stream during hydrologic events, thereby informing C-Q relationships

Mobilizing in borderline citizenship regimes : a comparative analysis of undocumented migrants’ collective actions

This article seeks to explain how and why groups and networks of undocumented migrants mobilizing in Berlin, Montréal, and Paris since the beginning of the 2000s construct different types of claims. The authors explore the relationship between undocumented migrants and state authorities at the local level through the concept of the citizenship regime and its specific application to undocumented migrants (which they describe as the “borderline citizenship regime”). Despite their common formal exclusion from citizenship, nonstatus migrants experience different degrees and forms of exclusion in their daily lives, in terms of access to certain rights and services, recognition, and belonging within the state (whether through formally or nonformally recognized means). As a result, they have an opportunity to create different, specific forms of leeway in the society in which they live. The concurrence of these different degrees of exclusion and different forms of leeway defines specific conditions of mobilization. The authors demonstrate how the content of their claims is influenced by these conditions of mobilization

CO or no CO? Narrowing the CO abundance constraint and recovering the H2O detection in the atmosphere of WASP-127 b using SPIRou

Precise measurements of chemical abundances in planetary atmospheres are necessary to constrain the formation histories of exoplanets. A recent study of WASP-127b, a close-in puffy sub-Saturn orbiting its solar-type host star in 4.2 d, using HST and Spitzer revealed a feature-rich transmission spectrum with strong excess absorption at 4.5 um. However, the limited spectral resolution and coverage of these instruments could not distinguish between CO and/or CO2 absorption causing this signal, with both low and high C/O ratio scenarios being possible. Here we present near-infrared (0.9--2.5 um) transit observations of WASP-127 b using the high-resolution SPIRou spectrograph, with the goal to disentangle CO from CO2 through the 2.3 um CO band. With SPIRou, we detect H2O at a t-test significance of 5.3 sigma and observe a tentative (3 sigma) signal consistent with OH absorption. From a joint SPIRou + HST + Spitzer retrieval analysis, we rule out a CO-rich scenario by placing an upper limit on the CO abundance of log10[CO]<-4.0, and estimate a log10[CO2] of -3.7^(+0.8)_(-0.6), which is the level needed to match the excess absorption seen at 4.5um. We also set abundance constraints on other major C-, O-, and N-bearing molecules, with our results favoring low C/O (0.10^(+0.10)_(-0.06)), disequilibrium chemistry scenarios. We further discuss the implications of our results in the context of planet formation. Additional observations at high and low-resolution will be needed to confirm these results and better our understanding of this unusual world.Comment: 23 pages, 13 figures, Submitted for publication in the Monthly Notice of the Royal Astronomical Societ

Effect of natalizumab on disease progression in secondary progressive multiple sclerosis (ASCEND). a phase 3, randomised, double-blind, placebo-controlled trial with an open-label extension

Background: Although several disease-modifying treatments are available for relapsing multiple sclerosis, treatment effects have been more modest in progressive multiple sclerosis and have been observed particularly in actively relapsing subgroups or those with lesion activity on imaging. We sought to assess whether natalizumab slows disease progression in secondary progressive multiple sclerosis, independent of relapses. Methods: ASCEND was a phase 3, randomised, double-blind, placebo-controlled trial (part 1) with an optional 2 year open-label extension (part 2). Enrolled patients aged 18–58 years were natalizumab-naive and had secondary progressive multiple sclerosis for 2 years or more, disability progression unrelated to relapses in the previous year, and Expanded Disability Status Scale (EDSS) scores of 3·0–6·5. In part 1, patients from 163 sites in 17 countries were randomly assigned (1:1) to receive 300 mg intravenous natalizumab or placebo every 4 weeks for 2 years. Patients were stratified by site and by EDSS score (3·0–5·5 vs 6·0–6·5). Patients completing part 1 could enrol in part 2, in which all patients received natalizumab every 4 weeks until the end of the study. Throughout both parts, patients and staff were masked to the treatment received in part 1. The primary outcome in part 1 was the proportion of patients with sustained disability progression, assessed by one or more of three measures: the EDSS, Timed 25-Foot Walk (T25FW), and 9-Hole Peg Test (9HPT). The primary outcome in part 2 was the incidence of adverse events and serious adverse events. Efficacy and safety analyses were done in the intention-to-treat population. This trial is registered with ClinicalTrials.gov, number NCT01416181. Findings: Between Sept 13, 2011, and July 16, 2015, 889 patients were randomly assigned (n=440 to the natalizumab group, n=449 to the placebo group). In part 1, 195 (44%) of 439 natalizumab-treated patients and 214 (48%) of 448 placebo-treated patients had confirmed disability progression (odds ratio [OR] 0·86; 95% CI 0·66–1·13; p=0·287). No treatment effect was observed on the EDSS (OR 1·06, 95% CI 0·74–1·53; nominal p=0·753) or the T25FW (0·98, 0·74–1·30; nominal p=0·914) components of the primary outcome. However, natalizumab treatment reduced 9HPT progression (OR 0·56, 95% CI 0·40–0·80; nominal p=0·001). In part 1, 100 (22%) placebo-treated and 90 (20%) natalizumab-treated patients had serious adverse events. In part 2, 291 natalizumab-continuing patients and 274 natalizumab-naive patients received natalizumab (median follow-up 160 weeks [range 108–221]). Serious adverse events occurred in 39 (13%) patients continuing natalizumab and in 24 (9%) patients initiating natalizumab. Two deaths occurred in part 1, neither of which was considered related to study treatment. No progressive multifocal leukoencephalopathy occurred. Interpretation: Natalizumab treatment for secondary progressive multiple sclerosis did not reduce progression on the primary multicomponent disability endpoint in part 1, but it did reduce progression on its upper-limb component. Longer-term trials are needed to assess whether treatment of secondary progressive multiple sclerosis might produce benefits on additional disability components. Funding: Biogen

Le Forum, Vol. 45 #4

https://digitalcommons.library.umaine.edu/francoamericain_forum/1109/thumbnail.jp

Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.

Multiple sclerosis is a common disease of the central nervous system in which the interplay between inflammatory and neurodegenerative processes typically results in intermittent neurological disturbance followed by progressive accumulation of disability. Epidemiological studies have shown that genetic factors are primarily responsible for the substantially increased frequency of the disease seen in the relatives of affected individuals, and systematic attempts to identify linkage in multiplex families have confirmed that variation within the major histocompatibility complex (MHC) exerts the greatest individual effect on risk. Modestly powered genome-wide association studies (GWAS) have enabled more than 20 additional risk loci to be identified and have shown that multiple variants exerting modest individual effects have a key role in disease susceptibility. Most of the genetic architecture underlying susceptibility to the disease remains to be defined and is anticipated to require the analysis of sample sizes that are beyond the numbers currently available to individual research groups. In a collaborative GWAS involving 9,772 cases of European descent collected by 23 research groups working in 15 different countries, we have replicated almost all of the previously suggested associations and identified at least a further 29 novel susceptibility loci. Within the MHC we have refined the identity of the HLA-DRB1 risk alleles and confirmed that variation in the HLA-A gene underlies the independent protective effect attributable to the class I region. Immunologically relevant genes are significantly overrepresented among those mapping close to the identified loci and particularly implicate T-helper-cell differentiation in the pathogenesis of multiple sclerosis

Importance of field data for understanding a potential Mousterian funerary deposit : the case of the Regourdou 1 skeleton (Montignac-sur-Vézère, Dordogne, France)

Aside from the work of Bonifay (see Bonifay et al. 2007 for one of the more recent papers) and various articles following these earlier works (e.g., Binant 1991, Defleur 1993, Maureille et Vandermeersch 2007, Pettitt 2011, see also May 1986 for a more critical analysis), the in situ position of the remains of Regourdou 1 from layer 4 has never actually been discussed on the basis of available data from the salvage operation carried out in October 1957 by E. Bonifay and G. Laplace-Jauretche, under the administrative authority of François Bordes, or from the subsequent, more systematic, excavations directed by E. Bonifay between 1961 and 1964. Via the compilation of available information from a number of unpublished documents (François Bordes’ field notes, drawings made during the salvage operation, photographs taken in 1957, 1961 and 1962, as well as databases from the 1961 to 1964 excavations), and also a new inventory of human remains (both previously known and recently discovered), it is now possible to more accurately reconstruct the position of the human remains in a Cartesian system. In this, we assume that the concentration of remains uncovered during the salvage operation was in square G2, according to the preliminary systematic excavations carried out in 1961. They also bring to light that while practically no anatomical connections can be demonstrated with any certainty – and despite significant disruptions (all of the hominin remains are spread over 9 squares : G1 to G3, F1 to F3, E1 and E2, D2) – they are mainly positioned in squares G2 and G3 to some degree with respect to the anatomical logic of the human body. We therefore assume that Regourdou 1 was lying flat, with its head to the west – perhaps upon its trunk – close to the wall of the cavity. This result is different from the fetal position hypothesis proposed in Bonifay et al. (2007). Moreover many post-depositional (albeit Pleistocene) disturbances are also evident. We believe that they were likely the result of the utilization and modification of the cavity by brown bears and lagomorphs.Only new excavations at the site, and a better taphonomic understanding of Bonifay’s (1964) layer 4 (in which Regourdou 1 was found), and the exact role of humans in its formation, i.e., their anthropic impact on the layer, will allow us to discuss in more detail the nature of the deposition of the body, and, hopefully, the absence of the skull

Genomic Species Are Ecological Species as Revealed by Comparative Genomics in Agrobacterium tumefaciens

The definition of bacterial species is based on genomic similarities, giving rise to the operational concept of genomic species, but the reasons of the occurrence of differentiated genomic species remain largely unknown. We used the Agrobacterium tumefaciens species complex and particularly the genomic species presently called genomovar G8, which includes the sequenced strain C58, to test the hypothesis of genomic species having specific ecological adaptations possibly involved in the speciation process. We analyzed the gene repertoire specific to G8 to identify potential adaptive genes. By hybridizing 25 strains of A. tumefaciens on DNA microarrays spanning the C58 genome, we highlighted the presence and absence of genes homologous to C58 in the taxon. We found 196 genes specific to genomovar G8 that were mostly clustered into seven genomic islands on the C58 genome—one on the circular chromosome and six on the linear chromosome—suggesting higher plasticity and a major adaptive role of the latter. Clusters encoded putative functional units, four of which had been verified experimentally. The combination of G8-specific functions defines a hypothetical species primary niche for G8 related to commensal interaction with a host plant. This supports that the G8 ancestor was able to exploit a new ecological niche, maybe initiating ecological isolation and thus speciation. Searching genomic data for synapomorphic traits is a powerful way to describe bacterial species. This procedure allowed us to find such phenotypic traits specific to genomovar G8 and thus propose a Latin binomial, Agrobacterium fabrum, for this bona fide genomic species