The application of optical coherence tomography to image subsurface tissue structure of Antarctic krill Euphausia superba

Many small open ocean animals, such as Antarctic krill, are an important part of marine ecosystems. To discover what will happen to animals such as krill in a changing ocean, experiments are run in aquaria where conditions can be controlled to simulate water characteristics predicted to occur in the future. The response of individual animals to changing water conditions can be hard to observe, and with current observation techniques it is very difficult to follow the progress of an individual animal through its life. Optical coherence tomography (OCT) is an optical imaging technique that allows images at high resolution to be obtained from depths up to a few millimeters inside biological specimens. It is compatible with in vivo imaging and can be used repeatedly on the same specimens. In this work, we show how OCT may be applied to post mortem krill samples and how important physiological data such as shell thickness and estimates of organ volume can be obtained. Using OCT we find an average value for the thickness of krill exoskeleton to be (30±4) µm along a 1 cm length of the animal body. We also show that the technique may be used to provide detailed imagery of the internal structure of a pleopod joint and provide an estimate for the heart volume of (0.73±0.03) mm3

A modified formula using energy system contributions to calculate pure maximal rate of lactate accumulation during a maximal sprint cycling test

Purpose: This study aimed at comparing previous calculating formulas of maximal lactate accumulation rate (νLa.max) and a modified formula of pure νLa.max (PνLa.max) during a 15-s all-out sprint cycling test (ASCT) to analyze their relationships.Methods: Thirty male national-level track cyclists participated in this study (n = 30) and performed a 15-s ASCT. The anaerobic power output (Wpeak and Wmean), oxygen uptake, and blood lactate concentrations (La−) were measured. These parameters were used for different calculations of νLa.max and three energy contributions (phosphagen, WPCr; glycolytic, WGly; and oxidative, WOxi). The PνLa.max calculation considered delta La−, time until Wpeak (tPCr−peak), and the time contributed by the oxidative system (tOxi). Other νLa.max levels without tOxi were calculated using decreasing time by 3.5% from Wpeak (tPCr −3.5%) and tPCr−peak.Results: The absolute and relative WPCr were higher than WGly and WOxi (p < 0.0001, respectively), and the absolute and relative WGly were significantly higher than WOxi (p < 0.0001, respectively); νLa.max (tPCr −3.5%) was significantly higher than PνLa.max and νLa.max (tPCr−peak), while νLa.max (tPCr−peak) was lower than PνLa.max (p < 0.0001, respectively). PνLa.max and νLa.max (tPCr−peak) were highly correlated (r = 0.99; R2 = 0.98). This correlation was higher than the relationship between PνLa.max and νLa.max (tPCr −3.5%) (r = 0.87; R2 = 0.77). νLa.max (tPCr−peak), PνLa.max, and νLa.max (tPCr −3.5%) were found to correlate with absolute Wmean and WGly.Conclusion: PνLa.max as a modified calculation of νLa.max provides more detailed insights into the inter-individual differences in energy and glycolytic metabolism than νLa.max (tPCr−peak) and νLa.max (tPCr −3.5%). Because WOxi and WPCr can differ remarkably between athletes, implementing their values in PνLa.max can establish more optimized individual profiling for elite track cyclists

Bioreactor systems for micropropagation of plants: present scenario and future prospects

Plant micropropagation has been adapted in the fields of agriculture, horticulture, forestry, and other related fields for large-scale production of elite plants. The use of liquid media and adoption of bioreactors have escalated the production of healthy plants. Several liquid-phase, gas-phase, temporary immersion, and other modified bioreactors have been used for plant propagation. The design, principle, operational mode, merits, and demerits of various bioreactors used for the regeneration of propagules, such as bulblets, cormlets, rhizomes, microtubers, shoots (subsequent rooting), and somatic embryos, are discussed here. In addition, various parameters that affect plant regeneration are discussed with suitable examples

The three-dimensional structure of Drosophila melanogaster (6-4) photolyase at room temperature

(6-4) photolyases are flavoproteins that belong to the photolyase/cryptochrome family. Their function is to repair DNA lesions using visible light. Here, crystal structures of Drosophila melanogaster (6-4) photolyase [Dm(6-4)photolyase] at room and cryogenic temperatures are reported. The room-temperature structure was solved to 2.27 angstrom resolution and was obtained by serial femtosecond crystallography (SFX) using an X-ray free-electron laser. The crystallization and preparation conditions are also reported. The cryogenic structure was solved to 1.79 angstrom resolution using conventional X-ray crystallography. The structures agree with each other, indicating that the structural information obtained from crystallography at cryogenic temperature also applies at room temperature. Furthermore, UV-Vis absorption spectroscopy confirms that Dm(6-4)photolyase is photoactive in the crystals, giving a green light to time-resolved SFX studies on the protein, which can reveal the structural mechanism of the photoactivated protein in DNA repair.Peer reviewe

The primary structural photoresponse of phytochrome proteins captured by a femtosecond X-ray laser

Phytochrome proteins control the growth, reproduction, and photosynthesis of plants, fungi, and bacteria. Light is detected by a bilin cofactor, but it remains elusive how this leads to activation of the protein through structural changes. We present serial femtosecond X-ray crystallographic data of the chromophore-binding domains of a bacterial phytochrome at delay times of 1 ps and 10 ps after photoexcitation. The data reveal a twist of the D-ring, which leads to partial detachment of the chromophore from the protein. Unexpectedly, the conserved so-called pyrrole water is photodissociated from the chromophore, concomitant with movement of the A-ring and a key signaling aspartate. The changes are wired together by ultrafast backbone and water movements around the chromophore, channeling them into signal transduction towards the output domains. We suggest that the observed collective changes are important for the phytochrome photoresponse, explaining the earliest steps of how plants, fungi and bacteria sense red light.Peer reviewe

Polaron spin current transport in organic semiconductors

In spintronics, pure spin currents play a key role in transmitting, processing and storing information. A pure spin current is a flow of electron spin angular momentum without a simultaneous flow of charge current. It can be carried by conduction electrons or magnons and has been studied in many inorganic metals, semiconductors and insulators, but not yet in organic semiconductors. Charge carriers in π-conjugated organic materials are localized spin-1/2 polarons which move by hopping, but the mechanisms of their spin transport and relaxation are not well understood. Here we use ferromagnetic resonance spin pumping in a ferromagnet/conjugated polymer/nonmagnetic spin-sink trilayer to demonstrate the ability of polarons to carry pure spin currents over hundreds of nanometres with long spin relaxation times of up to a millisecond and to exhibit Hanle precession. By systematically comparing charge and spin transport on the same trilayer we show that spin-orbit coupling mediates spin relaxation at room temperature.This work was supported by the Cabinet Office, Government of Japan through its “Funding Program for Next Generation World-Leading Researchers”, PRESTO-JST “Innovative nano-electronics through interdisciplinary collaboration among material, device and system layers”, the Asahi Glass Foundation and the Engineering and Physical Sciences Research Council (EPSRC).This is the accepted version of the article. The final version was published in Nature Physics and is available at http://www.nature.com/nphys/journal/vaop/ncurrent/full/nphys2901.html. Nature Publishing Group's licence and reuse policy is available at http://www.nature.com/authors/policies/license.html

The state of the Martian climate

60°N was +2.0°C, relative to the 1981–2010 average value (Fig. 5.1). This marks a new high for the record. The average annual surface air temperature (SAT) anomaly for 2016 for land stations north of starting in 1900, and is a significant increase over the previous highest value of +1.2°C, which was observed in 2007, 2011, and 2015. Average global annual temperatures also showed record values in 2015 and 2016. Currently, the Arctic is warming at more than twice the rate of lower latitudes