Co-Variation between Seed Dormancy, Growth Rate and Flowering Time Changes with Latitude in Arabidopsis thaliana

Life-history traits controlling the duration and timing of developmental phases in the life cycle jointly determine fitness. Therefore, life-history traits studied in isolation provide an incomplete view on the relevance of life-cycle variation for adaptation. In this study, we examine genetic variation in traits covering the major life history events of the annual species Arabidopsis thaliana: seed dormancy, vegetative growth rate and flowering time. In a sample of 112 genotypes collected throughout the European range of the species, both seed dormancy and flowering time follow a latitudinal gradient independent of the major population structure gradient. This finding confirms previous studies reporting the adaptive evolution of these two traits. Here, however, we further analyze patterns of co-variation among traits. We observe that co-variation between primary dormancy, vegetative growth rate and flowering time also follows a latitudinal cline. At higher latitudes, vegetative growth rate is positively correlated with primary dormancy and negatively with flowering time. In the South, this trend disappears. Patterns of trait co-variation change, presumably because major environmental gradients shift with latitude. This pattern appears unrelated to population structure, suggesting that changes in the coordinated evolution of major life history traits is adaptive. Our data suggest that A. thaliana provides a good model for the evolution of trade-offs and their genetic basis.<br

Observation of an Excited Bc+ State

Using pp collision data corresponding to an integrated luminosity of 8.5 fb-1 recorded by the LHCb experiment at center-of-mass energies of s=7, 8, and 13 TeV, the observation of an excited Bc+ state in the Bc+π+π- invariant-mass spectrum is reported. The observed peak has a mass of 6841.2±0.6(stat)±0.1(syst)±0.8(Bc+) MeV/c2, where the last uncertainty is due to the limited knowledge of the Bc+ mass. It is consistent with expectations of the Bc∗(2S31)+ state reconstructed without the low-energy photon from the Bc∗(1S31)+→Bc+γ decay following Bc∗(2S31)+→Bc∗(1S31)+π+π-. A second state is seen with a global (local) statistical significance of 2.2σ (3.2σ) and a mass of 6872.1±1.3(stat)±0.1(syst)±0.8(Bc+) MeV/c2, and is consistent with the Bc(2S10)+ state. These mass measurements are the most precise to date

Co-Variation between Seed dormancy, growth rate and flowering time changes with latitude in Arabidopsis thaliana

Life-history traits controlling the duration and timing of developmental phases in the life cycle jointly determine fitness. Therefore, life-history traits studied in isolation provide an incomplete view on the relevance of life-cycle variation for adaptation. In this study, we examine genetic variation in traits covering the major life history events of the annual species Arabidopsis thaliana: seed dormancy, vegetative growth rate and flowering time. In a sample of 112 genotypes collected throughout the European range of the species, both seed dormancy and flowering time follow a latitudinal gradient independent of the major population structure gradient. This finding confirms previous studies reporting the adaptive evolution of these two traits. Here, however, we further analyze patterns of co-variation among traits. We observe that co-variation between primary dormancy, vegetative growth rate and flowering time also follows a latitudinal cline. At higher latitudes, vegetative growth rate is positively correlated with primary dormancy and negatively with flowering time. In the South, this trend disappears. Patterns of trait co-variation change, presumably because major environmental gradients shift with latitude. This pattern appears unrelated to population structure, suggesting that changes in the coordinated evolution of major life history traits is adaptive. Our data suggest that A. thaliana provides a good model for the evolution of trade-offs and their genetic basi

Bose-Einstein correlations of same-sign charged pions in the forward region in pp collisions at √s=7 TeV

Bose-Einstein correlations of same-sign charged pions, produced in protonproton collisions at a 7 TeV centre-of-mass energy, are studied using a data sample collected by the LHCb experiment. The signature for Bose-Einstein correlations is observed in the form of an enhancement of pairs of like-sign charged pions with small four-momentum difference squared. The charged-particle multiplicity dependence of the Bose-Einstein correlation parameters describing the correlation strength and the size of the emitting source is investigated, determining both the correlation radius and the chaoticity parameter. The measured correlation radius is found to increase as a function of increasing charged-particle multiplicity, while the chaoticity parameter is seen to decreas

Measurement of the inelastic pp cross-section at a centre-of-mass energy of 13TeV

The cross-section for inelastic proton-proton collisions at a centre-of-mass energy of 13TeV is measured with the LHCb detector. The fiducial cross-section for inelastic interactions producing at least one prompt long-lived charged particle with momentum p &gt; 2 GeV/c in the pseudorapidity range 2 &lt; η &lt; 5 is determined to be ϭ acc = 62:2 ± 0:2 ± 2:5mb. The first uncertainty is the intrinsic systematic uncertainty of the measurement, the second is due to the uncertainty on the integrated luminosity. The statistical uncertainty is negligible. Extrapolation to full phase space yields the total inelastic proton-proton cross-section ϭ inel = 75:4 ± 3:0 ± 4:5mb, where the first uncertainty is experimental and the second due to the extrapolation. An updated value of the inelastic cross-section at a centre-of-mass energy of 7TeV is also reported

Atmospheric forcing of the Oregon coastal ocean during the 2001 upwelling season

Copyrighted by American Geophysical Union. Meteorological conditions during an intensive oceanographic observational program in May through August 2001 along the central Oregon coast are described and related to larger-scale and longer-term conditions. Southward wind stresses of 0.05-0.1 N m⁻² occurred roughly 75% of the time, with a sustained period of dominantly southward stress from mid-June through July. Wind variations were correlated with variations in the large-scale Aleutian Low and North Pacific High pressure centers; correlations with the continental Thermal Low were small. Intraseasonal oscillations in alongshore wind stress (periods near 20 days) correlated with the north-south position of the jet stream. These stress oscillations drove 20 day oscillations in upper ocean temperature, with a lag of roughly 5 days for maximum correlation and amplitudes near 4°C. The sum of sensible and latent air-sea heat fluxes was generally into the atmosphere through June, then weakly into the ocean thereafter, with fluctuations on synoptic timescales. Semidiurnal fluctuations in surface air temperature were observed at two northern moorings, apparently forced indirectly by nonlinear internal ocean tides. The diurnal cycle of wind stress was similar for both southward and northward wind conditions, with the diurnal alongshore fluctuation southward in the evening and northward in the morning. During southward winds the marine atmospheric boundary layer (MABL) was typically defined clearly by a strong temperature inversion, and a shallow stable internal boundary layer often formed within the MABL over cool upwelled waters, with surface air temperature roughly 1°C lower inshore than offshore. During northward winds, essentially no low-level temperature stratification was observed

Design Principles for Ligand-Sensing, Conformation-Switching Ribozymes

Nucleic acid sensor elements are proving increasingly useful in biotechnology and biomedical applications. A number of ligand-sensing, conformational-switching ribozymes (also known as allosteric ribozymes or aptazymes) have been generated by some combination of directed evolution or rational design. Such sensor elements typically fuse a molecular recognition domain (aptamer) with a catalytic signal generator (ribozyme). Although the rational design of aptazymes has begun to be explored, the relationships between the thermodynamics of aptazyme conformational changes and aptazyme performance in vitro and in vivo have not been examined in a quantitative framework. We have therefore developed a quantitative and predictive model for aptazymes as biosensors in vitro and as riboswitches in vivo. In the process, we have identified key relationships (or dimensionless parameters) that dictate aptazyme performance, and in consequence, established equations for precisely engineering aptazyme function. In particular, our analysis quantifies the intrinsic trade-off between ligand sensitivity and the dynamic range of activity. We were also able to determine how in vivo parameters, such as mRNA degradation rates, impact the design and function of aptazymes when used as riboswitches. Using this theoretical framework we were able to achieve quantitative agreement between our models and published data. In consequence, we are able to suggest experimental guidelines for quantitatively predicting the performance of aptazyme-based riboswitches. By identifying factors that limit the performance of previously published systems we were able to generate immediately testable hypotheses for their improvement. The robust theoretical framework and identified optimization parameters should now enable the precision design of aptazymes for biotechnological and clinical applications

Cis-regulatory evolution spotlights species differences in the adaptive potential of gene expression plasticity

Plasticity allows organisms to respond to environmental change. Here the authors compare the distribution of cis-regulatory variants in the transcriptomes of Arabidopsis lyrata and A. halleriafter exposure to stress, to trace the role of polygenic selection in the evolution of gene expression plasticity

Atmospheric forcing of the Oregon coastal ocean during the 2001 upwelling season

Meteorological conditions during an intensive oceanographic observational program in May through August 2001 along the central Oregon coast are described and related to larger-scale and longer-term conditions. Southward wind stresses of 0.05-0.1 N m⁻² occurred roughly 75% of the time, with a sustained period of dominantly southward stress from mid-June through July. Wind variations were correlated with variations in the large-scale Aleutian Low and North Pacific High pressure centers; correlations with the continental Thermal Low were small. Intraseasonal oscillations in alongshore wind stress (periods near 20 days) correlated with the north-south position of the jet stream. These stress oscillations drove 20 day oscillations in upper ocean temperature, with a lag of roughly 5 days for maximum correlation and amplitudes near 4°C. The sum of sensible and latent air-sea heat fluxes was generally into the atmosphere through June, then weakly into the ocean thereafter, with fluctuations on synoptic timescales. Semidiurnal fluctuations in surface air temperature were observed at two northern moorings, apparently forced indirectly by nonlinear internal ocean tides. The diurnal cycle of wind stress was similar for both southward and northward wind conditions, with the diurnal alongshore fluctuation southward in the evening and northward in the morning. During southward winds the marine atmospheric boundary layer (MABL) was typically defined clearly by a strong temperature inversion, and a shallow stable internal boundary layer often formed within the MABL over cool upwelled waters, with surface air temperature roughly 1°C lower inshore than offshore. During northward winds, essentially no low-level temperature stratification was observed.Keywords: coastal meteorology, air‐sea interactions, coastal upwellin