Acoustic resonances and sound scattering by a shear layer

The energy reflection coefficient is evaluated numerically for plane waves incident on a plane shear layer having a linear velocity profile. The shear layer is found to exhibit no resonances and no Brewster angles. The behavior of the reflection coefficient depends crucially on the parameter tau, a nondimensional measure of the disturbance Strouhal number with respect to the disturbance Mach number in the mean flow direction. For moderate values of tau, the amplified reflection regime degenerates into the total reflection one, whereas in the ordinary reflection regime the variation of the reflection coefficient with tau depends on whether or not the corresponding vortex sheet has a Brewster angle. The results indicate that caution should be exercised in uncritically modeling a finite thickness shear layer by a corresponding vortex sheet

Nonlinear evolution of two fast-particle-driven modes near the linear stability threshold

A system of two coupled integro-differential equations is derived and solved for the non-linear evolution of two waves excited by the resonant interaction with fast ions just above the linear instability threshold. The effects of a resonant particle source and classical relaxation processes represented by the Krook, diffusion, and dynamical friction collision operators are included in the model, which exhibits different nonlinear evolution regimes, mainly depending on the type of relaxation process that restores the unstable distribution function of fast ions. When the Krook collisions or diffusion dominate, the wave amplitude evolution is characterized by modulation and saturation. However, when the dynamical friction dominates, the wave amplitude is in the explosive regime. In addition, it is found that the finite separation in the phase velocities of the two modes weakens the interaction strength between the modes

Development of an animal experimental model to study the effects of levonorgestrel on the human endometrium

BACKGROUND: This study was designed to develop an animal model to test the response of endometrium to local progestin delivery. METHODS: Proliferative human endometrium was subcutaneously grafted in two groups of SCID mice that received, 2 days before, a subcutaneous estradiol (E2) pellet and, for half of them, an additional implant of levonorgestrel (LNG). Mice were sacrificed 1, 2, 3 or 4 weeks after endometrial implantation and grafts were histologically analysed. Proliferation, steroid hormone receptors, blood vessels and stromal decidualization in both groups (E2 and LNG) were immunohistologically evaluated and compared with proliferative endometrium and endometrium from women with an LNG intrauterine device. RESULTS: Grafts presented normal morphological endometrial characteristics. The expression of progesterone receptors was significantly decreased in glands and stroma of the LNG group as compared with the E2 group at all times. A significant decrease was also observed in the stromal expression of estrogen receptor- in the LNG group. At 4 weeks, the mean cross-sectional area of vessels was significantly higher after LNG treatment. CONCLUSIONS: These morphological and immunohistochemical characteristics are similar to those observed in women treated with local LNG. This mouse model might facilitate further investigations needed to understand the mechanisms responsible for the breakthrough bleeding frequently observed in progestin users

Molecular evolution of HoxA13 and the multiple origins of limbless morphologies in amphibians and reptiles

Developmental processes and their results, morphological characters, are inherited through transmission of genes regulating development. While there is ample evidence that cis-regulatory elements tend to be modular, with sequence segments dedicated to different roles, the situation for proteins is less clear, being particularly complex for transcription factors with multiple functions. Some motifs mediating protein-protein interactions may be exclusive to particular developmental roles, but it is also possible that motifs are mostly shared among different processes. Here we focus on HoxA13, a protein essential for limb development. We asked whether the HoxA13 amino acid sequence evolved similarly in three limbless clades: Gymnophiona, Amphisbaenia and Serpentes. We explored variation in ω (dN/dS) using a maximum-likelihood framework and HoxA13sequences from 47 species. Comparisons of evolutionary models provided low ω global values and no evidence that HoxA13 experienced relaxed selection in limbless clades. Branch-site models failed to detect evidence for positive selection acting on any site along branches of Amphisbaena and Gymnophiona, while three sites were identified in Serpentes. Examination of alignments did not reveal consistent sequence differences between limbed and limbless species. We conclude that HoxA13 has no modules exclusive to limb development, which may be explained by its involvement in multiple developmental processes

DEVELOPING TECHNICAL ENGLISH SKILLS FOR CIVIL ENGINEERING STUDENTS

Traditionally, Spanish schools of civil engineering provide their students a class on “Technical English” in order to develop their language skills. However, this class does not cover all the skills that the student would need in the labor market and mainly focuses in the reading and writing skills, and in a lower degree in the speaking and listening ones. This paper proposes a series of innovative and informal training activities, such as cine-forum on technical civil engineering topics and role playing on real professional situations, that allow Spanish civil engineering students to develop English skills, that can rarely be worked in the classroom (i.e. speaking, negotiating and conversing), which encourage debate, participation, and foster their self-confidence to speak about technical-English topics in public. Although the students’ level of English is much lower than expected, they all agree on the importance of technical English for their future career. The results also show the students’ lack in skills that are difficult to train in regular classes (speaking and talking). Consequently, this situation would require to provide complementary activities like the ones suggested in this project in order to develop these skills and increase the students’ demand for engineering classes taught in English

A new algorithm for computing the Geronimus transformations for large shifts

A monic Jacobi matrix is a tridiagonal matrix which contains the parameters of the three-term recurrence relation satisfied by the sequence of monic polynomials orthogonal with respect to a measure. The basic Geronimus transformation with shift ? transforms the monic Jacobi matrix associated with a measure d? into the monic Jacobi matrix associated with d?/(x????)?+?C?(x????), for some constant C. In this paper we examine the algorithms available to compute this transformation and we propose a more accurate algorithm, estimate its forward errors, and prove that it is forward stable. In particular, we show that for C?=?0 the problem is very ill-conditioned, and we present a new algorithm that uses extended precision

Insights into Hox Protein Function from a Large Scale Combinatorial Analysis of Protein Domains

Protein function is encoded within protein sequence and protein domains. However, how protein domains cooperate within a protein to modulate overall activity and how this impacts functional diversification at the molecular and organism levels remains largely unaddressed. Focusing on three domains of the central class Drosophila Hox transcription factor AbdominalA (AbdA), we used combinatorial domain mutations and most known AbdA developmental functions as biological readouts to investigate how protein domains collectively shape protein activity. The results uncover redundancy, interactivity, and multifunctionality of protein domains as salient features underlying overall AbdA protein activity, providing means to apprehend functional diversity and accounting for the robustness of Hox-controlled developmental programs. Importantly, the results highlight context-dependency in protein domain usage and interaction, allowing major modifications in domains to be tolerated without general functional loss. The non-pleoitropic effect of domain mutation suggests that protein modification may contribute more broadly to molecular changes underlying morphological diversification during evolution, so far thought to rely largely on modification in gene cis-regulatory sequences

A glucose biosensor based on novel Lutetium bis-phthalocyanine incorporated silica-polyaniline conducting nanobeads

The facile preparation of highly sensitive electrochemical bioprobe based on lutetium 13 phthalocyanine incorporated silica nanoparticles (SiO2(LuPc2)) grafted with Poly(vinyl 14 alcohol-vinyl acetate) itaconic acid (PANI(PVIA)) doped polyaniline conducting nanobeads 15 (SiO2(LuPc2)PANI(PVIA)-CNB) is reported. The preparation of CNB involves two stages (i) 16 pristine synthesis of LuPc2 incorporated SiO2 and PANI(PVIA); (ii) covalent grafting of 17 PANI(PVIA) onto the surface of SiO2(LuPc2). The morphology and other physico-chemical 18 characteristics of CNB were investigated. The scanning electron microscopy images show 19 that the average particle size of SiO2(LuPc2)PANI(PVIA)-CNB was between 180-220 nm. 20 The amperometric measurements showed that the fabricated SiO2(LuPc2)PANI(PVIA)-21 CNB/GOx biosensor exhibited wide linear range (1-16 mM) detection of glucose with a low 22 detection limit of 0.1 mM. SiO2(LuPc2)PANI(PVIA)-CNB/GOx biosensor exhibited high 23 sensitivity (38.53 μA mM−1 cm−2) towards the detection of glucose under optimized 24 conditions. Besides, the real (juice and serum) sample analysis based on a standard addition 25 method and direct detection method showed high precision for measuring glucose at 26 SiO2(LuPc2)PANI(PVIA)-CNB/GOx biosensor. The SiO2(LuPc2)PANI(PVIA)-CNB/GOx 27 biosensor stored under refrigerated condition over a period of 45 days retains ~ 96.4 % 28 glucose response current

Bovine proteins containing poly-glutamine repeats are often polymorphic and enriched for components of transcriptional regulatory complexes

peer-reviewedBackground: About forty human diseases are caused by repeat instability mutations. A distinct subset of these diseases is the result of extreme expansions of polymorphic trinucleotide repeats; typically CAG repeats encoding poly-glutamine (poly-Q) tracts in proteins. Polymorphic repeat length variation is also apparent in human poly-Q encoding genes from normal individuals. As these coding sequence repeats are subject to selection in mammals, it has been suggested that normal variations in some of these typically highly conserved genes are implicated in morphological differences between species and phenotypic variations within species. At present, poly-Q encoding genes in non-human mammalian species are poorly documented, as are their functions and propensities for polymorphic variation. Results: The current investigation identified 178 bovine poly-Q encoding genes (Q ≥ 5) and within this group, 26 genes with orthologs in both human and mouse that did not contain poly-Q repeats. The bovine poly-Q encoding genes typically had ubiquitous expression patterns although there was bias towards expression in epithelia, brain and testes. They were also characterised by unusually large sizes. Analysis of gene ontology terms revealed that the encoded proteins were strongly enriched for functions associated with transcriptional regulation and many contributed to physical interaction networks in the nucleus where they presumably act cooperatively in transcriptional regulatory complexes. In addition, the coding sequence CAG repeats in some bovine genes impacted mRNA splicing thereby generating unusual transcriptional diversity, which in at least one instance was tissue-specific. The poly-Q encoding genes were prioritised using multiple criteria for their likelihood of being polymorphic and then the highest ranking group was experimentally tested for polymorphic variation within a cattle diversity panel. Extensive and meiotically stable variation was identified. Conclusions: Transcriptional diversity can potentially be generated in poly-Q encoding genes by the impact of CAG repeat tracts on mRNA alternative splicing. This effect, combined with the physical interactions of the encoded proteins in large transcriptional regulatory complexes suggests that polymorphic variations of proteins in these complexes have strong potential to affect phenotype.Dairy Australia (through the Innovative Dairy Cooperative Research Center